mRNA_H-paniculata_contig478.11845.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig478.11845.1 vs. uniprot
Match: D8LB97_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB97_ECTSI) HSP 1 Score: 345 bits (886), Expect = 5.190e-105 Identity = 178/208 (85.58%), Postives = 182/208 (87.50%), Query Frame = 3
Query: 84 MARIYIGNLPMDVTEKDIDDVFYKFGRIVDIDLKTPARPPAFGFVTFQDARDAEEAVRARDGYDMDGSRLRVEISRGRRDQGFGMGGGGFGGXXXXXXXXXXXGFGGMR------GGAGAQMTEFRVIVTGLPPSASWQDLKDHMRKAGEPTYTDVDHKGGGIVHFRTRDDMEYALRKLDGSDFRNPFEKSRISVLPHRAVGGGRDSR 689
MARIYIGNLPMDVTEKD+DDVFYKFGRIVDIDLKTPARPPAFGF+TFQDARDAEEAVRARDGYDMDGSRLRVEISRGRRD FGMGGGG GG GG R GGAG Q TE+RVIVTGLPPSASWQDLKDHMRKAGEPTYTDVDHKGGGIVHFRTRDDM+YALRKLDGSDFRNPFEKSRISVLPHR VGGGRDSR
Sbjct: 1 MARIYIGNLPMDVTEKDMDDVFYKFGRIVDIDLKTPARPPAFGFITFQDARDAEEAVRARDGYDMDGSRLRVEISRGRRDP-FGMGGGGHGGRMGMP-------MGGGRXXXXXXGGAGFQQTEYRVIVTGLPPSASWQDLKDHMRKAGEPTYTDVDHKGGGIVHFRTRDDMDYALRKLDGSDFRNPFEKSRISVLPHRGVGGGRDSR 200
BLAST of mRNA_H-paniculata_contig478.11845.1 vs. uniprot
Match: A0A835YQ88_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ88_9STRA) HSP 1 Score: 262 bits (669), Expect = 1.700e-75 Identity = 138/199 (69.35%), Postives = 154/199 (77.39%), Query Frame = 3
Query: 84 MARIYIGNLPMDVTEKDIDDVFYKFGRIVDIDLKTPARPPAFGFVTFQDARDAEEAVRARDGYDMDGSRLRVEISRGRRDQGFGMGGGGFGGXXXXXXXXXXXGFGGMRGGAGAQMTEFRVIVTGLPPSASWQDLKDHMRKAGEPTYTDVDHKGGGIVHFRTRDDMEYALRKLDGSDFRNPFEKSRISVLPHRAVGGGR 680
MAR+Y+GNLPM+V EKD++D+FYKFGRI DIDLKTPARPPAF FV F D RDAE+AVRARDGY+MDG RLRVE++RG R XXXXXX G G G Q TE+RVIVTGLPPSASWQDLKDHMRKAG+ YTDVDH+GGGIVH+ TRDDMEYALRKLD S+FRNPF+ S I VLPHR GGR
Sbjct: 1 MARVYVGNLPMNVREKDVEDLFYKFGRIRDIDLKTPARPPAFAFVAFDDVRDAEDAVRARDGYEMDGERLRVELARGARGP---------------PXXXXXXXXXGQPMGGGRQ-TEWRVIVTGLPPSASWQDLKDHMRKAGDVVYTDVDHRGGGIVHYNTRDDMEYALRKLDDSEFRNPFDHSFIRVLPHRGASGGR 183
BLAST of mRNA_H-paniculata_contig478.11845.1 vs. uniprot
Match: A0A836CC30_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC30_9STRA) HSP 1 Score: 262 bits (669), Expect = 1.100e-74 Identity = 134/215 (62.33%), Postives = 157/215 (73.02%), Query Frame = 3
Query: 84 MARIYIGNLPMDVTEKDIDDVFYKFGRIVDIDLKTPARPPAFGFVTFQDARDAEEAVRARDGYDMDGSRLRVEISRGRRDQGFG---------MGGGGFGGXXXXXXXXXXXGFGGMRGG--------AGAQMTEFRVIVTGLPPSASWQDLKDHMRKAGEPTYTDVDHKGGGIVHFRTRDDMEYALRKLDGSDFRNPFEKSRISVLPHRAVGGG 677
MAR+Y+GNLPM+V EKD++D+FYK+GRI DIDLKTPARPP+F FV F+D RDAE+AV RDGY+MDG RLRVE++RG R++GFG GGG GFG RG G + TE+RVIVTGLPPSASWQDLKDHMRKAG+ YTDVDH+GGGIVH+ TR DM+YALRKLD S+FRNPF+KS I VLPHRA G
