prot_H-paniculata_contig4776.11836.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4776.11836.1
Unique Nameprot_H-paniculata_contig4776.11836.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length374
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4776.11836.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 203..228
score: 39.23
coord: 106..127
score: 36.36
coord: 5..17
score: 46.15
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 21..111
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 26..108
e-value: 5.3E-8
score: 42.6
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 26..109
score: 10.645
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 23..115
e-value: 1.1E-10
score: 42.6
IPR027370RING-type zinc-finger, LisH dimerisation motifPFAMPF13445zf-RING_UBOXcoord: 26..77
e-value: 1.4E-8
score: 34.6
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 58..67

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4776contigH-paniculata_contig4776:5517..9919 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4776.11836.1mRNA_H-paniculata_contig4776.11836.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4776 3004..11596 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4776.11836.1 ID=prot_H-paniculata_contig4776.11836.1|Name=mRNA_H-paniculata_contig4776.11836.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=374bp
MVMVPPPALTSSPKEIQAQLAGPRICPICLESFSQRPVVGGVETVGADGL
ETAEMQRCGHEFCQSCLQRWQKQTDSWNNDLSANSPPALHWHPPGSGGDG
GRQLCPICDHATPLAGDPRLGPGPRPPRRRRKFLPSFGFGGKTSCAGRGG
GGGRATKAGGGNRMHIHFDSCGAPPVPQGPGGQRWRAHTRTRGNRNGGSE
ISPTSAPPPPPPPPPPLSPSRSPLTPPPPPRSDGPEFVRAKDYFRGKRLI
GRNSGGKSGNNSWENISGLRRGGSPWRRRDRERETEFLLVSLRSQYPNLL
GHAMVNRRLSTERGVSWTQDAAAERLRMEHGEHQKGSGWMSSGTDSRSRD
GGGFSDRRSFGGGSSSTTTGGRW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR027370Znf-RING_LisH
IPR017907Znf_RING_CS