mRNA_H-paniculata_contig477.11824.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig477.11824.1 vs. uniprot
Match: A0A6H5L254_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L254_9PHAE) HSP 1 Score: 666 bits (1719), Expect = 3.600e-223 Identity = 432/855 (50.53%), Postives = 531/855 (62.11%), Query Frame = 3
Query: 60 MDENFNPNRAVDGSTAVIMDCAFADAKADCLDDSAAVADVEASLIAILGGMGDGDVAVAGDVVAVRAGPATYHPLKAIKGMASESDVILLSCLAKAPAAGHAAEVVRSVLQRVLVRKPSATSTNTAGPTRGGSAAAAASVGPMPHLRSICPSAHTALVDARLLCAFPVSRARIILAGLSPSPAEMPE--LPTVVAGIVGDASSRCFLGQRASSAGFSAFSLRRHEVEPDA-----TLRIEALITDCGPGTHASARALYDLREEMSDGDVLGGCMRDGGDSGPFARLATEWAYSSDTTRTLGSQPPAACSSLLLVGGTCPRSAANAALRDDIEILANALAQNFTTVRLPRSEGMKGHFG-----SIEDSGVLHGVRDDIAGKEHERMQQWEADLEALLSGSENLAELAARAAFRRGDGENDNSSEDGVKSRGSDEDTTGEQTQNITFEMRTDEGG-----------DLGRRFRGDLDFSELLWELAARAFSAEGVRSALSRAFHAVGEGHIFPVIRRENLTAVGRHIREGVGIAREAHYHNAMSVGDTGRGSKIKGNNFGGLGAQQDGASIIAWRERGSAMIGEINNLAQIFVELGVYKVTLDLQYWFEKRAGVLAADIERVLPSAT----NDKASVDQSSAEKRPAKTPNLDPRLNRLNTLAMTRDLVTLAQSYGTPWRQVRSVALSGLARLGRRNRSNSGRESGKLQPAGSPHSSAAVFPVGLPKPIPDDARTKLAHPVFWELHLEPAASGGDGGNGAFGATETISYTMATAGLFQLKGADEAPVFSVGAARAAQAALEDCPACLVPEVLSCVAGVESIAELTRRQQVSRAKGDAL-GDGKAATFVCEHRFVPW 2540
MDENF+PNRAV + + S VAD +A L+A+L + DG VA+AGDVVA+RAGP TYHP+KA+KGMASESDVI+LSCL KAP AG AA VRS LQ V+VR PS T T++ GP GG AAAA VG P LR+I PS+++A+VD+ LL AF +RAR+ILAGL+P PAE LPTVV G+ G CFLGQRA+ G S+FS RR + A LRI+ L+ + G HASARALYDL + S GD LG C+++G PFARLATEW S+ TRTLGS PP ACSSLLL+GG CP + +A +R DI++L A+ + + R KG FG + D + G G+E ER ++W+ DL+ALLSGSEN+AE AA+ G S+D +++ ++EDT + RTD GG ++ + RGDLDFSE LWELAARA +GVRSA++ AF+AVGEG IFPVI R++ TAVG HIR+GV +AREA Y + S D A AWRERGSA++ + + LA +FVELGV+KVT DL +W E AGVLAAD++R LP+A DK + + R D RL+RL TLA T DLV LAQSYG PWRQVRS+ALSGL L R AG P SS+ VF +GLPKPIP AR KLAHPVFWEL+LEPA GG+G GA ET+SYT+A AGLFQL DE P S AARAAQAAL DCPA L+PEVLS V G ES EL RR + +A G ++ GD A FVCEH F+PW
