mRNA_H-paniculata_contig477.11826.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig477.11826.1
Unique NamemRNA_H-paniculata_contig477.11826.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig477.11826.1 vs. uniprot
Match: D7G848_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G848_ECTSI)

HSP 1 Score: 246 bits (628), Expect = 7.400e-65
Identity = 125/168 (74.40%), Postives = 143/168 (85.12%), Query Frame = 3 
Query:    3 SLDGLRQLGSDDKVVIFSQFTSFLDVMQPLLVAEGYRIARIDGTMKNKQRQAAIKAFCGKEPGTSAQVMLASLTAAGTGINLTSANHCFICDPWWNASVEEQAMDRVHRIGQTKPVRVVRLVCTNSVENRILEIQEKKQTLGKGALRKLSADELRKTRMADLRSIFEC 506
            SL  LR+ G+ DK V+FSQFTSFLDV+QP L+A+G+R+AR+DG+M NKQRQA +K F GK  G  A+VMLASL AAGTGINLTSANHCFI DPWWNASVE QAMDRVHRIGQTKPVRVVR+V  +SVE+RILEIQE K+ LGKGALRKL  DE+RK RM DLR+IFEC
Sbjct:  847 SLHELRRSGNGDKAVVFSQFTSFLDVIQPFLLADGFRLARLDGSMTNKQRQAELKRFAGKG-GDGAEVMLASLMAAGTGINLTSANHCFIADPWWNASVESQAMDRVHRIGQTKPVRVVRMVSADSVEDRILEIQEAKEALGKGALRKLKPDEVRKARMTDLRTIFEC 1013
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BLAST of mRNA_H-paniculata_contig477.11826.1 vs. uniprot
Match: A0A6H5L102_9PHAE (Helicase C-terminal domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L102_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 3.610e-46
Identity = 91/122 (74.59%), Postives = 105/122 (86.07%), Query Frame = 3 
Query:   84 QPLLVAEGYRIARIDGTMKNKQRQAAIKAFCGKEPGTSAQVMLASLTAAGTGINLTSANHCFICDPWWNASVEEQAMDRVHRIGQTKPVRVVRLVCTNSVENRILEIQEKKQTLGKGALRKL 449
            +P L+A+G+R+AR+DG+M NKQRQA +K F  K  G  A+VMLASL AAGTGINLTSANHCFI DPWWNASVE QAMDRVHRIGQTKPVRVVR+V  +SVE+RILEIQE K+ LGKGALRK+
Sbjct:  195 KPFLLADGFRLARLDGSMTNKQRQAELKRFAVKG-GDGAEVMLASLMAAGTGINLTSANHCFIADPWWNASVESQAMDRVHRIGQTKPVRVVRMVSADSVEDRILEIQEAKEALGKGALRKV 315
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BLAST of mRNA_H-paniculata_contig477.11826.1 vs. uniprot
Match: A0A7S1CWT5_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CWT5_CYCTE)

HSP 1 Score: 163 bits (413), Expect = 9.140e-42
Identity = 84/163 (51.53%), Postives = 117/163 (71.78%), Query Frame = 3 
Query:   15 LRQLGSDDKVVIFSQFTSFLDVMQPLLVAEGYRIARIDGTMKNKQRQAAIKAFCGKEPGTSAQVMLASLTAAGTGINLTSANHCFICDPWWNASVEEQAMDRVHRIGQTKPVRVVRLVCTNSVENRILEIQEKKQTLGKGALRKLSADELRKTRMADLRSIFE 503
            + ++  ++K VIFSQFT FLDV++ +L   GY  ARIDG+ +  QR   ++ F  ++ G   + ML SL AAGTGINLT ANH F+ D WWN++VE QAMDRVHRIGQ + VRVVR V  +S+E R++EIQE K  +GKG + KL+ +ELR+ R+++LR +F+
Sbjct:   90 IEEMRDEEKAVIFSQFTKFLDVIEQMLDRLGYTFARIDGSRRAVQRIECLREFS-RDDGP--RFMLCSLHAAGTGINLTRANHIFMMDVWWNSAVESQAMDRVHRIGQKRDVRVVRFVMCDSIEERMIEIQEAKAAIGKGVMEKLTPEELRRVRISNLRMLFQ 249
