mRNA_H-paniculata_contig47792.11842.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig47792.11842.1
Unique NamemRNA_H-paniculata_contig47792.11842.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig47792.11842.1 vs. uniprot
Match: A0A6H5JV56_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV56_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 2.640e-26
Identity = 55/139 (39.57%), Postives = 89/139 (64.03%), Query Frame = 1
Query:    4 FELTGFCDAFYGSGDPEKARSTSGSMYFLSGGVVHFSSSLQKIMAQSTTETELIAMSTCAKQGIYLFGILGELGWKNFGSVCIFCDKKLALLVAGQGNHGSRSKHLAIRLAGLRDWINQRQIIIDHVPTKNQLSDMLTK 420
            FEL  + DA Y S   +  +S +GSM FL+G +++FSS +Q+I+AQS++E E   +++ AK G+Y   ++GELGW       +  D + AL +   G   +RS+H+++R   LR W++  +I +DHVP+ + LSD+LTK
Sbjct:  727 FELPCYSDASYAS--TKDYKSVTGSMVFLAGDLIYFSSRVQRIVAQSSSEGEFFTINSTAKHGVYFSSLMGELGWSQLLKFKLLTDTRSALSLFSNGTFSNRSRHISVRYEALRGWVSSSRIALDHVPSSHMLSDILTK 863          
BLAST of mRNA_H-paniculata_contig47792.11842.1 vs. uniprot
Match: A0A6D2J922_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2J922_9BRAS)

HSP 1 Score: 94.4 bits (233), Expect = 1.080e-19
Identity = 53/140 (37.86%), Postives = 88/140 (62.86%), Query Frame = 1
Query:    1 NFELTGFCDAFYGSGDPEKARSTSGSMYFLSGGVVHFSSSLQKIMAQSTTETELIAMSTCAKQGIYLFGILGELGWKNFGSVCIFCDKKLALLVAGQGNHGSRSKHLAIRLAGLRDWINQRQIIIDHVPTKNQLSDMLTK 420
            +F + GF D+ Y +GD ++ RS +G ++ + G VV + S+LQ+++A STTE E IA+S   K+GI+L G++ ELG+K   +  I+CD + A+ +A       R+KH+A++   +RD      + I  +PT+   +DMLTK
Sbjct:  336 DFRVEGFSDSDY-AGDKDRRRSITGYVFRVGGNVVSWKSNLQQVVALSTTEAEYIALSEAVKEGIWLRGLVEELGFKQ-EATDIWCDSQSAICLAKNNVFHERTKHVAVKYHFIRDETEVGTVKIQKIPTERNPADMLTK 473          
BLAST of mRNA_H-paniculata_contig47792.11842.1 vs. uniprot
Match: Q8T5U5_DROME (Polyprotein n=1 Tax=Drosophila melanogaster TaxID=7227 RepID=Q8T5U5_DROME)

HSP 1 Score: 93.6 bits (231), Expect = 1.420e-19
Identity = 49/134 (36.57%), Postives = 84/134 (62.69%), Query Frame = 1
Query:   19 FCDAFYGSGDPEKARSTSGSMYFLSGGVVHFSSSLQKIMAQSTTETELIAMSTCAKQGIYLFGILGELGWKNFGSVCIFCDKKLALLVAGQGNHGSRSKHLAIRLAGLRDWINQRQIIIDHVPTKNQLSDMLTK 420
            F DA + + D    +S SG  + ++G    + SS Q ++AQS+TE E IA+ST AK+ ++L  +L E+GW + G + + CD   A  +A    +  R+KH+ +R   +RD +N+ +II+++V T+N ++D+LTK
Sbjct:  267 FADADWAN-DKVDRKSYSGYAFLMAGSAFSWGSSKQSVIAQSSTEAEYIALSTAAKEAVFLRRLLQEMGWFDKGPLKLLCDNLSASSIAKNPINHKRTKHIDVRYHFIRDKVNKNEIIVEYVNTQNNVADILTK 399          
BLAST of mRNA_H-paniculata_contig47792.11842.1 vs. uniprot
Match: A0A507DNC7_9FUNG (Uncharacterized protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DNC7_9FUNG)

