mRNA_H-paniculata_contig47773.11838.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig47773.11838.1
Unique NamemRNA_H-paniculata_contig47773.11838.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig47773.11838.1 vs. uniprot
Match: D7G3C2_ECTSI (F-box domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3C2_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 1.130e-22
Identity = 43/66 (65.15%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:    1 LNQEQLGECTHVLSGHTERVTGVARLGRDRVASSSVDGTLRVWSLETGEVLHELALPAPVYCLGAA 198
            L +EQLGEC HVL GHTER+TGVARL   R+A+SS DG+LRVW + +GE LH++ LP+P  CLGAA
Sbjct:   38 LEKEQLGECLHVLEGHTERITGVARLDGSRLATSSADGSLRVWDVSSGETLHDVLLPSPACCLGAA 103
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BLAST of mRNA_H-paniculata_contig47773.11838.1 vs. uniprot
Match: A0A6H5KY61_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY61_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 1.350e-21
Identity = 42/66 (63.64%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:    1 LNQEQLGECTHVLSGHTERVTGVARLGRDRVASSSVDGTLRVWSLETGEVLHELALPAPVYCLGAA 198
            L +EQLGEC HVL GHT+R+TGVARL   R+A+SS DG+LRVW + +GE LH++ LP+P  CLGAA
Sbjct:  261 LEKEQLGECLHVLEGHTQRITGVARLDGSRLATSSADGSLRVWDVSSGETLHDVLLPSPACCLGAA 326
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BLAST of mRNA_H-paniculata_contig47773.11838.1 vs. uniprot
Match: A0A1E4F0N6_9BACT (Non-specific serine/threonine protein kinase n=1 Tax=bacterium SCN 62-11 TaxID=1660156 RepID=A0A1E4F0N6_9BACT)

HSP 1 Score: 51.2 bits (121), Expect = 8.020e-6
Identity = 25/60 (41.67%), Postives = 36/60 (60.00%), Query Frame = 1 
Query:   19 GECTHVLSGHTERVTGVARLGRDRVASSSVDGTLRVWSLETGEVLHELALPAPVYCLGAA 198
            G C    +GHT++VT VA L ++   S+S+DGT+R+WSL +GE L       P   LG +
Sbjct:  953 GSCVRGFTGHTDQVTAVA-LSQETALSASLDGTVRLWSLASGECLEVYRFNEPALQLGVS 1011
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BLAST of mRNA_H-paniculata_contig47773.11838.1 vs. uniprot
Match: SEL10_CAEBR (F-box/WD repeat-containing protein sel-10 n=2 Tax=Caenorhabditis TaxID=6237 RepID=SEL10_CAEBR)

HSP 1 Score: 50.8 bits (120), Expect = 1.080e-5
Identity = 20/48 (41.67%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:   19 GECTHVLSGHTERVTGVARLGRDRVASSSVDGTLRVWSLETGEVLHEL 162
            G C H+LSGH   +T +   GR  VA+SS DG++++W +E G ++ +L
Sbjct:  495 GTCIHILSGHRSAITSLQWFGRGLVATSSDDGSVKLWDIERGVLIRDL 542
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BLAST of mRNA_H-paniculata_contig47773.11838.1 vs. uniprot
Match: A0A6A6CQT5_9PEZI (Uncharacterized protein n=1 Tax=Zasmidium cellare ATCC 36951 TaxID=1080233 RepID=A0A6A6CQT5_9PEZI)

HSP 1 Score: 50.1 bits (118), Expect = 1.980e-5
Identity = 29/51 (56.86%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:   25 CTHVLSGHTERVTGVA-RLGRDRVASSSVDGTLRVWSLETGEV---LHELA 165
            CT+  SGH E +TG+A R GR  V S S+DGT+RVWSLE GE+   L E+A
Sbjct:  294 CTY--SGHFEEITGLASRGGRREVVSVSIDGTVRVWSLERGEMEKYLEEVA 342
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BLAST of mRNA_H-paniculata_contig47773.11838.1 vs. uniprot
Match: A0A4U0XHL1_9PEZI (F-box domain-containing protein n=1 Tax=Friedmanniomyces simplex TaxID=329884 RepID=A0A4U0XHL1_9PEZI)

HSP 1 Score: 48.9 bits (115), Expect = 5.150e-5
Identity = 25/44 (56.82%), Postives = 30/44 (68.18%), Query Frame = 1 
Query:   19 GECTHVLSGHTERVTGVARLGRDRVASSSVDGTLRVWSLETGEV 150
            GE   V SGH E VTG+A +    V S S+DGT+R WSLETGE+
Sbjct:  442 GELVCVYSGHYEEVTGLALVRGWGVVSVSIDGTVRRWSLETGEM 485
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BLAST of mRNA_H-paniculata_contig47773.11838.1 vs. uniprot
Match: A0A317SKD4_9PEZI (WD40 repeat-like protein n=1 Tax=Tuber magnatum TaxID=42249 RepID=A0A317SKD4_9PEZI)

