mRNA_H-paniculata_contig47822.11848.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig47822.11848.1
Unique NamemRNA_H-paniculata_contig47822.11848.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig47822.11848.1 vs. uniprot
Match: A0A6H5L269_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L269_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 8.940e-44
Identity = 73/111 (65.77%), Postives = 90/111 (81.08%), Query Frame = 1
Query:    1 PLVYISRTTDNNEKNWDATDLECAALVWAIKKLRVFLYGIKFDAFTDHQPLLNYISLSEKKPKVQRMCDILSQFQFNLRYKPGKRNQLADALSRLPVPATEDDENACRILD 333
            PLVYISR+T  NE NWD + LEC ALVWAI+KLRV+LYGI F+AFTDHQPLL++IS+ EKKP+VQRMCD LS + F L Y+ GK NQ+ADALSRLP P T  D + C++++
Sbjct:  402 PLVYISRSTLPNEANWDVSSLECGALVWAIRKLRVYLYGIPFEAFTDHQPLLSFISMGEKKPRVQRMCDFLSAYSFTLSYRKGKENQVADALSRLPQPPTAADFDKCKLIE 512          
BLAST of mRNA_H-paniculata_contig47822.11848.1 vs. uniprot
Match: A0A6H5KJH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH5_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 5.710e-43
Identity = 72/111 (64.86%), Postives = 89/111 (80.18%), Query Frame = 1
Query:    1 PLVYISRTTDNNEKNWDATDLECAALVWAIKKLRVFLYGIKFDAFTDHQPLLNYISLSEKKPKVQRMCDILSQFQFNLRYKPGKRNQLADALSRLPVPATEDDENACRILD 333
            PLVYISR+T  NE NWD + LEC ALVWAI+KLRV+LYGI F+AFTDHQPLL++IS+ EKKP+VQ MCD L+ + F L Y+ GK NQ+ADALSRLP P T DD + C+ ++
Sbjct:  253 PLVYISRSTLPNEANWDVSSLECGALVWAIRKLRVYLYGIPFEAFTDHQPLLSFISMGEKKPRVQHMCDFLTAYSFTLSYRKGKDNQVADALSRLPQPPTADDFDKCKSIE 363          
BLAST of mRNA_H-paniculata_contig47822.11848.1 vs. uniprot
Match: A0A6H5KPU9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPU9_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 3.650e-37
Identity = 68/101 (67.33%), Postives = 78/101 (77.23%), Query Frame = 1
Query:    1 PLVYISRTTDNNEKNWDATDLECAALVWAIKKLRVFLYGIKFDAFTDHQPLLNYISLSEKKPKVQRMCDILSQFQFNLRYKPGKRNQLADALSRLPVPATE 303
            PLVY+SR+T  NE NWD TDLE  ALVWA+KKLRV+LYGI F   TDHQPL +Y+SLSEKK +V RMCD LS +QF+LRYK G  NQ AD L RLP  AT+
Sbjct:  109 PLVYVSRSTLPNECNWDTTDLEMGALVWAVKKLRVYLYGIPFVVHTDHQPLTSYLSLSEKKLRVHRMCDFLSSYQFSLRYKKGNDNQAADMLFRLPQSATD 209          
BLAST of mRNA_H-paniculata_contig47822.11848.1 vs. uniprot
Match: A0A6H5KKY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKY6_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 9.410e-37
Identity = 66/101 (65.35%), Postives = 76/101 (75.25%), Query Frame = 1
Query:    1 PLVYISRTTDNNEKNWDATDLECAALVWAIKKLRVFLYGIKFDAFTDHQPLLNYISLSEKKPKVQRMCDILSQFQFNLRYKPGKRNQLADALSRLPVPATE 303
            PLVY+SR+T  NE+NWD  DL   AL W +KKLRV+ YGI F   TDHQPL  Y+SLSEKKP+V  MCD LS +QF+LRYK G  NQ+AD LSRLP PATE
Sbjct: 1311 PLVYVSRSTLPNERNWDTADLGMGALFWVVKKLRVYSYGIPFVVHTDHQPLTAYLSLSEKKPRVHGMCDFLSSYQFSLRYKKGNDNQVADMLSRLPQPATE 1411          
BLAST of mRNA_H-paniculata_contig47822.11848.1 vs. uniprot
Match: A0A6H5KRW3_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRW3_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 5.300e-31
Identity = 60/113 (53.10%), Postives = 77/113 (68.14%), Query Frame = 1
Query:    1 PLVYISRTTDNNEKNWDATDLECAALVWAIKKLRVFLYGIKFDAFTDHQPLLNYISLSEKKPKVQRMCDILSQFQFNLRYKPGKRNQLADALSRLPVPATEDDENA-CRILDP 336
            PL Y+SR+T  NE+ W AT+LEC A+VWAIKK R   YGI F  ++DHQPL N  SL+EK  +VQR  D LS + + L Y+PGK N  AD +SRLP+P  E+D +   R+ DP
Sbjct:  307 PLCYLSRSTYPNERRWSATELECGAIVWAIKKNRTLFYGIPFQIYSDHQPLRNLESLAEKNNRVQRWFDFLSAYTYELIYRPGKANGNADCMSRLPLPPMEEDASPEMRLTDP 419          
BLAST of mRNA_H-paniculata_contig47822.11848.1 vs. uniprot
Match: A0A6H5JJN6_9PHAE (RT_RNaseH domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJN6_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 7.760e-31