Sbjct: 1 MARVYVGNLPMNVREKDVEDLFYKYGRIRDIDLKTPARPPSFAFVAFEDVRDAEDAVSGRDGYEMDGQRLRVELARGARERGFGGXXXXXFDERGGG--------------RGFGAGRGXXXXXGPPMGGGRQTEWRVIVTGLPPSASWQDLKDHMRKAGDVVYTDVDHRGGGIVHYATRSDMDYALRKLDDSEFRNPFDKSYIRVLPHRANARG 201
BLAST of mRNA_H-paniculata_contig478.11845.1 vs. uniprot
Match: D8LPT5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPT5_ECTSI) HSP 1 Score: 239 bits (611), Expect = 3.050e-67 Identity = 138/231 (59.74%), Postives = 165/231 (71.43%), Query Frame = 3
Query: 81 TMARIYIGNLPMDVTEKDIDDVFYKFGRIVDIDLKTPARPPAFGFVTFQDARDAEEAVRARDGYDMDGSRLRVEISRGRRDQGFGMGGGGFGGXXXXXXXXXXXG---------------------------FGGMRGG-AGAQMTEFRVIVTGLPPSASWQDLKDHMRKAGEPTYTDVDHKGGGIVHFRTRDDMEYALRKLDGSDFRNPFEKSRISVLPHRAVGGGRDSR 689
TM+R+YIGNLPMD+ EKD++D+FYK+G+I D+ LK P RPPAFGFVTF+D+RDA+EAVRARDGYD DG RLRVE+SRG+R+ G GGFG XXXXXXXXXXX G RGG G + TE+R +VTGLP SASWQDLKDHMRKAG+ Y DVDHKGGG+VHF ++ M+YALRKLDGS+F N ++ + ISVLPHR RDSR
Sbjct: 52 TMSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRARDGYDFDGYRLRVEMSRGKREFG-----GGFGXXXXXXXXXXXXXXXXXXXXXXXXYGXXXGXXXXXXXXXXMGPPRGGFGGGRQTEYRAVVTGLPQSASWQDLKDHMRKAGDVNYADVDHKGGGVVHFNNKEGMDYALRKLDGSEFSNRYDTATISVLPHR--DSVRDSR 275
BLAST of mRNA_H-paniculata_contig478.11845.1 vs. uniprot
Match: A0A6H5KN34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN34_9PHAE) HSP 1 Score: 224 bits (572), Expect = 3.070e-61 Identity = 125/222 (56.31%), Postives = 150/222 (67.57%), Query Frame = 3
Query: 81 TMARIYIGNLPMDVTEKDIDDVFYKFGRIVDIDLKTPARPPAFGFVTFQDARDAEEAVRARDGYDMDGSRLRVEISRGRRDQGFGMGGGGFGGXXXXXXXXXXXGFGGMRGGAG--------------------------------AQMTEFRVIVTGLPPSASWQDLKDHMRKAGEPTYTDVDHKGGGIVHFRTRDDMEYALRKLDGSDFRNPFEKSRISV 650
TM+R+YIGNLPMD+ EKD++D+FYK+G+I D+ LK P RPPAFGFVTF+D RDA+EAVRARDGYD DG RLRVE+SRG+R+ G GGFG XXXXXXX GG G + TE+R +VTGLP SASWQDLKDHMRKAG+ Y DVDHKGGG+VHF R+ M+YALRKLDGS+F N ++ + ISV
Sbjct: 60 TMSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDPRDADEAVRARDGYDFDGYRLRVEMSRGKREFG-----GGFGXXXXXXXX--------XXGGGGXXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXXGRQTEYRAVVTGLPQSASWQDLKDHMRKAGDVNYADVDHKGGGVVHFNNREGMDYALRKLDGSEFSNRYDTAIISV 268
BLAST of mRNA_H-paniculata_contig478.11845.1 vs. uniprot
Match: A0A7S2B3Q3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B3Q3_9STRA) HSP 1 Score: 214 bits (545), Expect = 3.310e-58 Identity = 108/187 (57.75%), Postives = 131/187 (70.05%), Query Frame = 3
Query: 90 RIYIGNLPMDVTEKDIDDVFYKFGRIVDIDLKTPARPPAFGFVTFQDARDAEEAVRARDGYDMDGSRLRVEISRGRRDQGFGMGGGGFGGXXXXXXXXXXXGFGGMRGGAGAQMTEFRVIVTGLPPSASWQDLKDHMRKAGEPTYTDVDHKGGGIVHFRTRDDMEYALRKLDGSDFRNPFEKSRISV 650