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BLAST of mRNA_H-paniculata_contig477.11826.1 vs. uniprot
Match: A0A7S1VWT8_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1VWT8_9STRA)

HSP 1 Score: 160 bits (404), Expect = 6.230e-39
Identity = 83/166 (50.00%), Postives = 115/166 (69.28%), Query Frame = 3 
Query:    6 LDGLRQLGSDDKVVIFSQFTSFLDVMQPLLVAEGYRIARIDGTMKNKQRQAAIKAFCGKEPGTSAQVMLASLTAAGTGINLTSANHCFICDPWWNASVEEQAMDRVHRIGQTKPVRVVRLVCTNSVENRILEIQEKKQTLGKGALRKLSADELRKTRMADLRSIFE 503
            L  ++++   +K VIFSQFTSFLD++   L   G    RIDG+M+   R  A+K F     G S Q +L SL AAGTGINLT  NH F+ D WWN +VE+QAMDRVHRIGQT+ VR+V+ V  NS+E R++++Q+ K  LGKG++ KLS +E+R+ R++ LR +F+
Sbjct:  229 LKSIQEMKIGEKGVIFSQFTSFLDIIGKALADVGLSFTRIDGSMRAPDRIEAMKQFNSDAFG-SPQFILCSLLAAGTGINLTRGNHTFLMDLWWNKAVEDQAMDRVHRIGQTRDVRIVKFVMDNSIEERVIKMQDAKAALGKGSMEKLSPEEMRQARISALRDLFQ 393
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BLAST of mRNA_H-paniculata_contig477.11826.1 vs. uniprot
Match: A0A7S1D0D4_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D0D4_CYCTE)

HSP 1 Score: 157 bits (396), Expect = 2.780e-38
Identity = 83/170 (48.82%), Postives = 111/170 (65.29%), Query Frame = 3 
Query:    6 LDGLRQLGSDDKVVIFSQFTSFLDVMQPLLVAEGYRIARIDGTMKNKQRQAAIKAFCGKEPGT----SAQVMLASLTAAGTGINLTSANHCFICDPWWNASVEEQAMDRVHRIGQTKPVRVVRLVCTNSVENRILEIQEKKQTLGKGALRKLSADELRKTRMADLRSIFE 503
            L  + ++   +K VIFSQF  FL  ++ LL   GY   RIDG+   KQR  +++ F  ++         + ML SL A GTGINLT ANH ++ D WWN++VE QAMDRVHRIGQ + VRVVR V T+S+E R++EIQ  K  +GKG + KLS  ELRK R+ DL+S+F+
Sbjct:  181 LAAISEMKDGEKGVIFSQFPKFLHEIEKLLDERGYTSTRIDGSRSAKQRIDSLRCFSSEDXXXXXXXGPRFMLCSLRAGGTGINLTRANHIYMMDTWWNSAVENQAMDRVHRIGQKRDVRVVRFVMTDSIEERMIEIQGAKAAIGKGTMEKLSPQELRKARIGDLKSLFQ 350
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BLAST of mRNA_H-paniculata_contig477.11826.1 vs. uniprot
Match: A0A7S0G7I8_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0G7I8_9STRA)

HSP 1 Score: 158 bits (399), Expect = 3.050e-38
Identity = 79/165 (47.88%), Postives = 114/165 (69.09%), Query Frame = 3 
Query:    6 LDGLRQLGSDDKVVIFSQFTSFLDVMQPLLVAEGYRIARIDGTMKNKQRQAAIKAFCGKEPGTSAQVMLASLTAAGTGINLTSANHCFICDPWWNASVEEQAMDRVHRIGQTKPVRVVRLVCTNSVENRILEIQEKKQTLGKGALRKLSADELRKTRMADLRSIF 500
            L+ ++ +  D+K VIFSQFTSFL+++   +   G+   RIDG+M    R  AI+AFC  +   S + +L SL AAGTGINLT  NH F+ D WWN ++E QAMDR+HRIGQT+ VRV+R V  N++E R++ +QE+K   GK ++ KL+ DE R+TRM++L+ + 
Sbjct:  234 LEAMKDMPIDEKGVIFSQFTSFLNLIGAAIEQAGHLFTRIDGSMATSCRTEAIRAFCSNDD-DSPRFILCSLHAAGTGINLTRGNHAFMMDCWWNVAIENQAMDRIHRIGQTRKVRVIRFVMKNTIEERMVILQEQKSLQGKASVEKLNPDEQRRTRMSNLQGLL 397
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BLAST of mRNA_H-paniculata_contig477.11826.1 vs. uniprot
