mRNA_H-paniculata_contig47786.11839.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig47786.11839.1
Unique NamemRNA_H-paniculata_contig47786.11839.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig47786.11839.1 vs. uniprot
Match: A0A6H5JIQ2_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIQ2_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 8.660e-18
Identity = 40/70 (57.14%), Postives = 50/70 (71.43%), Query Frame = -3 
Query:    2 GPRRRGGGRVPFSLATLFATCEHMDAALREERPRDKRSNLPHCYATDIQVPKNFDKAMSSEHSELWEDSV 211
            GP   GG   P   AT+FAT E +DAALR E P DK  +LPHC A+D++VPK F +AM S+HSELW+D+V
Sbjct:   47 GPVDSGGRWRPQMFATMFATREDVDAALRAESPPDKMPDLPHCVASDLRVPKTFKEAMRSQHSELWDDAV 116
[Close]
BLAST of mRNA_H-paniculata_contig47786.11839.1 vs. uniprot
Match: A0A6H5KAG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG7_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 3.380e-17
Identity = 40/65 (61.54%), Postives = 49/65 (75.38%), Query Frame = -3 
Query:    2 GGGRVPFSLATLFATCEHMDAALREERPRDKRSNLPHCYATDIQVPKNFDKAMSSEHSELWEDSV 196
            G GR P   AT+FAT E +DAALR ERP DK  +LPHC A+D++VPK F +AM S+HSELW D+V
Sbjct:   53 GEGR-PQMFATMFATREDVDAALRAERPPDKMPDLPHCLASDLRVPKTFKEAMRSQHSELWNDTV 116
[Close]
BLAST of mRNA_H-paniculata_contig47786.11839.1 vs. uniprot
Match: A0A6H5K8C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8C0_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 4.140e-17
Identity = 41/70 (58.57%), Postives = 50/70 (71.43%), Query Frame = -3 
Query:    2 GPRRRGGGRVPFSLATLFATCEHMDAALREERPRDKRSNLPHCYATDIQVPKNFDKAMSSEHSELWEDSV 211
            GP   GGG  P   AT+ AT E +DAALR ERP DK  +LPHC A D++VPK F +AM S+HSELW+D+V
Sbjct:  298 GPVDSGGGWSPQMFATMLATREDVDAALRAERPPDKMPDLPHCLANDLRVPKTFKEAMRSQHSELWDDAV 367
[Close]
BLAST of mRNA_H-paniculata_contig47786.11839.1 vs. uniprot
Match: A0A6H5KXC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXC1_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 6.080e-17
Identity = 41/70 (58.57%), Postives = 50/70 (71.43%), Query Frame = -3 
Query:    2 GPRRRGGGRVPFSLATLFATCEHMDAALREERPRDKRSNLPHCYATDIQVPKNFDKAMSSEHSELWEDSV 211
            GP   GGG  P   AT+FAT E +DAALR ERP DK  +LPHC A+D++ PK F +AM S+HSELW D+V
Sbjct:  367 GPVDSGGGWRPQMFATMFATREDVDAALRAERPPDKMPDLPHCLASDLRAPKTFKEAMRSQHSELWNDAV 436
[Close]
BLAST of mRNA_H-paniculata_contig47786.11839.1 vs. uniprot
Match: A0A6H5JD95_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD95_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 8.100e-17
Identity = 40/70 (57.14%), Postives = 51/70 (72.86%), Query Frame = -3 
Query:    2 GPRRRGGGRVPFSLATLFATCEHMDAALREERPRDKRSNLPHCYATDIQVPKNFDKAMSSEHSELWEDSV 211
            GP   GGG  P   AT+FAT E +DAALR ERP DK  +LPHC A+D++ PK F++AM S+HSELW D++
Sbjct:  557 GPVDSGGGGRPQMFATMFATREDVDAALRAERPPDKMPDLPHCMASDLREPKTFNEAMRSQHSELWNDAI 626
[Close]
BLAST of mRNA_H-paniculata_contig47786.11839.1 vs. uniprot
Match: A0A6H5JX85_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX85_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 8.280e-17
Identity = 40/70 (57.14%), Postives = 51/70 (72.86%), Query Frame = -3 
Query:    2 GPRRRGGGRVPFSLATLFATCEHMDAALREERPRDKRSNLPHCYATDIQVPKNFDKAMSSEHSELWEDSV 211
            GP   GGG  P   AT+FAT E +DAALR ERP DK  +LPHC A+D++ PK F++AM S+HSELW D++
Sbjct:  609 GPVDSGGGGRPQMFATMFATREDVDAALRAERPPDKMPDLPHCMASDLREPKTFNEAMRSQHSELWNDAI 678
[Close]
BLAST of mRNA_H-paniculata_contig47786.11839.1 vs. uniprot
Match: A0A6H5JFF3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFF3_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 1.170e-16