Identity = 58/113 (51.33%), Postives = 78/113 (69.03%), Query Frame = 1
Query:    1 PLVYISRTTDNNEKNWDATDLECAALVWAIKKLRVFLYGIKFDAFTDHQPLLNYISLSEKKPKVQRMCDILSQFQFNLRYKPGKRNQLADALSRLPVPATEDDENA-CRILDP 336
            PL ++SR+T  NE  W  T+LE  A+VWAIKK R   YGI F+ ++DHQPL N  SL+EK  +VQR  D LS + + L+Y+PG+ N  AD +SRLP+PAT++DE    R+ DP
Sbjct:  152 PLCFLSRSTFPNETRWSPTELEAGAIVWAIKKNRTLFYGIPFEVYSDHQPLRNLGSLAEKNNRVQRWYDFLSAYTYELKYRPGRENANADLMSRLPLPATKEDEAPDVRLTDP 264          
BLAST of mRNA_H-paniculata_contig47822.11848.1 vs. uniprot
Match: A0A6H5K8H1_9PHAE (RT_RNaseH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8H1_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 8.130e-31
Identity = 55/88 (62.50%), Postives = 69/88 (78.41%), Query Frame = 1
Query:    1 PLVYISRTTDNNEKNWDATDLECAALVWAIKKLRVFLYGIKFDAFTDHQPLLNYISLSEKKPKVQRMCDILSQFQFNLRYKPGKRNQL 264
            PLVY+SR+T  NE NWD + LEC ALVWAI+KLR  LYGI F+AFTDH+PLL++ S+ EKKP+VQRM D LS + F L Y+ GK N++
Sbjct:  374 PLVYVSRSTLPNEANWDVSSLECGALVWAIRKLRDCLYGIPFEAFTDHKPLLSFFSMGEKKPRVQRMGDFLSAYSFTLSYRKGKDNRM 461          
BLAST of mRNA_H-paniculata_contig47822.11848.1 vs. uniprot
Match: A0A6H5K4J2_9PHAE (RT_RNaseH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4J2_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 2.140e-30
Identity = 58/113 (51.33%), Postives = 76/113 (67.26%), Query Frame = 1
Query:    1 PLVYISRTTDNNEKNWDATDLECAALVWAIKKLRVFLYGIKFDAFTDHQPLLNYISLSEKKPKVQRMCDILSQFQFNLRYKPGKRNQLADALSRLPVPATEDDENA-CRILDP 336
            PL ++SR+T  NE  W  T+LE  A+VWAIKK R   YGI F+ ++DHQPL N  SL+EK  +VQR  D LS     L+Y+PG+ N  AD +SRLP+PAT++DE    R+ DP
Sbjct:   59 PLCFLSRSTVPNETRWSPTELEAGAIVWAIKKNRTLFYGIPFEVYSDHQPLRNLGSLAEKNNRVQRWYDCLSACTNKLKYRPGRDNANADLMSRLPLPATKEDEAPDARLTDP 171          
BLAST of mRNA_H-paniculata_contig47822.11848.1 vs. uniprot
Match: A0A6H5KAM4_9PHAE (RT_RNaseH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM4_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 2.280e-30
Identity = 58/113 (51.33%), Postives = 78/113 (69.03%), Query Frame = 1
Query:    1 PLVYISRTTDNNEKNWDATDLECAALVWAIKKLRVFLYGIKFDAFTDHQPLLNYISLSEKKPKVQRMCDILSQFQFNLRYKPGKRNQLADALSRLPVPATEDDENA-CRILDP 336
            PL ++SR+T  NE  W  T+LE  A+VWAIKK R   YGI F+ ++DHQPL N  SL+EK  +VQR  D LS + + L+Y+PG+ N  AD +SRLP+PAT++DE    R+ DP
Sbjct:  152 PLCFLSRSTFPNETRWSPTELEAGAIVWAIKKNRTLFYGIPFEVYSDHQPLRNLGSLAEKNNRVQRWYDFLSAYTYELKYRPGRENANADLMSRLPLPATKEDEAPDVRLTDP 264          
BLAST of mRNA_H-paniculata_contig47822.11848.1 vs. uniprot
Match: A0A6H5JWR4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWR4_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 3.310e-29
Identity = 57/113 (50.44%), Postives = 77/113 (68.14%), Query Frame = 1
Query:    1 PLVYISRTTDNNEKNWDATDLECAALVWAIKKLRVFLYGIKFDAFTDHQPLLNYISLSEKKPKVQRMCDILSQFQFNLRYKPGKRNQLADALSRLPVPATEDDENA-CRILDP 336
            PL ++SR+T  NE  W  T LE  A+VWAIK+ R   YGI F+ ++DHQPL N  SL+EK  +VQR  D LS + + L+Y+PG+ N  AD +SRLP+PAT++DE    R+ DP
Sbjct:  152 PLCFLSRSTFPNETRWSPTKLEAGAIVWAIKQNRTLFYGIPFEVYSDHQPLRNLGSLAEKNNRVQRWYDFLSAYTYELKYRPGRENANADLMSRLPLPATKEDEAPDVRLTDP 264          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig47822.11848.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L269_9PHAE8.940e-4465.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJH5_9PHAE5.710e-4364.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPU9_9PHAE3.650e-3767.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKY6_9PHAE9.410e-3765.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRW3_9PHAE5.300e-3153.10Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JJN6_9PHAE7.760e-3151.33RT_RNaseH domain-containing protein (Fragment) n=1... [more]