Match: A0A3S3MA75_9MAGN (Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like protein 1 n=2 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S3MA75_9MAGN)

HSP 1 Score: 150 bits (380), Expect = 2.560e-37
Identity = 84/161 (52.17%), Postives = 110/161 (68.32%), Query Frame = 3 
Query:   18 RQLGSDDKVVIFSQFTSFLDVMQPLLVAEGYRIARIDGTMKNKQRQAAIKAFCGKEPGTSAQVMLASLTAAGTGINLTSANHCFICDPWWNASVEEQAMDRVHRIGQTKPVRVVRLVCTNSVENRILEIQEKKQTLGKGALRKLSADELRKTRMADLRSIF 500
            R+     K VIFSQF   L +++  L A G+ + R+DG+M  K+R   IK F    PG S  V+LASL AAG GINLT+A+  ++ +PWWN  VE+QAMDRVHRIGQTK V+VVRL+  NS+E RILE+QEKK+ + +GA  K    ELR+TRM DL ++ 
Sbjct:   93 REESPSTKSVIFSQFRKMLILLEEPLRAAGFGVLRLDGSMTTKKRSEVIKEFGNCGPG-SPTVLLASLKAAGAGINLTAASRVYLLEPWWNPGVEDQAMDRVHRIGQTKEVKVVRLIMRNSIEERILELQEKKKDVLRGAFGKQDK-ELRQTRMEDLLALM 251
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BLAST of mRNA_H-paniculata_contig477.11826.1 vs. uniprot
Match: A0A7S0U4C2_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0U4C2_HEMAN)

HSP 1 Score: 150 bits (379), Expect = 6.320e-37
Identity = 85/168 (50.60%), Postives = 110/168 (65.48%), Query Frame = 3 
Query:    6 LDGLRQLGSDD---KVVIFSQFTSFLDVMQPLLVAEGYRIARIDGTMKNKQRQAAIKAFCGKEPGTSAQVMLASLTAAGTGINLTSANHCFICDPWWNASVEEQAMDRVHRIGQTKPVRVVRLVCTNSVENRILEIQEKKQTLGKGALRKLSADELRKTRMADLRSIF 500
            L  LR     D   K V+FSQFT  LD+ Q  L  EG    R++G M  +QR   I+ F   E G S  VML SL A G GINL  AN  ++ D WWNA+VE+QA DRV RIGQT+ VRVVR +  +S+E R+L+IQE K+ LG+GAL  +SA+E R++R+ADLR++F
Sbjct:  109 LQSLRAAWQQDVGQKAVVFSQFTKMLDITQSSLAEEGIEGVRLEGKMSLQQRARVIEEFSRAEGGPS--VMLVSLKAGGQGINLARANLVYMMDLWWNAAVEDQAQDRVWRIGQTRNVRVVRYLAEDSIEERLLQIQEDKRALGRGALSAVSAEEARRSRVADLRTLF 274
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BLAST of mRNA_H-paniculata_contig477.11826.1 vs. uniprot
Match: A0A448Z3P8_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z3P8_9STRA)

HSP 1 Score: 157 bits (396), Expect = 4.280e-36
Identity = 81/156 (51.92%), Postives = 109/156 (69.87%), Query Frame = 3 
Query:   33 DDKVVIFSQFTSFLDVMQPLLVAEGYRIARIDGTMKNKQRQAAIKAFCGKEPGTSAQVMLASLTAAGTGINLTSANHCFICDPWWNASVEEQAMDRVHRIGQTKPVRVVRLVCTNSVENRILEIQEKKQTLGKGALRKLSADELRKTRMADLRSIF 500
            D+K VIFSQFTSFLD++   L  EG+   R+DG+M   +R AA++AF   E     + +L SL AAGTGINLT  +  F+ D WWNASVE QAMDR+HRIGQT+PV + RLV  +S+E RI+E+Q  K    KG+++KL A+E +KTR+ DL+ + 
Sbjct:  535 DEKGVIFSQFTSFLDLISQALQEEGHTFVRMDGSMNTTKRMAAVRAFSSDEK-DGPRFILCSLHAAGTGINLTRGSKAFMMDCWWNASVENQAMDRIHRIGQTRPVTIYRLVMKDSLEERIVELQTVKSLQAKGSMQKLGAEEKKKTRLRDLKGLL 689
[Close]
BLAST of mRNA_H-paniculata_contig477.11826.1 vs. uniprot
Match: A0A812QC39_SYMPI (RAD5A protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812QC39_SYMPI)