HSP 1 Score: 90.5 bits (223), Expect = 2.680e-19
Identity = 51/148 (34.46%), Postives = 82/148 (55.41%), Query Frame = 1
Query:    7 ELTGFCDAFYGSGDPEKARSTSGSMYFLSGGVVHFSSSLQKIMAQSTTETELIAMSTCAKQGIYLFGILGELGWKNFGSVCIFCDKKLALLVAGQGNHGSRSKHLAIRLAGLRDWINQRQIIIDHVPTKNQLSDMLTKFCSRPTFSTL 450
            ++ G+ DA Y     +  RSTSG ++ L+G  + + S  QK  A ST E E IA++ CAK+ +++ G+L EL      +V I+ D + A+ +A    H  R+KH+ +R   LRD +   +I + ++ +K  L+D LTK   RP    L
Sbjct:   88 DIVGYSDADYAR-CTDTCRSTSGYVFMLNGAAISWKSQRQKSTALSTAEAEYIALAECAKEALWIQGLLSELSATEQTAVLIYEDNQAAIKLAANPTHHQRTKHIDVRYHFLRDLVGNERIQLQYIESKLMLADALTKPLPRPLLDDL 234          
BLAST of mRNA_H-paniculata_contig47792.11842.1 vs. uniprot
Match: A0A2N9GRU3_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GRU3_FAGSY)

HSP 1 Score: 91.3 bits (225), Expect = 3.630e-19
Identity = 52/137 (37.96%), Postives = 87/137 (63.50%), Query Frame = 1
Query:   10 LTGFCDAFYGSGDPEKARSTSGSMYFLSGGVVHFSSSLQKIMAQSTTETELIAMSTCAKQGIYLFGILGELGWKNFGSVCIFCDKKLALLVAGQGNHGSRSKHLAIRLAGLRDWINQRQIIIDHVPTKNQLSDMLTK 420
            + G+ DA Y +G+ +  RST+G ++ LSGG + + S+LQ I+A STTE E +A++  AK+ ++L G++ ELG  N G V + CD + A+ +A    + +R+KH+ +R   +R+ I    I+++ V T    +DMLTK
Sbjct:  159 VVGYVDADY-AGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWLKGLVKELGL-NQGGVQMHCDSQSAIYLAKNQVYHARTKHIDVRFHKIRELIVTGDIVLEKVHTSENAADMLTK 293          
BLAST of mRNA_H-paniculata_contig47792.11842.1 vs. uniprot
Match: A0A2N9I807_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9I807_FAGSY)

HSP 1 Score: 93.2 bits (230), Expect = 3.690e-19
Identity = 54/145 (37.24%), Postives = 91/145 (62.76%), Query Frame = 1
Query:   10 LTGFCDAFYGSGDPEKARSTSGSMYFLSGGVVHFSSSLQKIMAQSTTETELIAMSTCAKQGIYLFGILGELGWKNFGSVCIFCDKKLALLVAGQGNHGSRSKHLAIRLAGLRDWINQRQIIIDHVPTKNQLSDMLTKFCSRPTFS 444
            + G+ DA Y +G+ +  RST+G ++ LSGG + + S+LQ I+A STTE E +A++  AK+ ++L G++ ELG  N G V + CD + A+ +A    + +R+KH+ +R   +R+ I    I+++ V T    +DMLTK   +P+ S
Sbjct: 1031 VVGYVDADY-AGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWLKGLVKELGL-NQGGVQMHCDSQSAIYLAKNQVYHARTKHIDVRFHKIRELIVTGDIVLEKVHTSENAADMLTKPLPQPSSS 1173          
BLAST of mRNA_H-paniculata_contig47792.11842.1 vs. uniprot
Match: UPI001F4EB49B (Ty1/Copia family ribonuclease HI n=1 Tax=Serratia marcescens TaxID=615 RepID=UPI001F4EB49B)

HSP 1 Score: 89.7 bits (221), Expect = 4.630e-19
Identity = 52/147 (35.37%), Postives = 84/147 (57.14%), Query Frame = 1
Query:   10 LTGFCDAFYGSGDPEKARSTSGSMYFLSGGVVHFSSSLQKIMAQSTTETELIAMSTCAKQGIYLFGILGELGWKNFGSVCIFCDKKLALLVAGQGNHGSRSKHLAIRLAGLRDWINQRQIIIDHVPTKNQLSDMLTKFCSRPTFSTL 450
            L  + DA + +GD E  +STSG  +FL   +V + S  Q+ +A ST E E IA ++C  Q +++   L   G    G + I CD   A+ ++      SR+KH++IR   L++ +++++II+D VPTK QL+D+ TK   R  +  L
Sbjct:   87 LHAYSDADW-AGDSEDRKSTSGGAFFLGNNLVSWHSKKQESVALSTAEAEYIAATSCCTQVVWMREYLKNFGVFQDGPISIKCDNSSAINISKNPVQHSRTKHISIRYHFLKEKVSEKEIILDFVPTKEQLADIFTKPLPREAYEYL 232          
BLAST of mRNA_H-paniculata_contig47792.11842.1 vs. uniprot
Match: A0A2N9I0Q5_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9I0Q5_FAGSY)

