mRNA_H-paniculata_contig11846.1184.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11846.1184.1
Unique NamemRNA_H-paniculata_contig11846.1184.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11846.1184.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11846contigH-paniculata_contig11846:188..7296 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size232
Cds size225
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11846.1184.1prot_H-paniculata_contig11846.1184.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11846 195..7296 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928895.2973053-UTR-H-paniculata_contig11846:187..1941622928895.2973053-UTR-H-paniculata_contig11846:187..194Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11846 188..194 -
1691480659.8514261-UTR-H-paniculata_contig11846:187..1941691480659.8514261-UTR-H-paniculata_contig11846:187..194Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11846 188..194 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928895.317135-CDS-H-paniculata_contig11846:194..2451622928895.317135-CDS-H-paniculata_contig11846:194..245Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11846 195..245 -
1691480659.8593369-CDS-H-paniculata_contig11846:194..2451691480659.8593369-CDS-H-paniculata_contig11846:194..245Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11846 195..245 -
1622928895.3508883-CDS-H-paniculata_contig11846:5751..58471622928895.3508883-CDS-H-paniculata_contig11846:5751..5847Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11846 5752..5847 -
1691480659.8698227-CDS-H-paniculata_contig11846:5751..58471691480659.8698227-CDS-H-paniculata_contig11846:5751..5847Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11846 5752..5847 -
1622928895.3651679-CDS-H-paniculata_contig11846:7218..72961622928895.3651679-CDS-H-paniculata_contig11846:7218..7296Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11846 7219..7296 -
1691480659.8771157-CDS-H-paniculata_contig11846:7218..72961691480659.8771157-CDS-H-paniculata_contig11846:7218..7296Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11846 7219..7296 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11846.1184.1