HSP 1 Score: 147 bits (370), Expect = 5.630e-36
Identity = 77/162 (47.53%), Postives = 110/162 (67.90%), Query Frame = 3 
Query:   18 RQLGSDDKVVIFSQFTSFLDVMQPLLVAEGYRIARIDGTMKNKQRQAAIKAFCGKEPGTSAQVMLASLTAAGTGINLTSANHCFICDPWWNASVEEQAMDRVHRIGQTKPVRVVRLVCTNSVENRILEIQEKKQTLGKGALRKLSADELRKTRMADLRSIFE 503
              L    K V+FSQFTS L+++Q  L        R+DG+MK++QR  A ++F G       QVML SL AAGTG+NLT+A+   + DPWWN +VE+QA+DR+HR+GQ +PVR +R V   +VE RIL++Q++K+ + +GAL K S DE++K R+  + SIFE
Sbjct:   93 EHLQKPHKAVVFSQFTSVLNLVQTELSRRNLPFVRLDGSMKHEQRVQAQQSFAGHGH---IQVMLCSLKAAGTGLNLTAADFVLLIDPWWNPAVEDQAIDRLHRLGQRRPVRALRFVAERTVEERILDVQKQKRAIVEGALSKKSRDEIQKIRLEMMASIFE 251
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig477.11826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G848_ECTSI7.400e-6574.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L102_9PHAE3.610e-4674.59Helicase C-terminal domain-containing protein (Fra... [more]
A0A7S1CWT5_CYCTE9.140e-4251.53Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S1VWT8_9STRA6.230e-3950.00Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S1D0D4_CYCTE2.780e-3848.82Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S0G7I8_9STRA3.050e-3847.88Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A3S3MA75_9MAGN2.560e-3752.17Putative SWI/SNF-related matrix-associated actin-d... [more]
A0A7S0U4C2_HEMAN6.320e-3750.60Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A448Z3P8_9STRA4.280e-3651.92Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A812QC39_SYMPI5.630e-3647.53RAD5A protein n=1 Tax=Symbiodinium pilosum TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig477contigH-paniculata_contig477:31243..36444 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score213.4
Seed ortholog evalue7e-53
Seed eggNOG ortholog2880.D7G848
Preferred nameHLTF
KEGG koko:K15711
Hectar predicted targeting categoryother localisation
GOsGO:0000976,GO:0000977,GO:0000978,GO:0000981,GO:0000982,GO:0000987,GO:0001012,GO:0001067,GO:0001077,GO:0001228,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006464,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016070,GO:0016462,GO:0016567,GO:0016740,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019787,GO:0019899,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031625,GO:0031974,GO:0031981,GO:0032446,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043565,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0061630,GO:0061659,GO:0065007,GO:0070013,GO:0070647,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140096,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141