HSP 1 Score: 92.8 bits (229), Expect = 4.980e-19
Identity = 54/145 (37.24%), Postives = 91/145 (62.76%), Query Frame = 1
Query:   10 LTGFCDAFYGSGDPEKARSTSGSMYFLSGGVVHFSSSLQKIMAQSTTETELIAMSTCAKQGIYLFGILGELGWKNFGSVCIFCDKKLALLVAGQGNHGSRSKHLAIRLAGLRDWINQRQIIIDHVPTKNQLSDMLTKFCSRPTFS 444
            + G+ DA Y +G+ +  RST+G ++ LSGG + + S+LQ I+A STTE E +A++  AK+ ++L G++ ELG  N G V + CD + A+ +A    + +R+KH+ +R   +R+ I    I+++ V T    +DMLTK  + P+ S
Sbjct: 1034 VVGYVDADY-AGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWLKGLVKELGL-NQGGVQMHCDSQSAIYLAKNQVYHARTKHIDVRFHKIRELIVTGDIVLEKVHTPENAADMLTKPVTTPSSS 1176          
BLAST of mRNA_H-paniculata_contig47792.11842.1 vs. uniprot
Match: A0A2N9EE21_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EE21_FAGSY)

HSP 1 Score: 92.8 bits (229), Expect = 5.000e-19
Identity = 54/148 (36.49%), Postives = 90/148 (60.81%), Query Frame = 1
Query:   10 LTGFCDAFYGSGDPEKARSTSGSMYFLSGGVVHFSSSLQKIMAQSTTETELIAMSTCAKQGIYLFGILGELGWKNFGSVCIFCDKKLALLVAGQGNHGSRSKHLAIRLAGLRDWINQRQIIIDHVPTKNQLSDMLTKFCSRPTFSTLL 453
            + G+ DA Y +G+ +  RST+G ++ LSGG + + S+LQ I+A STTE E +A++  AK+ ++L G++ ELG  N G V + CD + A+ +A    + +R+KH+ +R   +R+ I    I+++ V T    +DMLTK  +   F   L
Sbjct: 1152 VVGYVDADY-AGEVDDKRSTTGYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWLKGLVKELGL-NQGGVQMHCDSQSAIYLAKNQVYHARTKHIDVRFHKIRELIVTGDIVLEKVHTSENAADMLTKLVTTAKFKHCL 1297          
BLAST of mRNA_H-paniculata_contig47792.11842.1 vs. uniprot
Match: UPI00142E1883 (uncharacterized protein LOC103868828 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142E1883)

HSP 1 Score: 92.4 bits (228), Expect = 6.490e-19
Identity = 53/140 (37.86%), Postives = 85/140 (60.71%), Query Frame = 1
Query:    1 NFELTGFCDAFYGSGDPEKARSTSGSMYFLSGGVVHFSSSLQKIMAQSTTETELIAMSTCAKQGIYLFGILGELGWKNFGSVCIFCDKKLALLVAGQGNHGSRSKHLAIRLAGLRDWINQRQIIIDHVPTKNQLSDMLTK 420
            +F + G+CD+ YG GD + A+ST+G ++   G  V + SSLQK++A STTE E IA+S   K+G++L     ELG+    SV IFCD + A+ ++    +  R+KH+A +   +RD I   ++ +  + T N  +D+ TK
Sbjct:  638 DFVVKGYCDSDYG-GDLDNAKSTTGMVFTAGGNPVSWRSSLQKVVALSTTEAEYIALSEAVKEGVWLKRFAEELGFPQ-DSVEIFCDSQSAIALSKNAVYHERTKHMATKYHFIRDLIKVGEVQVLKIATANNPADIFTK 775          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig47792.11842.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JV56_9PHAE2.640e-2639.57Integrase catalytic domain-containing protein n=1 ... [more]
A0A6D2J922_9BRAS1.080e-1937.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
Q8T5U5_DROME1.420e-1936.57Polyprotein n=1 Tax=Drosophila melanogaster TaxID=... [more]
A0A507DNC7_9FUNG2.680e-1934.46Uncharacterized protein n=1 Tax=Powellomyces hirtu... [more]
A0A2N9GRU3_FAGSY3.630e-1937.96Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9I807_FAGSY3.690e-1937.24Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
UPI001F4EB49B4.630e-1935.37Ty1/Copia family ribonuclease HI n=1 Tax=Serratia ... [more]
A0A2N9I0Q5_FAGSY4.980e-1937.24Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9EE21_FAGSY5.000e-1936.49Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
UPI00142E18836.490e-1937.86uncharacterized protein LOC103868828 n=1 Tax=Brass... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig47792contigH-paniculata_contig47792:22..477 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score99.4
Seed ortholog evalue1.6e-18
Seed eggNOG ortholog4565.Traes_5DL_4EB95019D.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37THH@33090,3GG2K@35493,3IKX9@38820,3M2IR@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size456
Cds size456
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930417.2015197-CDS-H-paniculata_contig47792:21..4771622930417.2015197-CDS-H-paniculata_contig47792:21..477Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47792 22..477 +
1691481282.5839114-CDS-H-paniculata_contig47792:21..4771691481282.5839114-CDS-H-paniculata_contig47792:21..477Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47792 22..477 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig47792.11842.1prot_H-paniculata_contig47792.11842.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig47792 22..477 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig47792.11842.1