>prot_H-paniculata_contig11846.1184.1 ID=prot_H-paniculata_contig11846.1184.1|Name=mRNA_H-paniculata_contig11846.1184.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=75bp
AAVAAAGGGADGGNKGAEAGSPQSVEDLISQLPSSRGDALGAIQEDPFED
AVSEFTTKSSLHAMRRVSKDRFDV*
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mRNA from alignment at H-paniculata_contig11846:188..7296-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11846.1184.1 ID=mRNA_H-paniculata_contig11846.1184.1|Name=mRNA_H-paniculata_contig11846.1184.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7109bp|location=Sequence derived from alignment at H-paniculata_contig11846:188..7296- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGCGGTGGCGGCGGCCGGCGGGGGGGCTGACGGCGGCAATAAGGGTGC
GGAAGCCGGGTCGCCTCAAAGCGTGGAGGTGAGAGGGGAAAGCAGCGGTG
TTTTCACCACTTGGTCGAACACGATGGTTGAGGTAAAAACTACTTAACTC
AGCAATATAGTGCACCCAAAAGAAGGATATCAGAATTTTCTGGTCTAGAT
ATCTGTTCTGAGTTGTGTGCCCCCAAAACACTTTTTGCTCAAATCGGCGC
CGCCCCCGGCAGGCGCCGATTTGATAAGCTCTGCCAACGCATGGGGGTAA
GGATTAGTTTTAGAGTTATTGTTAGTTCTAGCGCTGGTCTTACTCGCGTC
AGGGGCACCACAAAGCGTAAATAAAAAATAAAAAAAAAGTGCCAACCATC
GTATTCGATCAAGTGGTGAGCAGCGCTCGGGGCGAGAGAGGGGAGTTTCG
TAAGCAGTGTATTCGAGAGCTCCACCTACTGGTAAAAGCCTCTCGTGGGA
GTCTTTGAACGATATTACTATTACCTGATGCGCCAACGTGATGATGACGA
TGGTGATGATGGTCATGTTCCACGGGACGGGGGGAGGGGTCTGAGTCACT
GGCCCAGTGGCCTGCTACTAGTGTGTTCTACAAAAAAAGAAGAATACGAT
AGTTTCATCACGTAGATCTCGAGTTCTGTAGGTCGAAGATTCGGAACGCC
TGAAAGTTAAAAATAGCACTGCGAAGGTAGGTTGCAACGCTCCACTAAAG
AGTCAGATTTAACTTGCGGCATTTTTCTCGTTACAGATATATATATATAT
ATATATATATCTATATAAATATATATATATATATATGTATACTATATATA
TAGACAGTGGTACTGGGATTCCCTCAGGCTTGAATCATGTGTGAATATTT
TTGTCAATGATCCTCCTTGTCTAGATGTGTATGTCTGGGTACATTATACA
AACTGGTGACAATGCTGTAGTACTACTCCCTGCCCTCCCTCTCACCCCCC
CGCGGCCGCCGCTCCCTGCTTCCTTCAGATCGAGTGTTATGTTAGCTTAG
CACTTTCTTCCTGTGTTGGTAAAACATGCATGTGAGCGTACCTCTTATCA
CAACTTTCGCAGTTCGTTGTAATGGTACACGGGCAAAAACATGTTGCGGA
CGAGCGAGAGAATTTTGTCTTTCCGTCTTGTTTTTGCTCACAGCTTTCAT
TACTTCTGCATGTTGACCGCGCGACGGCTGCGGATAAATCGCGTGAACAC
CTTTTTTTTTACATGTTGAGTTATTATTTGTTTTTCGGCGACCATGTTTT
GTAACCGTCACAAATTAGTTGTCCCTCCTCTCTTTGGCATTGCTGTCTTC
GTGTTGTGTTGTGTTTTGTCTTGTCTTGTCTTGTCTTGTCTTGATTTGTC
GTCGATGGTGCTGCTCACACTACTCGAAAACGACAAAAATATCATGAAGG