EggNOG free text desc.helicase activity
EggNOG OGsCOG0553@1,KOG1001@2759
EC2.3.2.27
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400,ko04121
Exons5
Model size2660
Cds size429
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930415.4600422-UTR-H-paniculata_contig477:31242..333931622930415.4600422-UTR-H-paniculata_contig477:31242..33393Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig477 31243..33393 -
1691481281.7316399-UTR-H-paniculata_contig477:31242..333931691481281.7316399-UTR-H-paniculata_contig477:31242..33393Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig477 31243..33393 -
1622930415.5965502-UTR-H-paniculata_contig477:36364..364441622930415.5965502-UTR-H-paniculata_contig477:36364..36444Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig477 36365..36444 -
1691481281.794657-UTR-H-paniculata_contig477:36364..364441691481281.794657-UTR-H-paniculata_contig477:36364..36444Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig477 36365..36444 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930415.4802012-CDS-H-paniculata_contig477:33393..334561622930415.4802012-CDS-H-paniculata_contig477:33393..33456Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig477 33394..33456 -
1691481281.7470102-CDS-H-paniculata_contig477:33393..334561691481281.7470102-CDS-H-paniculata_contig477:33393..33456Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig477 33394..33456 -
1622930415.5036685-CDS-H-paniculata_contig477:33853..340201622930415.5036685-CDS-H-paniculata_contig477:33853..34020Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig477 33854..34020 -
1691481281.7547638-CDS-H-paniculata_contig477:33853..340201691481281.7547638-CDS-H-paniculata_contig477:33853..34020Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig477 33854..34020 -
1622930415.5271833-CDS-H-paniculata_contig477:34396..344721622930415.5271833-CDS-H-paniculata_contig477:34396..34472Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig477 34397..34472 -
1691481281.7629883-CDS-H-paniculata_contig477:34396..344721691481281.7629883-CDS-H-paniculata_contig477:34396..34472Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig477 34397..34472 -
1622930415.551461-CDS-H-paniculata_contig477:35465..355821622930415.551461-CDS-H-paniculata_contig477:35465..35582Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig477 35466..35582 -
1691481281.7745326-CDS-H-paniculata_contig477:35465..355821691481281.7745326-CDS-H-paniculata_contig477:35465..35582Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig477 35466..35582 -
1622930415.5826583-CDS-H-paniculata_contig477:36358..363641622930415.5826583-CDS-H-paniculata_contig477:36358..36364Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig477 36359..36364 -
