mRNA_H-paniculata_contig47733.11831.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig47733.11831.1
Unique NamemRNA_H-paniculata_contig47733.11831.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig47733.11831.1 vs. uniprot
Match: A0A7S1T3E5_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T3E5_9CHLO)

HSP 1 Score: 62.4 bits (150), Expect = 3.670e-11
Identity = 25/50 (50.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query:    1 VMFQSQQRRKLDDKAWTGVFLGYDEDSPSYRIHNPENKSVQLSRNIIFDE 150
            V     QRRKLDD+AW GVF+GY  +SP++ ++NP  +    SRN++FDE
Sbjct:   42 VHVDKSQRRKLDDRAWKGVFVGYASESPAWLVYNPVTRRAVSSRNVVFDE 91          
BLAST of mRNA_H-paniculata_contig47733.11831.1 vs. uniprot
Match: UPI0003DE8D8D (uncharacterized protein LOC102660714 n=1 Tax=Glycine max TaxID=3847 RepID=UPI0003DE8D8D)

HSP 1 Score: 58.5 bits (140), Expect = 9.090e-9
Identity = 25/53 (47.17%), Postives = 38/53 (71.70%), Query Frame = 1
Query:   16 QQRRKLDDKAWTGVFLGYDEDSPSYRIHNPENKSVQLSRNIIFDEE---DFVT 165
            ++R KLDDK+   +F+GYD  S  Y+++NP NK + +SR+++FDEE   DF T
Sbjct:  163 ERREKLDDKSERFIFIGYDSISKGYKLYNPNNKKMVISRDVVFDEEEQWDFET 215          
BLAST of mRNA_H-paniculata_contig47733.11831.1 vs. uniprot
Match: T1GX32_MEGSC (Uncharacterized protein n=1 Tax=Megaselia scalaris TaxID=36166 RepID=T1GX32_MEGSC)

HSP 1 Score: 55.8 bits (133), Expect = 9.680e-9
Identity = 25/57 (43.86%), Postives = 36/57 (63.16%), Query Frame = 1
Query:    1 VMFQSQQRRKLDDKAWTGVFLGYDEDSPSYRIHNPENKSVQLSRN---IIFDEEDFV 162
            V    ++R+KLD+KAWTG+ +G  EDS  YRI +P  K + +SRN     +  EDF+
Sbjct:    2 VQVPDEKRKKLDNKAWTGIIIGCSEDSKGYRIFDPCTKKICISRNEGVFYYKSEDFL 58          
BLAST of mRNA_H-paniculata_contig47733.11831.1 vs. uniprot
Match: UPI00073A020C (uncharacterized protein LOC107057891 n=1 Tax=Solanum tuberosum TaxID=4113 RepID=UPI00073A020C)

HSP 1 Score: 55.5 bits (132), Expect = 5.180e-8
Identity = 21/48 (43.75%), Postives = 34/48 (70.83%), Query Frame = 1
Query:   16 QQRRKLDDKAWTGVFLGYDEDSPSYRIHNPENKSVQLSRNIIFDEEDF 159
            Q+R+KLDDK    +FLG  + S +Y+++NP  K + +SR+++FDE  F
Sbjct:   31 QKRKKLDDKGEKCIFLGVSDQSKAYKLYNPNTKKILVSRDVVFDENQF 78          
BLAST of mRNA_H-paniculata_contig47733.11831.1 vs. uniprot
Match: A0A540MM95_MALBA (Integrase catalytic domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540MM95_MALBA)

HSP 1 Score: 56.6 bits (135), Expect = 7.620e-8
Identity = 21/47 (44.68%), Postives = 36/47 (76.60%), Query Frame = 1
Query:   16 QQRRKLDDKAWTGVFLGYDEDSPSYRIHNPENKSVQLSRNIIFDEED 156
            ++R KLDDK+   +F+GYD +S  Y+++NP N+ + +SR++ FDEE+
Sbjct:  116 ERRAKLDDKSEKFIFIGYDSNSKGYKLYNPNNRKMVISRDVTFDEEE 162          
BLAST of mRNA_H-paniculata_contig47733.11831.1 vs. uniprot
Match: A0A6A3BK46_HIBSY (Annexin 5 isoform 2 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3BK46_HIBSY)