ACTTAATCTCCCAGCTGCCCTCGAGCCGTGGAGATGCGCTCGGAGCCATC
CAGGAAGATCCTTTCGAAGATGCGGTATCAGAGTTCACGACAAAGGTACG
GACTGTCTGTTTGAACAGTGACGGTTCCCATGATCCCGTAATTAGTTAGG
CGCTAGTTGCCCGACTCCCGAGGTTAAACAGGAATTACATGGGGGATAGT
TCGATGATATTCGGTGCTTACGCCCCTTCAGGATGCGAGAGAAGCGGGAA
TCATGACCGATGTTGCTCTTTCGGCGGAGGGAAAAATACCCACGGATTAA
ACAATGCTCTTCTCAGACAGGACAAGAGATTACTCCCTCGCCTATACAGT
TTTTGCCTCTATTGTTATCGTCATTTTTTTAGAATATTAACGCCTATTTG
CGTTGAAACTCCAGCCAAAAAGCAAATATAAAAGAATGTGTTGTGATTGT
AAGCCCTACTTGTTGAGAGGACCTTGGGACGGAAGGCGCGGATGCCTGGG
AGGGTCCGTTGAAGTTTTAGACGGAGGGACTCCGGAGAAGTAGCAGCAGG
TGTAACAGGGCATCTCGAACTTGTAGATTCCCGGCAGGGATGGACGGCGG
TGGCGGTTTTCCTCTTGGCAATTTGGGCAATGGGGAACACACTCCTTTGT
GCAAAGTGACAGAATGCGACACTGAACTGAACGTGGTGGGCTGTAGGCTC
TATGTGTGTGGGGGGTTTCCTAGAGGCCCTGATGCGTCAGTTAGGTTAAT
CCTGAATATCTGACACGGTCAGATTGGGGAGATTCAGAGCTGTCCCGGTC
ATGTGCCCGAGTCTTGGGGGCTTCGCCGGCTGGGAGGTCCCAGCAGGGTT
GATCGGGACGAGTTTTGAATTCTCCTCGCTATGTGTTTCGTCTCTGTGTA
ACCAATTGTGTGCATGTGTGGCGAAAGATCCGGATCCTCTGAACGTGGTC
TCCACATCTTTCCCCTCTTTATCGCGACCTAAGCCCATCTGTGTAAGATG
TGGCTTAGGGCCGTCGTTCGTTTCTTTAATTAGGCGTGAAATGTTTTTGT
GGAGTTACGGGACCTTGGATTCGCGTTCTCCCACTAGTCGCATAAGGTAA
CGTCATCCTCTCTGTAGTATGGTGTTGAATAAACAACGGTGTTAATAGCA
AATGTTGGATGCTACCATTTTGCGTTCTCTCAAGTTTTGACGTGCAATTT
CATAAGCCAATTGTATATTTTCCCGTGCTTTTCAATTTCGACCAAGTCTA
TTGATGTTCGTTGGAATGGTCGTTCGACTGGTACGTGGCCTGTGGGTAGT
TTTTATCGGTTTCAATCGGCTTTTCGGTGCTGGCAGGCTTGACGTTCCGT
CCACCAAATCTGTGTATCTCGGCTAATGTTGGACCACCAGCATTTCTGAT
GTATTTTGTCGTAGGTTGCTTTGAACGCTAGGTGTCCTCCTGATAAAGCA
TGATCATGGCATATGTCTAGTACTAGACTGGTTGACGGTTGTGGTAGAAC
CAATTGGACTCGAAATGTACTTCACTGACGTAGGTGGCCTGGTAGGTATG
GTTTGAACAACAATCCGGCTTGCAGCGAATAGTAACACATGGTCGTCGCG
GTTTCATTTGTTGGTATTGGGGGCTTCGTTGTTGGTGATGTATGTAGTCT
ATGTATGGCCCATATTCTATGGCTTGTTTTTCACGTAGTTTCTCGTAGTT
GACCGGTGTAAAAATACTCGTTGCGCTGGTGTGTAAATGCTTTCACCGAG
AAGAGGTCTCTGTCACTTGACACTGGTTCTAATTCATCCAATTTTCCAGC
ATCTGATTGATATGGGTGGATTGGTTTGGTTGTTGGTACGTTGGGGTCGT
CTGGTACGTTTCTGTATATTGGTGCTATTATATAGTAATGGTTTTGTCGT
GCCTTCTTGCTCGAATTTATATAACCTTGATAATGGGTCCGGAGCGACCT
TCAGTTCACGTAGCTTATGTTTTGCTGAGAATTCAAACGACTGTAGTGCG
ATAGCCCACCTAGTCAGCATGTTATTAGTGTCCTTCATCGTGTACAGGTT
CCTTAGCGCCGCATGGTCCGTTAGACATGGAAGTATTTCCCCCATAGAAA
TGGGCGCCAGCGTGGAATGGCTAATACTACCGTGTAACAGTTTTTTATTA
TGGGTGAACACTGTCGTTGAGCGTTGTGAAATCGTTGACTGAAGTACGCG
