mRNA_H-paniculata_contig47828.11849.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig47828.11849.1
Unique NamemRNA_H-paniculata_contig47828.11849.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig47828.11849.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 7.680e-10
Identity = 62/214 (28.97%), Postives = 84/214 (39.25%), Query Frame = 3 
Query:   36 DGCEEFWVADSEATADMTPSNELIFDYEACSNLFVTVANGETLPIEGYGKMLVWMKDRGEIHKFSLSRVVHVPDLDTNLFSRQVVVKQGLTVCLKEEDAAIVLPNGNDLLCRKIGKHDFLEATRFPPPPAISYIPRAGSDESANALLAPGKMPINPSKI---DMNLFHQSYGHLHEALLRDKGK*QGLTLVGDLLECKRCSLAKGLRKPISTST 668
            D C E W AD+    +MT S   + D   C N  V    G T  +   G + V            L  V++ P L  NLFS            L   D  +   +G+       G    L AT +          R G +   + L A    P NP ++   D+N FH  YGH HE +LR   K  G+ L G +  C  CS+ K +RK I+  T
Sbjct:  246 DRCIEDWYADTGTAFNMTDSLSCMKDVNPCHNK-VKGIGGVTCEVALSGTLEVAFVSADSEFSAELKNVLYAPKLGYNLFSPSAEFDGESWNGLGGPDGVMTAFHGHVTFQNFDG---MLVATAY----------RLGHNSIGSVLAA--LTPSNPKRVKIMDVNDFHNIYGHAHEGMLRTTAKRLGIELTGKMHACSGCSMGKAIRKAIAHVT 443
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BLAST of mRNA_H-paniculata_contig47828.11849.1 vs. uniprot
Match: UPI000C140CA7 (uncharacterized protein LOC111354272 n=1 Tax=Spodoptera litura TaxID=69820 RepID=UPI000C140CA7)

HSP 1 Score: 60.8 bits (146), Expect = 1.470e-7
Identity = 48/203 (23.65%), Postives = 83/203 (40.89%), Query Frame = 3 
Query:   84 MTPSNELIFDYEACSNLFVTVANGETLPIEGYGKMLVWMKDRGEIHKFSLSRVVHVPDLDTNLFSRQVVVKQGLTVCLKEEDAAIVLPNGNDLLCRKIGKHDFLEATRFPPPPAISYIPRAGSDESANALLAPGKMPINPSKIDMNLFHQSYGHLHEALLRDKGK*QGLTLVG--DLLECKRCSLAKGLRKPISTSTNTRAQT 686
            M+    L   Y    N  VTV NG  + + GYG++ + + +  +  + ++  V+HVPDL+TNLFS     K+G  +  +E+       N    +  + G   FL               R  +  +AN         ++  K D++ +H+   H +   ++D  K   + +    D   C+ C   K  R P   S N  + T
Sbjct:    1 MSNDINLFTSYSVAQNKKVTVGNGTQIKVHGYGQVALEVWNGRKWIESTIDNVLHVPDLETNLFSVNCATKKGYVMITEEKMCKFYKQNKLMAIAERCGSMYFLNV-------------RLITAYAAN---------VSDMKSDLHEWHEKLAHQNIPYVKDVLKKHNVKMESEADATTCESCLKGKMSRLPYPVSNNVSSST 181
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig47828.11849.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JH25_9PHAE7.680e-1028.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI000C140CA71.470e-723.65uncharacterized protein LOC111354272 n=1 Tax=Spodo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig47828contigH-paniculata_contig47828:710..1438 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size729
Cds size498
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig47828.11849.1prot_H-paniculata_contig47828.11849.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig47828 793..1290 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930418.147065-UTR-H-paniculata_contig47828:709..7921622930418.147065-UTR-H-paniculata_contig47828:709..792Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig47828 710..792 +
1691481283.051231-UTR-H-paniculata_contig47828:709..7921691481283.051231-UTR-H-paniculata_contig47828:709..792Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig47828 710..792 +
1622930418.1971402-UTR-H-paniculata_contig47828:1290..14381622930418.1971402-UTR-H-paniculata_contig47828:1290..1438Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig47828 1291..1438 +
1691481283.07585-UTR-H-paniculata_contig47828:1290..14381691481283.07585-UTR-H-paniculata_contig47828:1290..1438Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig47828 1291..1438 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930418.178487-CDS-H-paniculata_contig47828:792..12901622930418.178487-CDS-H-paniculata_contig47828:792..1290Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47828 793..1290 +
1691481283.0655396-CDS-H-paniculata_contig47828:792..12901691481283.0655396-CDS-H-paniculata_contig47828:792..1290Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47828 793..1290 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig47828.11849.1

