mRNA_H-paniculata_contig47789.11840.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig47789.11840.1
Unique NamemRNA_H-paniculata_contig47789.11840.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig47789.11840.1 vs. uniprot
Match: A0A445M2Q0_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445M2Q0_GLYSO)

HSP 1 Score: 57.0 bits (136), Expect = 3.090e-7
Identity = 33/86 (38.37%), Postives = 56/86 (65.12%), Query Frame = 1 
Query:   22 ESWICDSGATGHATPSAANMSSYRQVK-ETLRITSGQVIPIVGRGNLSMKFRTSNGNMPFSVLNVAHAPELHYNLFSLRKMADGGN 276
            +SWI DSGA+ H TPS   +S+Y   +   + +  G+ + IVGRG++++K  TS+G++ +++ NV H P L  NL S+ ++ D G+
Sbjct:  265 DSWIMDSGASFHTTPSKDLLSNYVSGRFGKVYLADGKSLDIVGRGDINIK--TSSGSL-WTLHNVRHIPALKRNLISIGQLDDEGH 347
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BLAST of mRNA_H-paniculata_contig47789.11840.1 vs. uniprot
Match: A0A445M280_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Glycine soja TaxID=3848 RepID=A0A445M280_GLYSO)

HSP 1 Score: 57.0 bits (136), Expect = 3.130e-7
Identity = 33/86 (38.37%), Postives = 56/86 (65.12%), Query Frame = 1 
Query:   22 ESWICDSGATGHATPSAANMSSYRQVK-ETLRITSGQVIPIVGRGNLSMKFRTSNGNMPFSVLNVAHAPELHYNLFSLRKMADGGN 276
            +SWI DSGA+ H TPS   +S+Y   +   + +  G+ + IVGRG++++K  TS+G++ +++ NV H P L  NL S+ ++ D G+
Sbjct: 1161 DSWIMDSGASFHTTPSKDLLSNYVSGRFGKVYLADGKSLDIVGRGDINIK--TSSGSL-WTLHNVRHIPALKRNLISIGQLDDEGH 1243
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BLAST of mRNA_H-paniculata_contig47789.11840.1 vs. uniprot
Match: A0A151QVU7_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151QVU7_CAJCA)

HSP 1 Score: 54.3 bits (129), Expect = 2.550e-6
Identity = 32/87 (36.78%), Postives = 56/87 (64.37%), Query Frame = 1 
Query:   22 ESWICDSGATGHATPSAANMSSYRQVK-ETLRITSGQVIPIVGRGNLSMKFRTSNGNMPFSVLNVAHAPELHYNLFSLRKMADGGNK 279
            ESWI DSGA+ H TPS   +++Y   +   + +  G+ + IVG+G++++  RTS+G+  +++ NV H P L  NL S+ ++ D G++
Sbjct:  288 ESWIMDSGASFHTTPSNELLTNYVSGRFGKVYLADGKPLNIVGKGDIAI--RTSSGSH-WTLKNVRHIPALKRNLISVGQLDDEGHE 371
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BLAST of mRNA_H-paniculata_contig47789.11840.1 vs. uniprot
Match: A0A151TNK0_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151TNK0_CAJCA)

HSP 1 Score: 54.3 bits (129), Expect = 2.730e-6
Identity = 32/87 (36.78%), Postives = 56/87 (64.37%), Query Frame = 1 
Query:   22 ESWICDSGATGHATPSAANMSSYRQVK-ETLRITSGQVIPIVGRGNLSMKFRTSNGNMPFSVLNVAHAPELHYNLFSLRKMADGGNK 279
            ESWI DSGA+ H TPS   +++Y   +   + +  G+ + IVG+G++++  RTS+G+  +++ NV H P L  NL S+ ++ D G++
Sbjct:  266 ESWIMDSGASFHTTPSNELLTNYVSGRFGKVYLADGKPLNIVGKGDIAI--RTSSGSH-WTLKNVRHIPALKRNLISVGQLDDEGHE 349
[Close]
BLAST of mRNA_H-paniculata_contig47789.11840.1 vs. uniprot
Match: H3H469_PHYRM (Retrotran_gag_3 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H469_PHYRM)