ACGATGGCTAAGTCGTCGCCTTTCTGTTGGGCTAGGAACGCTCGGGCTCC
CGCTTCGCTGGCATGGACATATATCACGAATTCTTTGGAGAAATCCGGAT
TTTGATTTTTTTTCTTGAAAGAAGAGGAGGAAACCTTTGCCCAACACTTA
CCCCGATATTCGGGTTCGTGTGTCAGTTGCCCGAAGGTCCGACTAGACAA
TCTTGCGGCTGTCATGTGGGGAAGGCACCCTGAGCGTTCGCCCGCCCTTT
GCTCAGGGTAGTGTGGGACTCGCACCCACTAAAACCCCCTATGTTTTTCC
CCTCAACTTGGCGCAGTACACGCGCCGCCTTGCTCAGTGAGCTTCGGCCC
TAGTGGAGAAATCCGGAAAATTCAGTACGGGTGCTTCCGTCAGTAGTTGT
TCTGCTTTTGCGGAAGCTTTGTCGTGTTCTGCATTCCAATATTATGAGAT
TCCTTTGGCGGTTTCATTTTTTGGTAGTCACCAGTGGTCTTATTACTGTT
GCTAGATTTGGTATGAATTTCCTTACGAAAGGTATCATGCCTAGCACAGA
TCGTAACTCCTTGATGTTTGTGGGGCGTGGTGAATCCACCACAGCCTTAA
TCCGGTCTTCTCCTATCTTGATTTCCTCGGCAGATAAGGTATGACCAAGA
TAGTTTACTTCTTTCGGTCCGAATTGTACTTTGGCAGGTTTGAGAGTAAG
ACCTGCTTGTAATGCCTTGAAGGTGTTCCCTAATAGTGTAAGATGCTCTT
CCCAAGTTGATGAGCAGCAGATCACGTCGTCCATATACACAGTAGGAGTC
CGCTTTTTGCGCCGGAATGCGCAAAGGTAAGACTCATAATGCGTAAGAAT
AGGAACGGTGCATTTTCTATTTCAGATGGGAGGCGTTTGGAAATCCATTT
CCCTTTTGACGTTACAAAGGTTTTTTTTTCTTGCTCGTTTTCTGCAACCT
TGATTTGGTGATAACTGTTCTGCACGCCACATACTGTTATGTGCCATGCT
CCAGCTACCGTATCTCTGTCATGGGATTCGATATCAGGTAGTGGCCGCGA
CTTCCGGTCTAAAATAGTTGTTCACTAGTGTTCTGTAGTCCCCACAGAAA
ACCGTGGCGTACCATCCGTTTCAGCAACGAGGGTAACTGCCGAGCCGATG
GACTCGGTCGCTGTTCGATGATCCTGTCTTGTTTCATTTATACAAAATAT
TGATCAACGACTTACTGTGCTCGCGGGTTTGTGCGTTACGGAGTTCTGTC
GAATCGTGAGGTACCTGGTTGGAGAGGCAACGTTGCCTCTTTCAGTGTAC
ACCAGCCTAGCTCTCTTGCTGACAGGTCAAACACTGATATATATATATAT
TTGACACAAAGGTCTAGTACTTGTGAGCATTAGTGAGGTAAAAATTTTGT
GTTATCGAACGCATGTTGGAGTGCCTCTTTTAAATATTCCCTATTGCACT
GTTGTCGTTTGTTCGATTTTCTCTATTGCACTGACAACGTTTGCCTGATT
GCTTTATGGGTATGATGTATCCCAAAAGAGTGCCTCGCTTCAGGTAGATT
TATCTGTTGGATGGGTTGGCTATTTGGACGAAAGCGGATTTATCTGTGGC
TGACCACGAGCATACGGCCCGTGCTACTGTTATATAATAGTAGTTGTAAT
GCGTCCGATGCTTTGCCTGACCGTATCTCATCCGCCGTTACTATTCGCGG
TTCTAATGGTGCTATTGTTTTGATTGGCTTCGTTGTTGTTGTTGTTGTTG
TTGTTGTAATGCTACCGCCATTTCGTGTCGTGACTCGACTCTTCTGAAGT
GTCTAAGCTCATTGCCGAATAACGGTTGGTGTATCGACGGTGGTCCTCTT
ATGGTGGGTATTACGTTTCCGATATGACGCCCTTAGTGTTACTGCTGAGT
TACGGAAATACAGCTGTTCTGTTTCCCAATATAATGCAACACCAAAGGCA
CTCATGATGGAATTTCAATGAGCACGTAATCCGTACCTAGACCATGTAGT
AGTACTAGAGCCTCGACTGGCAATGAATTTTCACCTATTAATATTGTCAG
GTTGAATGGCATCAATCCTAGAATGTTGAAGGGTGATCCGTTTGCGCTTC
GTAGATTGATTCTGTAGATGGGGGTACAGATCGTATGAACTCCATGTTGA