Identity = 41/69 (59.42%), Postives = 51/69 (73.91%), Query Frame = -3 
Query:    2 PRRRGGGRVPFSLATLFATCEHMDAALREERPRDKRSNLPHCYATDIQVPKNFDKAMSSEHSELWEDSV 208
            P   G G  P   AT+FAT E +DAALR ERP DK ++LPHC A+D++VPK F KAM S+HSELW+D+V
Sbjct:  377 PVDSGRGWRPQMFATMFATREDVDAALRAERPPDKMADLPHCLASDLRVPKTFKKAMRSQHSELWDDAV 445
[Close]
BLAST of mRNA_H-paniculata_contig47786.11839.1 vs. uniprot
Match: A0A6H5JMD2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMD2_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.550e-16
Identity = 36/57 (63.16%), Postives = 46/57 (80.70%), Query Frame = -3 
Query:    2 LATLFATCEHMDAALREERPRDKRSNLPHCYATDIQVPKNFDKAMSSEHSELWEDSV 172
             AT+FAT E +DAALR ERP DK  +LPHC A+D++VPK F +AM S+HSELW+D+V
Sbjct:    2 FATMFATREDVDAALRAERPPDKMPDLPHCLASDLRVPKIFKEAMRSKHSELWDDAV 58
[Close]
BLAST of mRNA_H-paniculata_contig47786.11839.1 vs. uniprot
Match: A0A6H5JM35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM35_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 2.280e-16
Identity = 41/70 (58.57%), Postives = 50/70 (71.43%), Query Frame = -3 
Query:    2 GPRRRGGGRVPFSLATLFATCEHMDAALREERPRDKRSNLPHCYATDIQVPKNFDKAMSSEHSELWEDSV 211
            GP   GGG  P   AT+ AT E +DAALR ERP DK  +LPHC A+D++VPK F +AM S+HSELW D+V
Sbjct:  392 GPVDSGGGWRPQIFATMVATGEDVDAALRAERPPDKMPDLPHCLASDLRVPKTFKEAMRSQHSELWNDAV 461
[Close]
BLAST of mRNA_H-paniculata_contig47786.11839.1 vs. uniprot
Match: A0A6H5K3I1_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3I1_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 5.950e-16
Identity = 41/70 (58.57%), Postives = 50/70 (71.43%), Query Frame = -3 
Query:    2 GPRRRGGGRVPFSLATLFATCEHMDAALREERPRDKRSNLPHCYATDIQVPKNFDKAMSSEHSELWEDSV 211
            GP   GGG  P   AT+FAT E +DAALR ERP DK  +LPHC A+D++ PK F++AM S HSELW D+V
Sbjct: 1528 GPVDSGGGGRPQMFATMFATREDVDAALRAERPPDKMPDLPHCMASDLREPKTFNEAMRSLHSELWGDAV 1597
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig47786.11839.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIQ2_9PHAE8.660e-1857.14Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAG7_9PHAE3.380e-1761.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8C0_9PHAE4.140e-1758.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXC1_9PHAE6.080e-1758.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JD95_9PHAE8.100e-1757.14Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JX85_9PHAE8.280e-1757.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFF3_9PHAE1.170e-1659.42Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JMD2_9PHAE1.550e-1663.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JM35_9PHAE2.280e-1658.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3I1_9PHAE5.950e-1658.57Integrase catalytic domain-containing protein n=5 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig47786contigH-paniculata_contig47786:210..845 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size638
Cds size489
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930416.9467602-CDS-H-paniculata_contig47786:209..6981622930416.9467602-CDS-H-paniculata_contig47786:209..698Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47786 210..698 +
1691481282.458067-CDS-H-paniculata_contig47786:209..6981691481282.458067-CDS-H-paniculata_contig47786:209..698Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47786 210..698 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930416.9642675-UTR-H-paniculata_contig47786:698..8451622930416.9642675-UTR-H-paniculata_contig47786:698..845Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig47786 699..845 +