HSP 1 Score: 50.4 bits (119), Expect = 5.790e-5
Identity = 28/89 (31.46%), Postives = 48/89 (53.93%), Query Frame = 1 
Query:   19 EESWICDSGATGHATPSAANMSSYRQV-KETLRITSGQVIPIVGRGNLSMKFRTSNGNMPF-SVLNVAHAPELHYNLFSLRKMADGGNK 279
            + +W  DSG T + T S       + +  +T+ +     IPI+G+G ++M    + G+    S+ +V +APEL +NL S+R+  DG  K
Sbjct:  378 DPAWTIDSGCTRYVTSSPHWFEDLKPIIGKTITVGGNHQIPILGKGTVNMTVTDTKGSKRIISLSDVLYAPELKFNLLSVRQAVDGDYK 466
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig47789.11840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A445M2Q0_GLYSO3.090e-738.37Retrovirus-related Pol polyprotein from transposon... [more]
A0A445M280_GLYSO3.130e-738.37Retrovirus-related Pol polyprotein from transposon... [more]
A0A151QVU7_CAJCA2.550e-636.78Retrovirus-related Pol polyprotein from transposon... [more]
A0A151TNK0_CAJCA2.730e-636.78Retrovirus-related Pol polyprotein from transposon... [more]
H3H469_PHYRM5.790e-531.46Retrotran_gag_3 domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig47789contigH-paniculata_contig47789:1125..1433 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score65.5
Seed ortholog evalue1.7e-08
Seed eggNOG ortholog161934.XP_010672823.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs37Z1Z@33090,3GN55@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size309
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930417.0033903-CDS-H-paniculata_contig47789:1124..14331622930417.0033903-CDS-H-paniculata_contig47789:1124..1433Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47789 1125..1433 -
1691481282.478444-CDS-H-paniculata_contig47789:1124..14331691481282.478444-CDS-H-paniculata_contig47789:1124..1433Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47789 1125..1433 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig47789.11840.1prot_H-paniculata_contig47789.11840.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig47789 1125..1433 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig47789.11840.1

>prot_H-paniculata_contig47789.11840.1 ID=prot_H-paniculata_contig47789.11840.1|Name=mRNA_H-paniculata_contig47789.11840.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
LGVGVEEESWICDSGATGHATPSAANMSSYRQVKETLRITSGQVIPIVGR
GNLSMKFRTSNGNMPFSVLNVAHAPELHYNLFSLRKMADGGNKYIWDCDG
IIV
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mRNA from alignment at H-paniculata_contig47789:1125..1433-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig47789.11840.1 ID=mRNA_H-paniculata_contig47789.11840.1|Name=mRNA_H-paniculata_contig47789.11840.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=309bp|location=Sequence derived from alignment at H-paniculata_contig47789:1125..1433- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTGGCGTTGGAGTAGAGGAAGAGTCGTGGATTTGTGATAGTGGGGCCAC
AGGTCATGCAACACCATCTGCGGCTAACATGTCTAGCTATAGGCAAGTTA
AAGAGACGCTGCGGATTACATCAGGACAAGTGATCCCGATTGTAGGTCGG
GGAAACCTGAGCATGAAATTTAGGACGAGTAATGGAAATATGCCTTTCTC
GGTTCTGAATGTCGCACATGCCCCTGAACTGCACTACAATTTATTTTCGC
TGAGGAAAATGGCCGATGGCGGTAACAAATATATTTGGGATTGTGATGGA
ATTATTGTT
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Coding sequence (CDS) from alignment at H-paniculata_contig47789:1125..1433-

>mRNA_H-paniculata_contig47789.11840.1 ID=mRNA_H-paniculata_contig47789.11840.1|Name=mRNA_H-paniculata_contig47789.11840.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig47789:1125..1433- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTGGCGTTGGAGTAGAGGAAGAGTCGTGGATTTGTGATAGTGGGGCCAC
AGGTCATGCAACACCATCTGCGGCTAACATGTCTAGCTATAGGCAAGTTA
AAGAGACGCTGCGGATTACATCAGGACAAGTGATCCCGATTGTAGGTCGG
GGAAACCTGAGCATGAAATTTAGGACGAGTAATGGAAATATGCCTTTCTC
GGTTCTGAATGTCGCACATGCCCCTGAACTGCACTACAATTTATTTTCGC
TGAGGAAAATGGCCGATGGCGGTAACAAATATATTTGGGATTGTGATGGA
ATTATTGTTCTTGGCGTTGGAGTAGAGGAAGAGTCGTGGATTTGTGATAG
TGGGGCCACAGGTCATGCAACACCATCTGCGGCTAACATGTCTAGCTATA
GGCAAGTTAAAGAGACGCTGCGGATTACATCAGGACAAGTGATCCCGATT
GTAGGTCGGGGAAACCTGAGCATGAAATTTAGGACGAGTAATGGAAATAT
GCCTTTCTCGGTTCTGAATGTCGCACATGCCCCTGAACTGCACTACAATT
TATTTTCGCTGAGGAAAATGGCCGATGGCGGTAACAAATATATTTGGGAT
TGTGATGGAATTATTGTT
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