>prot_H-paniculata_contig47792.11842.1 ID=prot_H-paniculata_contig47792.11842.1|Name=mRNA_H-paniculata_contig47792.11842.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=152bp
NFELTGFCDAFYGSGDPEKARSTSGSMYFLSGGVVHFSSSLQKIMAQSTT
ETELIAMSTCAKQGIYLFGILGELGWKNFGSVCIFCDKKLALLVAGQGNH
GSRSKHLAIRLAGLRDWINQRQIIIDHVPTKNQLSDMLTKFCSRPTFSTL
L*
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mRNA from alignment at H-paniculata_contig47792:22..477+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig47792.11842.1 ID=mRNA_H-paniculata_contig47792.11842.1|Name=mRNA_H-paniculata_contig47792.11842.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=456bp|location=Sequence derived from alignment at H-paniculata_contig47792:22..477+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACTTCGAGCTAACTGGCTTCTGCGACGCCTTCTATGGCAGTGGTGACCC CGAGAAAGCTAGGTCAACCTCGGGAAGCATGTACTTCCTCTCCGGTGGAG TTGTTCATTTCAGTTCGAGTCTACAGAAAATTATGGCTCAGTCAACCACA GAGACGGAACTAATCGCCATGAGCACCTGCGCTAAACAAGGAATTTATCT GTTCGGCATCCTCGGAGAGCTTGGATGGAAGAACTTCGGCAGCGTCTGCA TCTTTTGCGATAAAAAATTAGCTTTACTTGTTGCGGGTCAAGGCAACCAT GGAAGCAGGTCCAAACATCTGGCCATTCGTTTGGCCGGGCTCCGTGATTG GATTAACCAGCGGCAGATAATCATCGACCATGTTCCCACGAAGAACCAGC TCAGCGACATGTTGACCAAGTTCTGCTCAAGACCGACCTTCTCTACCCTA CTGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig47792:22..477+

>mRNA_H-paniculata_contig47792.11842.1 ID=mRNA_H-paniculata_contig47792.11842.1|Name=mRNA_H-paniculata_contig47792.11842.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at H-paniculata_contig47792:22..477+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACTTCGAGCTAACTGGCTTCTGCGACGCCTTCTATGGCAGTGGTGACCC
CGAGAAAGCTAGGTCAACCTCGGGAAGCATGTACTTCCTCTCCGGTGGAG
TTGTTCATTTCAGTTCGAGTCTACAGAAAATTATGGCTCAGTCAACCACA
GAGACGGAACTAATCGCCATGAGCACCTGCGCTAAACAAGGAATTTATCT
GTTCGGCATCCTCGGAGAGCTTGGATGGAAGAACTTCGGCAGCGTCTGCA
TCTTTTGCGATAAAAAATTAGCTTTACTTGTTGCGGGTCAAGGCAACCAT
GGAAGCAGGTCCAAACATCTGGCCATTCGTTTGGCCGGGCTCCGTGATTG
GATTAACCAGCGGCAGATAATCATCGACCATGTTCCCACGAAGAACCAGC
TCAGCGACATGTTGACCAAGTTCTGCTCAAGACCGACCTTCTCTACCCTA
CTGTAGAACTTCGAGCTAACTGGCTTCTGCGACGCCTTCTATGGCAGTGG
TGACCCCGAGAAAGCTAGGTCAACCTCGGGAAGCATGTACTTCCTCTCCG
GTGGAGTTGTTCATTTCAGTTCGAGTCTACAGAAAATTATGGCTCAGTCA
ACCACAGAGACGGAACTAATCGCCATGAGCACCTGCGCTAAACAAGGAAT
TTATCTGTTCGGCATCCTCGGAGAGCTTGGATGGAAGAACTTCGGCAGCG
TCTGCATCTTTTGCGATAAAAAATTAGCTTTACTTGTTGCGGGTCAAGGC
AACCATGGAAGCAGGTCCAAACATCTGGCCATTCGTTTGGCCGGGCTCCG
TGATTGGATTAACCAGCGGCAGATAATCATCGACCATGTTCCCACGAAGA
ACCAGCTCAGCGACATGTTGACCAAGTTCTGCTCAAGACCGACCTTCTCT
ACCCTACTGTAG
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