1691481281.7844443-CDS-H-paniculata_contig477:36358..363641691481281.7844443-CDS-H-paniculata_contig477:36358..36364Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig477 36359..36364 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig477.11826.1prot_H-paniculata_contig477.11826.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig477 33394..36364 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig477.11826.1

>prot_H-paniculata_contig477.11826.1 ID=prot_H-paniculata_contig477.11826.1|Name=mRNA_H-paniculata_contig477.11826.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=143bp
MQPLLVAEGYRIARIDGTMKNKQRQAAIKAFCGKEPGTSAQVMLASLTAA
GTGINLTSANHCFICDPWWNASVEEQAMDRVHRIGQTKPVRVVRLVCTNS
VENRILEIQEKKQTLGKGALRKLSADELRKTRMADLRSIFEC*
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mRNA from alignment at H-paniculata_contig477:31243..36444-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig477.11826.1 ID=mRNA_H-paniculata_contig477.11826.1|Name=mRNA_H-paniculata_contig477.11826.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5202bp|location=Sequence derived from alignment at H-paniculata_contig477:31243..36444- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAGCCTTGACGGCCTGCGGCAGTTGGGCTCCGATGACAAGGTGGTGATA
TTTTCCCAATTCACGTCCTTCCTGGACGTCATGCAGGTACCTACGTATCC
CTTTCAGAGGCGGACAAAGTATCTCTTGATGACGTCATTGTGAAAAAAAG
GTCTTGGTGATGATATTGGGGTCTTTTGGGAGGTTTTTTATTCCTAGGAG
ATGATGGAAAAACCTCAACTAAAGCTTTGTTATCCCCCGGATACGCTAGG
GGGGGGGGGGGGGTTGCATGCGCAATTCGGTACTGGCCGGTGTACAGTTA
ATCGGGTCACACCGGTTTCCCTACTCGTCGACAAATCGTACTCCGTAGAT
AGGTACCCGCTCACCTGCGATCAGTGAAATGGTTTATGTGTTGATGTCCC
CGATAGACACGTACGAATGACAATCTTCCTTCTAAAGGATATCTCCCACA
TATAACAAACATGCGTTTCCTTGATTTTTTTGTGTAAGGAAGGACACCTA
CTTCCTGCCTCCTCAAAATTGATTAGCTGTGGGAATTTAGTCACTGAGAA
TACGTCAGTTGTTGGCATTTTCTGTATTTGTACTTGCCCATGTTTTTGAT
CCGGTGCTGTTCATCAGGTTATTGTTGCCGATGCTCTCCTGTTGGTAAAG
TTGTCCTCCGCAAGAGGCGTACGTGTTGTTGTGACTGTTATGGTGTTGTC
CATTTGTAGAGCTCTTGCTCCTGCTTGAAGTTGTGCTCCTTCCCACCCCC
CGCCCCCGCCCCCCCTTCCGTTTTCCCGCCGTCCTCCTGTCGCACACCTA
CCGGTGCTTATTCATCCCTTATTTTTTCTTTAATTACTACAACCATTGTC
GTTAACTCACAGCCCTTACTGGTCGCGGAGGGCTACCGGATAGCCCGCAT
AGACGGGACGATGAAGAACAAGCAACGCCAGGCCGCGATCAAGGCATTTT
GCGGCAAGGAGCCCGGGACTAGTGCGCAGGTAAAGAGAAGAAGGCGCGCT
ATCTCCCAGGGGGGCGGGGACGGTACAAATTATCAACAAATTATGTCAAC
AAGGAGAACAGCACAGTGTCCATCGGGTCTCAGAAATTTCGACCGACCAC
GCGATCTATACTCGCGGCTGCCTGAATTTCACCTGGTTAAGCACACCGTG
TCACTACCTAGATGTGTGCCGTGTACTATGGTGGTCATGCCGCGTGCTCG
ATAGAGCGTGTGAATATTTCAATGTTCCGCCCAACATCACGAACATGCTG
ACGATTTTGTGGTGATGCTGGCTCGGCTATATACCATACACCATAAACCA
TGCCATATGGAGAACGTTTTGATTCGGCGGGTGCGGACGGGCGGGCAGAG