>prot_H-paniculata_contig47828.11849.1 ID=prot_H-paniculata_contig47828.11849.1|Name=mRNA_H-paniculata_contig47828.11849.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=166bp
MTPSNELIFDYEACSNLFVTVANGETLPIEGYGKMLVWMKDRGEIHKFSL
SRVVHVPDLDTNLFSRQVVVKQGLTVCLKEEDAAIVLPNGNDLLCRKIGK
HDFLEATRFPPPPAISYIPRAGSDESANALLAPGKMPINPSKIDMNLFHQ
SYGHLHEALLRDKGK*
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mRNA from alignment at H-paniculata_contig47828:710..1438+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig47828.11849.1 ID=mRNA_H-paniculata_contig47828.11849.1|Name=mRNA_H-paniculata_contig47828.11849.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=729bp|location=Sequence derived from alignment at H-paniculata_contig47828:710..1438+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGAGCTTATTGAAGAGGACAAGCCAGTACCAGTAGATGGTTGTGAGGAG
TTTTGGGTGGCCGATAGTGAGGCTACGGCCGACATGACTCCGTCTAACGA
ATTGATATTTGATTACGAAGCCTGCAGTAATTTGTTTGTGACGGTGGCTA
ACGGCGAAACGCTTCCGATTGAAGGATATGGTAAGATGTTGGTATGGATG
AAGGATCGGGGCGAGATACACAAATTCAGCTTGAGTCGTGTAGTGCATGT
TCCGGACCTGGACACGAATTTGTTTTCCCGACAGGTTGTAGTGAAGCAGG
GGCTTACTGTCTGTTTGAAGGAGGAGGATGCAGCAATTGTACTACCTAAT
GGGAATGATCTTTTGTGCAGAAAAATCGGAAAACATGACTTTTTGGAAGC
GACTCGATTCCCGCCCCCACCTGCTATATCTTACATTCCTCGAGCCGGAT
CTGACGAGTCTGCGAATGCTTTGCTTGCCCCCGGAAAGATGCCCATCAAT
CCCAGCAAGATTGATATGAACTTGTTTCACCAGTCCTACGGTCATCTGCA
CGAGGCACTGTTACGTGACAAGGGCAAGTAGCAAGGGTTGACTCTTGTGG
GCGACTTGTTGGAGTGTAAGCGGTGCTCTTTGGCCAAGGGACTGCGCAAG
CCCATTTCTACGTCGACGAACACACGTGCACAAACGATTCCTTCTTCGAT
GGGGAGGAGGGAACCTCGGAACGTCTCGA
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Coding sequence (CDS) from alignment at H-paniculata_contig47828:710..1438+

>mRNA_H-paniculata_contig47828.11849.1 ID=mRNA_H-paniculata_contig47828.11849.1|Name=mRNA_H-paniculata_contig47828.11849.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=996bp|location=Sequence derived from alignment at H-paniculata_contig47828:710..1438+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTCCGTCTAACGAATTGATATTTGATTACGAAGCCTGCAGTAATTT
GTTTGTGACGGTGGCTAACGGCGAAACGCTTCCGATTGAAGGATATGGTA
AGATGTTGGTATGGATGAAGGATCGGGGCGAGATACACAAATTCAGCTTG
AGTCGTGTAGTGCATGTTCCGGACCTGGACACGAATTTGTTTTCCCGACA
GGTTGTAGTGAAGCAGGGGCTTACTGTCTGTTTGAAGGAGGAGGATGCAG
CAATTGTACTACCTAATGGGAATGATCTTTTGTGCAGAAAAATCGGAAAA
CATGACTTTTTGGAAGCGACTCGATTCCCGCCCCCACCTGCTATATCTTA
CATTCCTCGAGCCGGATCTGACGAGTCTGCGAATGCTTTGCTTGCCCCCG
GAAAGATGCCCATCAATCCCAGCAAGATTGATATGAACTTGTTTCACCAG
TCCTACGGTCATCTGCACGAGGCACTGTTACGTGACAAGGGCAAGTAGAT
GACTCCGTCTAACGAATTGATATTTGATTACGAAGCCTGCAGTAATTTGT
TTGTGACGGTGGCTAACGGCGAAACGCTTCCGATTGAAGGATATGGTAAG
ATGTTGGTATGGATGAAGGATCGGGGCGAGATACACAAATTCAGCTTGAG
TCGTGTAGTGCATGTTCCGGACCTGGACACGAATTTGTTTTCCCGACAGG
TTGTAGTGAAGCAGGGGCTTACTGTCTGTTTGAAGGAGGAGGATGCAGCA
ATTGTACTACCTAATGGGAATGATCTTTTGTGCAGAAAAATCGGAAAACA
TGACTTTTTGGAAGCGACTCGATTCCCGCCCCCACCTGCTATATCTTACA
TTCCTCGAGCCGGATCTGACGAGTCTGCGAATGCTTTGCTTGCCCCCGGA
AAGATGCCCATCAATCCCAGCAAGATTGATATGAACTTGTTTCACCAGTC
CTACGGTCATCTGCACGAGGCACTGTTACGTGACAAGGGCAAGTAG
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