A0A6H5K8H1_9PHAE8.130e-3162.50RT_RNaseH domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K4J2_9PHAE2.140e-3051.33RT_RNaseH domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KAM4_9PHAE2.280e-3051.33RT_RNaseH domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JWR4_9PHAE3.310e-2950.44Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig47822contigH-paniculata_contig47822:10..351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score91.3
Seed ortholog evalue3.2e-16
Seed eggNOG ortholog7719.XP_002121094.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.K02A2.6-like
EggNOG OGs38F42@33154,3BA5H@33208,3CZSS@33213,48AQP@7711,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelChordata
Best eggNOG OGNA|NA|NA
Exons1
Model size342
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930418.1089807-CDS-H-paniculata_contig47822:9..3511622930418.1089807-CDS-H-paniculata_contig47822:9..351Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47822 10..351 +
1691481283.0384793-CDS-H-paniculata_contig47822:9..3511691481283.0384793-CDS-H-paniculata_contig47822:9..351Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47822 10..351 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig47822.11848.1prot_H-paniculata_contig47822.11848.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig47822 10..351 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig47822.11848.1

>prot_H-paniculata_contig47822.11848.1 ID=prot_H-paniculata_contig47822.11848.1|Name=mRNA_H-paniculata_contig47822.11848.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp
PLVYISRTTDNNEKNWDATDLECAALVWAIKKLRVFLYGIKFDAFTDHQP
LLNYISLSEKKPKVQRMCDILSQFQFNLRYKPGKRNQLADALSRLPVPAT
EDDENACRILDPHE
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mRNA from alignment at H-paniculata_contig47822:10..351+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig47822.11848.1 ID=mRNA_H-paniculata_contig47822.11848.1|Name=mRNA_H-paniculata_contig47822.11848.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=342bp|location=Sequence derived from alignment at H-paniculata_contig47822:10..351+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCTTGGTATACATCAGTCGCACCACTGATAATAACGAGAAGAACTGGGA TGCTACGGATTTGGAGTGCGCTGCTTTGGTATGGGCGATCAAGAAACTGC GAGTCTTTCTGTACGGTATTAAGTTTGACGCTTTCACAGATCATCAGCCG CTTCTCAACTACATTAGTCTGTCGGAGAAAAAGCCGAAGGTCCAACGGAT GTGCGATATACTTAGCCAGTTCCAGTTTAATTTGCGGTATAAACCTGGCA AGCGGAATCAGTTAGCAGATGCCTTGTCCCGTCTGCCCGTCCCTGCCACA GAAGACGACGAAAACGCTTGCCGTATTCTAGACCCACATGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig47822:10..351+

>mRNA_H-paniculata_contig47822.11848.1 ID=mRNA_H-paniculata_contig47822.11848.1|Name=mRNA_H-paniculata_contig47822.11848.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at H-paniculata_contig47822:10..351+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCTTGGTATACATCAGTCGCACCACTGATAATAACGAGAAGAACTGGGA
TGCTACGGATTTGGAGTGCGCTGCTTTGGTATGGGCGATCAAGAAACTGC
GAGTCTTTCTGTACGGTATTAAGTTTGACGCTTTCACAGATCATCAGCCG
CTTCTCAACTACATTAGTCTGTCGGAGAAAAAGCCGAAGGTCCAACGGAT
GTGCGATATACTTAGCCAGTTCCAGTTTAATTTGCGGTATAAACCTGGCA
AGCGGAATCAGTTAGCAGATGCCTTGTCCCGTCTGCCCGTCCCTGCCACA
GAAGACGACGAAAACGCTTGCCGTATTCTAGACCCACATGAACCCTTGGT
ATACATCAGTCGCACCACTGATAATAACGAGAAGAACTGGGATGCTACGG
ATTTGGAGTGCGCTGCTTTGGTATGGGCGATCAAGAAACTGCGAGTCTTT
CTGTACGGTATTAAGTTTGACGCTTTCACAGATCATCAGCCGCTTCTCAA
CTACATTAGTCTGTCGGAGAAAAAGCCGAAGGTCCAACGGATGTGCGATA
TACTTAGCCAGTTCCAGTTTAATTTGCGGTATAAACCTGGCAAGCGGAAT
CAGTTAGCAGATGCCTTGTCCCGTCTGCCCGTCCCTGCCACAGAAGACGA
CGAAAACGCTTGCCGTATTCTAGACCCACATGAA
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