GGAGCAGCGGAGAGGCTGTGCGCGAGAAACGCTGCTGCCGTAAACCGAAA
AGCGTTGCCTTCGGAGAAATTTTGTCTGTCAAGACGTATGTGGGAATAAA
TACGAGCTCTTACAGTAGAACGTGAGAAGGCGTATTTCTCATTGAGAACG
TTGTGTTTTTTTACCATCACACAGGAAGTAAATTATTTTTTTATCTTCTT
GTGGTGTCACGTGGAACGTTGTCGTCGGCCTGTATGTTCATGTAGATGTA
TCTCCCCCCGGTTGTGTCCAACGACCAGTTTCGACTGCGTAGAGGGAGAG
AGGGGAGGAGGTTATTTTCTATCTGTGTCTGTCGACGGTAACAATCAGGG
TGCTCTTTTTCATTTGATTTTTTTTTTAAAGCATACATATATCAACCATG
GAGTGGTTCCTCCGCTCCTTTTTGCTCAAGCGATACATCAATAATCAAGG
ATCCGTCCAACCCGAATGTTCTGCTTACAAACTGAATTGAAGCGTCTGTC
TTTATAAACTGTTATATTTTCTTCTCGGTCTGCAAGCATCAATTAGTAAC
TAATCTCTCTACTGTTGTACTATGCGAACCTTGTTATTTGCCGCGCTTCC
ACCCTGTTTACCGAACGCACAGGTGATGCTCGCCAGCTTGACGGCTGCCG
GCACGGGCATCAACCTCACCTCCGCCAACCATTGCTTTATCTGCGACCGT
AAGTTCAAGCTCTGTCATATTATATATGCACGCGGTCTATGTAGAGCTCT
ACATACTTATACATGTACATCACCATGCCATACCACCAATTTAGCATCCA
GTAAAATATTTGTATAGCCATTAGATACACGGTACATAGAGTCTGCCGAA
ACACCCACACAAGTACCTTGCTTTATGGAAATGGAGAAAAAAGTATATGG
AGCTACTACCTACGTATAACTGTATGTGCAGCGCAATTTTTCGCTCGTTT
GGGCCAGCGCCAATTCAGACAGTGAACATTTCGAAGACATAAAGATTCGA
TCAACCCTATATCCGGCAACACCCCCAACGCCGCCACTTCCGTTTCCCCT
CGACCGCGGGCCTGAACGAATTAGCGTGGTGGAACGCTAGCGTGGAGGAG
CAGGCTATGGACCGCGTGCACCGGATCGGGCAGACCAAGCCGGTTCGAGT
GGTTCGCCTGGTGTGCACCAACAGCGTGGAGAACCGGATCCTGGAGATAC
AGGAGAAGAAGCAGACCCTGGGGAAGGGCGCTCTCAGAAAGGTGGAAGTA
TATATGGTAACGTTTTTATGCCTGAATACATGCCGCCTGTATGCTGATTC
TTTGGTGTAGCACATGGTCTCATTACTCAGTACAGCGACGATGATGATGG
TGATGATAATGATCATGCCGTTCCTCTCTGAACAGTTGTCTGTCGGTATT
GCTGGGGAAGCTGTCCTTGGTAATTGGCAGGTACAGCGTTGCCTTTATGT
TGTAGCTATACCCCCACCCGCCCACCTCTGCCGGCCCCTCCTTCCCTATC
CTGGACGCTATTTTCCCATCAAAACTTTCTGATCCTTTTACATCGTGTGC
TATTCGACGTTACGCGGCCTGCTGATGGACGGTGGCGCGTGCTGCTTATT
GCATCATGACCATGTGGTGGTGCGATACTTCTGTACAGCTCTCCGCTGAC
GAGTTGCGCAAGACTCGCATGGCCGACCTCCGTTCCATCTTTGAGTGCTG
AGTGCGGAGTGCTGATGAATTGGAAGAAACGAGAACACGATGAAGGAGGA
ACATAAGAAAAATGGACGAACAGGATCAAAAGCCCAACACGGGCATGGTC
CCCTTTGTCTGTGTCCGAGAGCGGGTTCTCCATGTATATCCCCTTCTTGC
TGCTTCAGAGCGAGAAAAACGACGGAATTTGTGACCCACAAATGAATCTG
CTTTGGACAAGTCATTTCGGCATTGCCCAGGAAGAAAGAGATGTTCACAT
GTGCACCGACAGTGCAAAGTCGACTGTGTCTCCTATGCACTTTGCTCTTA
TTTTGTTCTGTGTTGTTTTTGTTTCCTTTCCTCCCACCTTGGGCGTCAAA
GAGGCGTATCCGACGAGCTATCGTCCGACTAGAGTCTTGCCGAAGCAAGA
AAGGAAGGTCCATCGAAGAAGTAGAGTAGAGCAAACTATGCTTTTTCCCT
CTGGCTGCTTTTAACGATGTAGGAGCGAATACTGCAAGGGATCGCAAGAT
TACACTCCCTCCTTATTGGCCATTCTCCATCCATCCACTCACGGCAAGGT
GTGCGATGAGGCTGATTCCTTTGCAAGCTGTCGGCTTGTGTCCCTGTGTG
AGTTTATGCGGTTCTTACACTTTGTTGCTTCTCTGTTGTTTTGGACAAAG
CAACAATGTATGCCTACTACCAGTATTGTTTTCCGCCCCCCCCCCCAAGC
CGCCGAAAAGTATAGGAAGCTGAATTATGTTGCTTGTTTTGCCTGAGTAT
GCGTGGGTGGGTGTAACGTTGGTTACTCTCTTTAGGTCTCAGTCTTCGAG
GCGCAGGCCGGAAGGGTGATCGATAGAAAAATCCCAGGTTGAAGAATGCT
CTCCAGTAGCTGGGAGCTGCACATACATTTTGGTGTACGTGCTATTGGAA