1691481282.4693568-UTR-H-paniculata_contig47786:698..8451691481282.4693568-UTR-H-paniculata_contig47786:698..845Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig47786 699..845 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig47786.11839.1prot_H-paniculata_contig47786.11839.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig47786 210..698 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig47786.11839.1

>prot_H-paniculata_contig47786.11839.1 ID=prot_H-paniculata_contig47786.11839.1|Name=mRNA_H-paniculata_contig47786.11839.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=163bp
PPSLPIAPSAPSSSPYQSFSAPGCRWRSSAVDSSACRVGVPREGQRPCAH
RWRIVSQARTVLCRPPAVVALLFRVLRRRWRRRFIGWVTASSVDGVASGE
RRDQGRPIHHREKSETVLEGTTSRRRRERVVQLRRRFAETLLLAMLLLHE
SYTVAPCAMARR*
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mRNA from alignment at H-paniculata_contig47786:210..845+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig47786.11839.1 ID=mRNA_H-paniculata_contig47786.11839.1|Name=mRNA_H-paniculata_contig47786.11839.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=636bp|location=Sequence derived from alignment at H-paniculata_contig47786:210..845+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACCGAGTCTTCCCATAGCTCCGAGTGCTCCGAGCTCATCGCCTTATCA
AAGTTTTTCGGCACCTGGATGTCGGTGGCGTAGCAGTGCGGTAGATTCGA
GCGCTTGTCGCGTGGGCGTTCCTCGCGAAGGGCAGCGTCCATGTGCTCAC
AGGTGGCGAATAGTGTCGCAAGCGAGAACGGTACTCTGCCGCCCCCCCGC
CGTCGTGGCCCTTCTTTTTCGTGTTCTGCGGCGGCGATGGCGGCGACGGT
TTATCGGGTGGGTCACGGCGTCCTCCGTCGACGGCGTCGCGAGTGGCGAG
CGACGAGACCAGGGCCGTCCTATCCATCATCGAGAGAAGTCCGAGACGGT
GTTGGAGGGCACCACTTCCAGACGGAGACGAGAGAGGGTGGTACAATTGC
GGCGGCGGTTCGCGGAGACGCTGTTGTTGGCGATGCTGCTCCTCCATGAA
TCGTACACCGTCGCCCCGTGTGCGATGGCTCGACGTTGATGTTGACGGGC
GGAGGCGGCGGCGATGGTGCTGCAGAGGATACTGCTGATGAACTGGCAAC
GGAAATCGGGGAAGGAGCGACCGAATCGGTGAACATCGGTGGGGAAGTAG
CGGCAGGTGGCGCGGCGGCAGGCGCAGGGGTGAACG
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Coding sequence (CDS) from alignment at H-paniculata_contig47786:210..845+

>mRNA_H-paniculata_contig47786.11839.1 ID=mRNA_H-paniculata_contig47786.11839.1|Name=mRNA_H-paniculata_contig47786.11839.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=978bp|location=Sequence derived from alignment at H-paniculata_contig47786:210..845+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACCGAGTCTTCCCATAGCTCCGAGTGCTCCGAGCTCATCGCCTTATCA
AAGTTTTTCGGCACCTGGATGTCGGTGGCGTAGCAGTGCGGTAGATTCGA
GCGCTTGTCGCGTGGGCGTTCCTCGCGAAGGGCAGCGTCCATGTGCTCAC
AGGTGGCGAATAGTGTCGCAAGCGAGAACGGTACTCTGCCGCCCCCCCGC
CGTCGTGGCCCTTCTTTTTCGTGTTCTGCGGCGGCGATGGCGGCGACGGT
TTATCGGGTGGGTCACGGCGTCCTCCGTCGACGGCGTCGCGAGTGGCGAG
CGACGAGACCAGGGCCGTCCTATCCATCATCGAGAGAAGTCCGAGACGGT
GTTGGAGGGCACCACTTCCAGACGGAGACGAGAGAGGGTGGTACAATTGC
GGCGGCGGTTCGCGGAGACGCTGTTGTTGGCGATGCTGCTCCTCCATGAA
TCGTACACCGTCGCCCCGTGTGCGATGGCTCGACGTTGACCACCGAGTCT
TCCCATAGCTCCGAGTGCTCCGAGCTCATCGCCTTATCAAAGTTTTTCGG
CACCTGGATGTCGGTGGCGTAGCAGTGCGGTAGATTCGAGCGCTTGTCGC
GTGGGCGTTCCTCGCGAAGGGCAGCGTCCATGTGCTCACAGGTGGCGAAT
AGTGTCGCAAGCGAGAACGGTACTCTGCCGCCCCCCCGCCGTCGTGGCCC
TTCTTTTTCGTGTTCTGCGGCGGCGATGGCGGCGACGGTTTATCGGGTGG
GTCACGGCGTCCTCCGTCGACGGCGTCGCGAGTGGCGAGCGACGAGACCA
GGGCCGTCCTATCCATCATCGAGAGAAGTCCGAGACGGTGTTGGAGGGCA
CCACTTCCAGACGGAGACGAGAGAGGGTGGTACAATTGCGGCGGCGGTTC
GCGGAGACGCTGTTGTTGGCGATGCTGCTCCTCCATGAATCGTACACCGT
CGCCCCGTGTGCGATGGCTCGACGTTGA
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