HSP 1 Score: 56.6 bits (135), Expect = 7.770e-8
Identity = 20/46 (43.48%), Postives = 37/46 (80.43%), Query Frame = 1
Query:   16 QQRRKLDDKAWTGVFLGYDEDSPSYRIHNPENKSVQLSRNIIFDEE 153
            ++R KLD+K  + +F+GYD +S  Y+++NP+NK + +SR+++F+EE
Sbjct: 1137 ERRTKLDEKRESFIFIGYDANSKGYKLYNPDNKKIVISRDVVFNEE 1182          
BLAST of mRNA_H-paniculata_contig47733.11831.1 vs. uniprot
Match: A0A371E7M2_MUCPR (Uncharacterized protein (Fragment) n=1 Tax=Mucuna pruriens TaxID=157652 RepID=A0A371E7M2_MUCPR)

HSP 1 Score: 54.7 bits (130), Expect = 9.130e-8
Identity = 22/47 (46.81%), Postives = 34/47 (72.34%), Query Frame = 1
Query:   13 SQQRRKLDDKAWTGVFLGYDEDSPSYRIHNPENKSVQLSRNIIFDEE 153
            +Q R KLD+++   VF+GYD DS  Y+++NP N  + +SR++ FDEE
Sbjct:   49 NQGRSKLDNRSMKHVFIGYDTDSKGYKLYNPNNGKIIISRDVEFDEE 95          
BLAST of mRNA_H-paniculata_contig47733.11831.1 vs. uniprot
Match: A0A7S1SL50_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SL50_9CHLO)

HSP 1 Score: 56.2 bits (134), Expect = 1.040e-7
Identity = 21/46 (45.65%), Postives = 34/46 (73.91%), Query Frame = 1
Query:   16 QQRRKLDDKAWTGVFLGYDEDSPSYRIHNPENKSVQLSRNIIFDEE 153
            +QRRKL +KA+ GV +GY  D+P YR++NPE + +  S +++F E+
Sbjct:  297 KQRRKLSEKAFRGVMVGYPPDAPGYRVYNPETRRITTSVHVVFQED 342          
BLAST of mRNA_H-paniculata_contig47733.11831.1 vs. uniprot
Match: A0A6A2X2T8_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2X2T8_HIBSY)

HSP 1 Score: 56.2 bits (134), Expect = 1.040e-7
Identity = 21/46 (45.65%), Postives = 36/46 (78.26%), Query Frame = 1
Query:   16 QQRRKLDDKAWTGVFLGYDEDSPSYRIHNPENKSVQLSRNIIFDEE 153
            ++R KLDDK+ + +F+GYD +S  Y+++NP NK + +SR ++F+EE
Sbjct:   33 ERRTKLDDKSESFIFIGYDANSKIYKLYNPYNKKIMISRYVVFNEE 78          
BLAST of mRNA_H-paniculata_contig47733.11831.1 vs. uniprot
Match: UPI0009047AD4 (uncharacterized protein LOC109237395 n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=UPI0009047AD4)