TGGCGCATATGTGCATGTGCGGCAAAGTATTGCGGAAAAAAATTACCTGC
GTTCTCTCTCTCCAAATCACGTCGTGCTGCGTGCAGTCCAGTGCAATGTG
GTGAGAGGCCGAGACCACCCTGCTGTTGTATTGTGTGACGTTGGTGTGCA
TGTTTCCTCCCTTGGTACTCGTTACGCGTCATAACATGCAAAATGGTTCT
ATACCAACCCCGCAGAGGAACAAATAACTCTGTTCTGTAAAAGGAAATGT
AGACGTACTTCGGTATGGAAGCATCGGATAGAGGTTTTTGGCTTAGCCTT
CCGGGGGTTGAAAAAAAAAAATGGCTCTGTATCAATCATCAATCTCATCA
CCCTGTATTTTAGATGTGGCACCGGAGGCACCGATATATTATATAGTATA
CTCCGGAGTATTCATCTATATATTACTGTATGTGCTCGTTGTATTTGAAA
CGCAATCAATCATCATCAAGCTTGTATTTGTTTTGTCCATTGTTTGGAAT
AAACAATAGGCATGTTGTTGTAATAATTAATGGAGACGGATGTTACTTGA
TTTTGTTGTCATGTTTTCAACCGTAGTAATCTGTTGTATGGTTGGGGGCT
TCGAGAGCTTTTAACTGGTCGAGGAAGGCATGGCACGGCAAGGAGGGGCG
ATTGTGGAGATTGAATGATGAGCCGATGGACTTTGTGTGTGCTCATTGGC
TAGGGTAATTTCTTTCTTGAATGTGATTGGTTATTGTTCTCTGTGTGGTT
TTCGTACTATCTCTATTACCCCCTGTTGTACAGCCGCTGTTCGTTTTGTT
AGAGAGCTTCATTTTGTAGATGAAGCCTACCCTATACTGATGGGAGTGCT
GATAACGTGTGACCCAGCTCGCGTACATGGTACATATATTGGTGAAATTT
CGGGTAAAAGTGGTCCCATTAATAAGGAAATGCAGACACTCAGAAATCTT
CCGAAGAGTGGAAGTAGTGGAAAGGGTTTTTTTCCTGACCTTCCGGGGGT
TAAAAAAAAAAAAAAAAGTGGTGCTACTGTAGCATTGCTATTTTTCTTCG
CCTGGGTAGATAAACGCATAGGATTTGTGTTTTGGTAGGTGTCTACAAGT
AGTGTATCGGGGGTACAGTACAGTCTGGGCTGACCGAAAGGCTGAACATG
TAGTTGATCGTGAACACTGCGCGCAATTTTGCGAATTTTGATCTGAATTT
TTTACTGTGCCTCCTCAAGACCAAAACGGAGGGCGCCAAAGCAAACCATT
TC
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Coding sequence (CDS) from alignment at H-paniculata_contig477:31243..36444-

>mRNA_H-paniculata_contig477.11826.1 ID=mRNA_H-paniculata_contig477.11826.1|Name=mRNA_H-paniculata_contig477.11826.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=858bp|location=Sequence derived from alignment at H-paniculata_contig477:31243..36444- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGATGCAGCCCTTACTGGTCGCGGAGGGCTACCGGATAGCCCGCAT
AGACGGGACGATGAAGAACAAGCAACGCCAGGCCGCGATCAAGGCATTTT
GCGGCAAGGAGCCCGGGACTAGTGCGCAGCCCTTACTGGTCGCGGAGGGC
TACCGGATAGCCCGCATAGACGGGACGATGAAGAACAAGCAACGCCAGGC
CGCGATCAAGGCATTTTGCGGCAAGGAGCCCGGGACTAGTGCGCAGGTGA
TGCTCGCCAGCTTGACGGCTGCCGGCACGGGCATCAACCTCACCTCCGCC
AACCATTGCTTTATCTGCGACCGTGATGCTCGCCAGCTTGACGGCTGCCG
GCACGGGCATCAACCTCACCTCCGCCAACCATTGCTTTATCTGCGACCCG
TGGTGGAACGCTAGCGTGGAGGAGCAGGCTATGGACCGCGTGCACCGGAT
CGGGCAGACCAAGCCGGTTCGAGTGGTTCGCCTGGTGTGCACCAACAGCG
TGGAGAACCGGATCCTGGAGATACAGGAGAAGAAGCAGACCCTGGGGAAG
GGCGCTCTCAGAAAGCGTGGTGGAACGCTAGCGTGGAGGAGCAGGCTATG
GACCGCGTGCACCGGATCGGGCAGACCAAGCCGGTTCGAGTGGTTCGCCT
GGTGTGCACCAACAGCGTGGAGAACCGGATCCTGGAGATACAGGAGAAGA
AGCAGACCCTGGGGAAGGGCGCTCTCAGAAAGCTCTCCGCTGACGAGTTG
CGCAAGACTCGCATGGCCGACCTCCGTTCCATCTTTGAGTGCTGACTCTC
CGCTGACGAGTTGCGCAAGACTCGCATGGCCGACCTCCGTTCCATCTTTG
AGTGCTGA
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