RI++GNLPMD+ E+DI+D+FYK+GR+ DI LKTP+RPPAF F+TF D RDA++AVR RDGY + G RLRVEI RGRR G G GG + ++FRVIVTGLP SASWQDLKDH R+AG+ YTDVD GGG+V FRT DMEYAL +LD S FRNPF++S+I V
Sbjct: 8 RIFVGNLPMDIRERDIEDLFYKYGRMSDIHLKTPSRPPAFAFITFDDRRDADDAVRGRDGYSLGGERLRVEIVRGRRGPSRGPAG--------------------RPGGGAGEHSDFRVIVTGLPHSASWQDLKDHFRQAGDVVYTDVDRIGGGLVEFRTLRDMEYALDRLDYSRFRNPFDESKIRV 174
BLAST of mRNA_H-paniculata_contig478.11845.1 vs. uniprot
Match: A0A7S0RPW5_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0RPW5_9CHLO) HSP 1 Score: 200 bits (509), Expect = 7.870e-55 Identity = 108/198 (54.55%), Postives = 134/198 (67.68%), Query Frame = 3
Query: 87 ARIYIGNLPMDVTEKDIDDVFYKFGRIVDIDLKTPARPPAFGFVTFQDARDAEEAVRARDGYDMDGSRLRVEISRGRRDQGFGMGGGGFGGXXXXXXXXXXXGFGGMRGGAGAQMTEFRVIVTGLPPSASWQDLKDHMRKAGEPTYTDV--DHKGG-GIVHFRTRDDMEYALRKLDGSDFRNPFEKSRISVLPHRAVG 671
R+Y+GNLP+DV E++++D+FYK+GRI IDLKTP+RPPAF F+ F D RDA++AVR RDGYD GSR+RVE++ G R G F G FG R T++RVIVTGLP SASWQDLKDHMRKAG+ T+T V D +G G+V F + DDM+ ALRKLDGS+FRNPF+K I V R G
Sbjct: 3 TRVYVGNLPIDVREREVEDLFYKYGRIRSIDLKTPSRPPAFAFLEFDDPRDAQDAVRGRDGYDFYGSRIRVELAHGGRGPPGXXXXGSFRGDRPGPSALGPSPFGPSR------RTDYRVIVTGLPLSASWQDLKDHMRKAGDVTFTQVMKDGRGNMGLVDFSSYDDMQNALRKLDGSEFRNPFDKCTIKVREDRQGG 194
BLAST of mRNA_H-paniculata_contig478.11845.1 vs. uniprot
Match: A0A699ZIZ3_HAELA (Uncharacterized protein (Fragment) n=2 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699ZIZ3_HAELA) HSP 1 Score: 200 bits (508), Expect = 1.430e-54 Identity = 121/212 (57.08%), Postives = 150/212 (70.75%), Query Frame = 3
Query: 87 ARIYIGNLPMDVTEKDIDDVFYKFGRIVDIDLKTPARPPAFGFVTFQDARDAEEAVRARDGYDMDGSRLRVEISRGRRDQGFGMGGGGFGGXXXXXXXXXXXGFGGMRGGAGA-----------QMTEFRVIVTGLPPSASWQDLKDHMRKAGEPTYTDV--DHKGG--GIVHFRTRDDMEYALRKLDGSDFRNPFEKSRISVLPHRAVGGG 677
+R+Y+GNLP+DV E++IDD+FYK+GRI IDLKTP+RPPAF F+ ++D RDA +AVR RDGYD GSR+RVE+S G R G+ +GG XXXXXXX G RGG+ + + T+FRVIVT LP SASWQDLKDHMRKAG+ T+T V D +GG G+V F T DDM+ ALRKLD S+FRNPF+K+ I V R GGG
Sbjct: 4 SRVYVGNLPLDVREREIDDLFYKYGRIRGIDLKTPSRPPAFAFIDYEDPRDAADAVRGRDGYDFYGSRIRVELSHGGRG---GLSSDRYGGGDXXXXXXXR-GRDDYRGGSASAGLGPSPFGPSRRTDFRVIVTNLPLSASWQDLKDHMRKAGDVTFTQVMKDGRGGNMGLVDFSTMDDMQTALRKLDQSEFRNPFDKTLIRVKEDR--GGG 209
BLAST of mRNA_H-paniculata_contig478.11845.1 vs. uniprot
Match: A0A7R9YPW8_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9YPW8_9CHLO) HSP 1 Score: 201 bits (511), Expect = 6.100e-54 Identity = 126/219 (57.53%), Postives = 148/219 (67.58%), Query Frame = 3