TACACGATACGTCGCTCGCTGTATCCATCGTTATGGCTGGGACTGGCGGG
TCGTTCGTTTACTCTGGCGGGTACTTGGAACGCGAGTGGATGAAAAATTT
CCGTGTCCCTGTTTGATTTGTTGGGGTATTTTTGATAGCGTCGAGGTTTG
AAATCCCTCATATTGTTTCTTGTCCCGTGGTGCACTCACTCAAAGGGTAC
GATTGCATTCTGGTGTGCCATGAGTAGTTGGTTAAGTGACTTCTCAGCTG
TATCGCACAAGATTAGGAGCTGGTGTTTAATCGCACGTCTGTCATATTTC
TTCTTCGTGACAGTTGTCTGCGAAGTTGATTTTAATGTGTGTGTGGTACT
TACTTAAAATATTTGGTATGTCTTCTCAAGGGTCTCCCCTGATAATCACG
GTTGGAGGTAAACGTCGGATGGTTTCTTGGTGGACCGATTGTTTACATTC
ATCTGACCCACACCTTGGGTGTTAGATTCTGACCAGTAGGGGTCGTCAAT
ATGACTTCTGTGCTTGCGGGTGGTCCCTGTTTTCTGGCTGGGGTGGCTTG
GAATGTTAACGTGGACTGCTATTGGTTGCTTATCAGTCCTATTTTGTTGT
CCCTCTGCCCTATCTATGTGGTTAGGGCCTAGTGTTGTGTGTTGTTTGTT
TCTTGTTGTTTTTAGCGGATGTGGTGACATGATGAAGCGATCTCGAAATT
CGGGCGAAACGTGAAAAATCCGATTTTTTCCACTGTGCCTTGGGGAATTT
TTAATTCTGCGATAATTAATCATTGCTCAACCTCGGCTATCAACTTTCAA
ATGCTCATGATTTCGCCTGTATGTATATATATATCCGCAAGCGATGGCCC
TTTAAAAAAAAAAGTTATTTGTTGCAGCAAATTGTGCTACAATAAACTTC
CTCTCGTCGTGCTTATTGGTGCTGGTATTTGTCACATAATATCCAAATAC
AAGCTGCGTAGAGCCCTGCCCCGTGTTTTATGTCTTTCTTTTTTTTTCGC
TTTAGACAATATGCAGCCAAGATTGTAGTCTGAGTAAACTCGGAAGGTAC
TTATGCGACAAATACCTTATGTAGAGTTCGAATGCAGAAAACGGGGCAGT
CAGTCGTCTTTTTTTTTTTTTTTTTTTTTTCATTTTGCTAATAAGTTGTA
TAACTTTGACATGGGTACAATGGAGCTGTAATATGGTGTTCCTTTTTTAC
AGCTCCACCTCTCCCCCGCTCCCTTCTCCATTTTTCCGATGTGTCCCGCA
GTCTTCTCTACACGCGATGAGGCGTGTCAGCAAGGACCGCTTCGACGTCT
AACCTTGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig11846:188..7296-

>mRNA_H-paniculata_contig11846.1184.1 ID=mRNA_H-paniculata_contig11846.1184.1|Name=mRNA_H-paniculata_contig11846.1184.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at H-paniculata_contig11846:188..7296- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGCGGTGGCGGCGGCCGGCGGGGGGGCTGACGGCGGCAATAAGGGTGC
GGAAGCCGGGTCGCCTCAAAGCGTGGAGGCGGCGGTGGCGGCGGCCGGCG
GGGGGGCTGACGGCGGCAATAAGGGTGCGGAAGCCGGGTCGCCTCAAAGC
GTGGAGGACTTAATCTCCCAGCTGCCCTCGAGCCGTGGAGATGCGCTCGG
AGCCATCCAGGAAGATCCTTTCGAAGATGCGGTATCAGAGTTCACGACAA
AGGACTTAATCTCCCAGCTGCCCTCGAGCCGTGGAGATGCGCTCGGAGCC
ATCCAGGAAGATCCTTTCGAAGATGCGGTATCAGAGTTCACGACAAAGTC
TTCTCTACACGCGATGAGGCGTGTCAGCAAGGACCGCTTCGACGTCTAAT
CTTCTCTACACGCGATGAGGCGTGTCAGCAAGGACCGCTTCGACGTCTAA
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