HSP 1 Score: 48.5 bits (114), Expect = 6.950e-5
Identity = 23/40 (57.50%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:   19 GECTHVLSGHTERVTGVARLGR-DRVASSSVDGTLRVWSL 135
            GE  H+  GH E VTG+A +G+ D VAS S+DGT+R WSL
Sbjct:  302 GELCHIYDGHIEEVTGLAIVGKGDMVASISIDGTVRKWSL 341
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BLAST of mRNA_H-paniculata_contig47773.11838.1 vs. uniprot
Match: A0A8H3BVU0_9AGAM (Hypothetical protein n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H3BVU0_9AGAM)

HSP 1 Score: 48.1 bits (113), Expect = 9.620e-5
Identity = 22/49 (44.90%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:   19 GECTHVLSGHTERVTGVAR-LGRDRVASSSVDGTLRVWSLETGEVLHEL 162
            GEC   L GH+++V  V     R++  S ++DGT+R+WSL TG+ LH L
Sbjct:  297 GECKWTLDGHSQKVYSVVLDPQRNQAMSGTMDGTVRIWSLATGQALHTL 345
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig47773.11838.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7G3C2_ECTSI1.130e-2265.15F-box domain containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KY61_9PHAE1.350e-2163.64Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A1E4F0N6_9BACT8.020e-641.67Non-specific serine/threonine protein kinase n=1 T... [more]
SEL10_CAEBR1.080e-541.67F-box/WD repeat-containing protein sel-10 n=2 Tax=... [more]
A0A6A6CQT5_9PEZI1.980e-556.86Uncharacterized protein n=1 Tax=Zasmidium cellare ... [more]
A0A4U0XHL1_9PEZI5.150e-556.82F-box domain-containing protein n=1 Tax=Friedmanni... [more]
A0A317SKD4_9PEZI6.950e-557.50WD40 repeat-like protein n=1 Tax=Tuber magnatum Ta... [more]
A0A8H3BVU0_9AGAM9.620e-544.90Hypothetical protein n=1 Tax=Rhizoctonia solani Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig47773contigH-paniculata_contig47773:1175..1372 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.7
Seed ortholog evalue4.4e-18
Seed eggNOG ortholog2880.D7G3C2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
EggNOG OGsKOG0274@1,KOG0274@2759
Ec32 ortholog descriptionWD40/YVTN repeat-like-containing domain
Ec32 orthologEc-21_002790.1
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930416.8930166-CDS-H-paniculata_contig47773:1174..13721622930416.8930166-CDS-H-paniculata_contig47773:1174..1372Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47773 1175..1372 +
1691481282.44137-CDS-H-paniculata_contig47773:1174..13721691481282.44137-CDS-H-paniculata_contig47773:1174..1372Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47773 1175..1372 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig47773.11838.1prot_H-paniculata_contig47773.11838.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig47773 1175..1372 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig47773.11838.1

>prot_H-paniculata_contig47773.11838.1 ID=prot_H-paniculata_contig47773.11838.1|Name=mRNA_H-paniculata_contig47773.11838.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
LNQEQLGECTHVLSGHTERVTGVARLGRDRVASSSVDGTLRVWSLETGEV
LHELALPAPVYCLGAA
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mRNA from alignment at H-paniculata_contig47773:1175..1372+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig47773.11838.1 ID=mRNA_H-paniculata_contig47773.11838.1|Name=mRNA_H-paniculata_contig47773.11838.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=198bp|location=Sequence derived from alignment at H-paniculata_contig47773:1175..1372+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTAAACCAGGAACAACTGGGAGAATGCACACACGTGCTCTCCGGACACAC
GGAGCGGGTGACGGGGGTTGCGAGGCTTGGTCGCGATCGAGTGGCCAGTT
CCTCTGTGGACGGCACCCTAAGAGTGTGGAGCTTGGAGACCGGCGAGGTG
CTGCACGAACTGGCGCTGCCGGCGCCGGTGTACTGCTTAGGGGCCGCT
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Coding sequence (CDS) from alignment at H-paniculata_contig47773:1175..1372+

>mRNA_H-paniculata_contig47773.11838.1 ID=mRNA_H-paniculata_contig47773.11838.1|Name=mRNA_H-paniculata_contig47773.11838.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig47773:1175..1372+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTAAACCAGGAACAACTGGGAGAATGCACACACGTGCTCTCCGGACACAC
GGAGCGGGTGACGGGGGTTGCGAGGCTTGGTCGCGATCGAGTGGCCAGTT
CCTCTGTGGACGGCACCCTAAGAGTGTGGAGCTTGGAGACCGGCGAGGTG
CTGCACGAACTGGCGCTGCCGGCGCCGGTGTACTGCTTAGGGGCCGCTTT
AAACCAGGAACAACTGGGAGAATGCACACACGTGCTCTCCGGACACACGG
AGCGGGTGACGGGGGTTGCGAGGCTTGGTCGCGATCGAGTGGCCAGTTCC
TCTGTGGACGGCACCCTAAGAGTGTGGAGCTTGGAGACCGGCGAGGTGCT
GCACGAACTGGCGCTGCCGGCGCCGGTGTACTGCTTAGGGGCCGCT
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