Query: 84 MARIYIGNLPMDVTEKDIDDVFYKFGRIVDIDLKTPARPPAFGFVTFQDARDAEEAVRARDGYDMDGSRLRVEISRGRRDQGFGM-GGGGFGGXXXXXXXXXXXGFGGM----------RGGAGAQM--TEFRVIVTGLPPSASWQDLKDHMRKAGEPTYTDVDHKGGG---IVHFRTRDDMEYALRKLDGSDFRNPFEKSRISVLPHRA-VGGGRDSR 689
M++IY+GNLP D+ E++++D+FYKFGRIV IDLKTP RPPAF FVTF+D RDAE+A RARDG + G RLRVEIS G R FG GGGGF G XXXXXXXXX R Q T +RVIVTGLPPS SWQDLKDHMR+AG+ T+T V G G +V + RDDME ALRKLD ++FRNPF+ + I V R VGGG R
Sbjct: 1 MSKIYVGNLPGDIREREVEDLFYKFGRIVSIDLKTPPRPPAFSFVTFEDPRDAEDAARARDGMEYAGQRLRVEISHGGRATNFGRAGGGGFDGGRXXXXXXXXXXXXXXXXXXXXXXXXRASQPIQSRGTGYRVIVTGLPPSCSWQDLKDHMRRAGDVTFTQVVRDGRGMVGLVDYAHRDDMEAALRKLDDTEFRNPFDTTFIRVKEDRGDVGGGGXGR 219
BLAST of mRNA_H-paniculata_contig478.11845.1 vs. uniprot
Match: A0A7S0I1L9_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0I1L9_9CRYP) HSP 1 Score: 198 bits (504), Expect = 1.860e-53 Identity = 102/200 (51.00%), Postives = 135/200 (67.50%), Query Frame = 3
Query: 84 MARIYIGNLPMDVTEKDIDDVFYKFGRIVDIDLKTPARPPAFGFVTFQDARDAEEAVRARDGYDMDGSRLRVEISRGRR-DQGFGMGGGGFGGXXXXXXXXXXXGFGGMRGGAGA------QMTEFRVIVTGLPPSASWQDLKDHMRKAGEPTYTDVDHKGGGIVHFRTRDDMEYALRKLDGSDFRNPFEKSRISVLPHR 662
MARIY+GNLP+D+ E+D+DD+FYK+GRI DI++KTP+RPPAF FV F + DAE+AVR RDG +G+RLRVE+SRG G+ GGG GGAG + +++RVI++GLP SASWQDLKD+ R+AGE YTDVD +GGGIV F DD +YA++K D ++F NPF++ I V+ R
Sbjct: 1 MARIYVGNLPLDIRERDVDDLFYKYGRIRDIEVKTPSRPPAFAFVEFDNLYDAEDAVRGRDGVMFEGARLRVEMSRGTAATYGYDKRGGG--------------------GGAGKAPPRNLRRSDYRVIISGLPKSASWQDLKDYFRQAGEIVYTDVDRQGGGIVEFANEDDRDYAIKKFDDTEFSNPFDRGYIRVMKPR 180 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig478.11845.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig478.11845.1 >prot_H-paniculata_contig478.11845.1 ID=prot_H-paniculata_contig478.11845.1|Name=mRNA_H-paniculata_contig478.11845.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=358bp MARIYIGNLPMDVTEKDIDDVFYKFGRIVDIDLKTPARPPAFGFVTFQDAback to top mRNA from alignment at H-paniculata_contig478:28035..36522+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig478.11845.1 ID=mRNA_H-paniculata_contig478.11845.1|Name=mRNA_H-paniculata_contig478.11845.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8488bp|location=Sequence derived from alignment at H-paniculata_contig478:28035..36522+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig478:28035..36522+ >mRNA_H-paniculata_contig478.11845.1 ID=mRNA_H-paniculata_contig478.11845.1|Name=mRNA_H-paniculata_contig478.11845.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2148bp|location=Sequence derived from alignment at H-paniculata_contig478:28035..36522+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |