mRNA_H-paniculata_contig4777.11837.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4777.11837.1
Unique NamemRNA_H-paniculata_contig4777.11837.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4777.11837.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4777contigH-paniculata_contig4777:11609..12074 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size466
Cds size465
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930416.852848-CDS-H-paniculata_contig4777:11608..120731622930416.852848-CDS-H-paniculata_contig4777:11608..12073Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4777 11609..12073 +
1691481282.4290307-CDS-H-paniculata_contig4777:11608..120731691481282.4290307-CDS-H-paniculata_contig4777:11608..12073Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4777 11609..12073 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4777.11837.1prot_H-paniculata_contig4777.11837.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4777 11609..12073 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4777.11837.1

>prot_H-paniculata_contig4777.11837.1 ID=prot_H-paniculata_contig4777.11837.1|Name=mRNA_H-paniculata_contig4777.11837.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=155bp
GSGGESGSVAGNGAESGVGSVSIGTRIGIPHSGSAGGGEGAVASECGRIT
RNRGVVELGDREHGGAGARATGEENGGGDVREGDRNHGGAGGHREDDKGR
EDGNGGSGDGGSEVPINPGTGGARGDDGGVAIESGRRAVNEGGDGARGVR
NEDNG
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mRNA from alignment at H-paniculata_contig4777:11609..12074+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4777.11837.1 ID=mRNA_H-paniculata_contig4777.11837.1|Name=mRNA_H-paniculata_contig4777.11837.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=466bp|location=Sequence derived from alignment at H-paniculata_contig4777:11609..12074+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGAGCGGAGGGGAGAGCGGGAGTGTTGCCGGCAACGGCGCTGAGAGCGG
CGTCGGAAGCGTCAGCATCGGCACAAGAATTGGTATCCCTCACAGCGGAA
GCGCGGGTGGAGGTGAAGGAGCCGTCGCTAGTGAGTGCGGACGCATCACT
CGTAACAGGGGGGTTGTCGAACTTGGAGACAGGGAGCACGGGGGTGCGGG
AGCGCGTGCTACCGGAGAGGAAAATGGCGGCGGTGACGTCCGCGAAGGCG
ATAGAAACCACGGCGGAGCAGGTGGCCACAGAGAAGATGACAAAGGCAGA
GAGGACGGCAACGGCGGCAGCGGCGACGGAGGCAGCGAAGTCCCCATCAA
CCCTGGGACCGGAGGGGCACGGGGAGATGACGGTGGCGTCGCCATCGAGA
GTGGACGCCGTGCTGTAAATGAAGGAGGCGATGGAGCGAGGGGAGTGCGG
AACGAGGATAACGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig4777:11609..12074+

>mRNA_H-paniculata_contig4777.11837.1 ID=mRNA_H-paniculata_contig4777.11837.1|Name=mRNA_H-paniculata_contig4777.11837.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=930bp|location=Sequence derived from alignment at H-paniculata_contig4777:11609..12074+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGAGCGGAGGGGAGAGCGGGAGTGTTGCCGGCAACGGCGCTGAGAGCGG
CGTCGGAAGCGTCAGCATCGGCACAAGAATTGGTATCCCTCACAGCGGAA
GCGCGGGTGGAGGTGAAGGAGCCGTCGCTAGTGAGTGCGGACGCATCACT
CGTAACAGGGGGGTTGTCGAACTTGGAGACAGGGAGCACGGGGGTGCGGG
AGCGCGTGCTACCGGAGAGGAAAATGGCGGCGGTGACGTCCGCGAAGGCG
ATAGAAACCACGGCGGAGCAGGTGGCCACAGAGAAGATGACAAAGGCAGA
GAGGACGGCAACGGCGGCAGCGGCGACGGAGGCAGCGAAGTCCCCATCAA
CCCTGGGACCGGAGGGGCACGGGGAGATGACGGTGGCGTCGCCATCGAGA
GTGGACGCCGTGCTGTAAATGAAGGAGGCGATGGAGCGAGGGGAGTGCGG
AACGAGGATAACGGAGGGAGCGGAGGGGAGAGCGGGAGTGTTGCCGGCAA
CGGCGCTGAGAGCGGCGTCGGAAGCGTCAGCATCGGCACAAGAATTGGTA
TCCCTCACAGCGGAAGCGCGGGTGGAGGTGAAGGAGCCGTCGCTAGTGAG
TGCGGACGCATCACTCGTAACAGGGGGGTTGTCGAACTTGGAGACAGGGA
GCACGGGGGTGCGGGAGCGCGTGCTACCGGAGAGGAAAATGGCGGCGGTG
ACGTCCGCGAAGGCGATAGAAACCACGGCGGAGCAGGTGGCCACAGAGAA
GATGACAAAGGCAGAGAGGACGGCAACGGCGGCAGCGGCGACGGAGGCAG
CGAAGTCCCCATCAACCCTGGGACCGGAGGGGCACGGGGAGATGACGGTG
GCGTCGCCATCGAGAGTGGACGCCGTGCTGTAAATGAAGGAGGCGATGGA
GCGAGGGGAGTGCGGAACGAGGATAACGGA
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