HSP 1 Score: 55.5 bits (132), Expect = 1.850e-7
Identity = 22/46 (47.83%), Postives = 35/46 (76.09%), Query Frame = 1
Query:   16 QQRRKLDDKAWTGVFLGYDEDSPSYRIHNPENKSVQLSRNIIFDEE 153
            ++R KLDDK+   VF+GYD+ S  Y+++NP+N  V +SR++ FDE+
Sbjct:  182 EKRSKLDDKSERYVFIGYDQSSKGYKLYNPKNGKVTISRDVEFDED 227          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig47733.11831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1T3E5_9CHLO3.670e-1150.00Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
UPI0003DE8D8D9.090e-947.17uncharacterized protein LOC102660714 n=1 Tax=Glyci... [more]
T1GX32_MEGSC9.680e-943.86Uncharacterized protein n=1 Tax=Megaselia scalaris... [more]
UPI00073A020C5.180e-843.75uncharacterized protein LOC107057891 n=1 Tax=Solan... [more]
A0A540MM95_MALBA7.620e-844.68Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A3BK46_HIBSY7.770e-843.48Annexin 5 isoform 2 n=1 Tax=Hibiscus syriacus TaxI... [more]
A0A371E7M2_MUCPR9.130e-846.81Uncharacterized protein (Fragment) n=1 Tax=Mucuna ... [more]
A0A7S1SL50_9CHLO1.040e-745.65Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A6A2X2T8_HIBSY1.040e-745.65Uncharacterized protein n=1 Tax=Hibiscus syriacus ... [more]
UPI0009047AD41.850e-747.83uncharacterized protein LOC109237395 n=1 Tax=Nicot... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig47733contigH-paniculata_contig47733:97..276 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size180
Cds size177
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930416.1247282-UTR-H-paniculata_contig47733:96..991622930416.1247282-UTR-H-paniculata_contig47733:96..99Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig47733 97..99 +
1691481282.1063035-UTR-H-paniculata_contig47733:96..991691481282.1063035-UTR-H-paniculata_contig47733:96..99Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig47733 97..99 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930416.1358654-CDS-H-paniculata_contig47733:99..2761622930416.1358654-CDS-H-paniculata_contig47733:99..276Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47733 100..276 +
1691481282.1220856-CDS-H-paniculata_contig47733:99..2761691481282.1220856-CDS-H-paniculata_contig47733:99..276Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47733 100..276 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig47733.11831.1prot_H-paniculata_contig47733.11831.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig47733 100..276 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig47733.11831.1

>prot_H-paniculata_contig47733.11831.1 ID=prot_H-paniculata_contig47733.11831.1|Name=mRNA_H-paniculata_contig47733.11831.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=59bp
MFQSQQRRKLDDKAWTGVFLGYDEDSPSYRIHNPENKSVQLSRNIIFDEE
DFVTDHRG*
back to top

mRNA from alignment at H-paniculata_contig47733:97..276+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig47733.11831.1 ID=mRNA_H-paniculata_contig47733.11831.1|Name=mRNA_H-paniculata_contig47733.11831.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=180bp|location=Sequence derived from alignment at H-paniculata_contig47733:97..276+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTATGTTCCAGTCGCAGCAGAGACGCAAGCTCGACGACAAAGCATGGAC GGGGGTGTTTCTGGGGTACGACGAGGACAGCCCGAGTTATCGCATACATA ACCCGGAAAACAAGAGCGTCCAGCTCAGCAGGAACATAATATTTGACGAA GAGGACTTCGTAACGGATCATCGCGGATAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig47733:97..276+

>mRNA_H-paniculata_contig47733.11831.1 ID=mRNA_H-paniculata_contig47733.11831.1|Name=mRNA_H-paniculata_contig47733.11831.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at H-paniculata_contig47733:97..276+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCCAGTCGCAGCAGAGACGCAAGCTCGACGACAAAGCATGGACGGG
GGTGTTTCTGGGGTACGACGAGGACAGCCCGAGTTATCGCATACATAACC
CGGAAAACAAGAGCGTCCAGCTCAGCAGGAACATAATATTTGACGAAGAG
GACTTCGTAACGGATCATCGCGGATAGATGTTCCAGTCGCAGCAGAGACG
CAAGCTCGACGACAAAGCATGGACGGGGGTGTTTCTGGGGTACGACGAGG
ACAGCCCGAGTTATCGCATACATAACCCGGAAAACAAGAGCGTCCAGCTC
AGCAGGAACATAATATTTGACGAAGAGGACTTCGTAACGGATCATCGCGG
ATAG
back to top