Sbjct: 1 MDENFDPNRAVHWPSGAVSSEP---------SPSKQVADEDAPLVAVLSALEDGQVAIAGDVVAIRAGPETYHPVKALKGMASESDVIILSCLTKAPTAGEAASAVRSALQHVVVRPPSVT-THSPGP--GGRAAAAGGVGVAPALRAISPSSYSAVVDSNLLRAFTATRARMILAGLTPPPAEGESRTLPTVVVGVSGAPDGLCFLGQRATPEGHSSFSFRRDSEQEAAGGRAQALRIDDLVREYGGRAHASARALYDLWGDSS-GDFLGECLQEGAKLSPFARLATEWDCSTHATRTLGSAPPPACSSLLLIGGECPPTTVSAKIRGDIDVLKTAVERGVAPQQTRRKT--KGPFGGGRGDTGRDEALPGGTCAPGDGEEQER-RRWDEDLQALLSGSENMAEFAAKPVDVPVGG---GGSDDALEAGRAEEDTA--------VQDRTDGGGLGEEEVGSGMQEVPEKVRGDLDFSERLWELAARATDVKGVRSAVALAFNAVGEGQIFPVISRDSKTAVGCHIRDGVAMAREARYQDGTSA------------------CLGDEAKAEAWRERGSALLADEDALASVFVELGVHKVTRDLLHWLEAYAGVLAADVDRALPAAAAAAVGDKPAPGTGGSAAR-------DRRLDRLLTLADTLDLVALAQSYGAPWRQVRSLALSGLTALQR------------PPVAGPPPSSSPVFSLGLPKPIPPCARCKLAHPVFWELYLEPA-----GGSGVGGAMETVSYTLANAGLFQLSRLDEPPALSGEAARAAQAALSDCPARLIPEVLSSVTGAESFVELKRRLLMHKANGASVAGD---AVFVCEHSFIPW 783
BLAST of mRNA_H-paniculata_contig477.11824.1 vs. uniprot
Match: D7G850_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G850_ECTSI) HSP 1 Score: 612 bits (1578), Expect = 2.360e-205 Identity = 409/852 (48.00%), Postives = 499/852 (58.57%), Query Frame = 3
Query: 60 MDENFNPNRAVDGSTAVIMDCAFADAKADCLDDSAAVADVEASLIAILGGMGDGDVAVAGDVVAVRAGPATYHPLKAIKGMASESDVILLSCLAKAPAAGHAAEVVRSVLQRVLVRKPSATSTNTAGPTRGGSAAAAASVGPMPHLRSICPSAHTALVDARLLCAFPVSRARIILAGLSPSPA--EMPELPTVVAGIVGDASSRCFLGQRASSAGFSAFSLRRHEVEPDA-----TLRIEALITDCGPGTHASARALYDLREEMSDGDVLGGCMRDGGDSGPFARLATEWAYSSDTTRTLGSQPPAACSSLLLVGGTCPRSAANAALRDDIEILANALAQNFTTVRLPRSEGMKGHFGSIEDSGV----LH--GVRDDIAGKEHERMQQWEADLEALLSGSENLAELAARAA-FRRGDGENDNSSEDGVKSRGSDEDTTGEQTQNITFEMRTDEGG-----------DLGRRFRGDLDFSELLWELAARAFSAEGVRSALSRAFHAVGEGHIFPVIRRENLTAVGRHIREGVGIAREAHYHNAMSVGDTGRGSKIKGNNFGGLGAQQDGASIIAWRERGSAMIGEINNLAQIFVELGVYKVTLDLQYWFEKRAGVLAADIERVLPSATNDKASVDQSSAEKRPAKTPNLDPRLNRLNTLAMTRDLVTLAQSYGTPWRQVRSVALSGLARLGRRNRSNSGRESGKLQPAGSPHSSAAVFPVGLPKPIPDDARTKLAHPVFWELHLEPAASGGDGGNGAFGATETISYTMATAGLFQLKGADEAPVFSVGAARAAQAALEDCPACLVPEVLSCVAGVESIAELTRRQQVSRAKGDALGDGKAATFVCEHRFVPW 2540
MDENF+PNRAV + + S VAD +A L+A+L +GDG VA+AGDVVA+RAGP TYHP+KA+KGMASESDVI+LSCL KAPAAG AA VRS LQ V+VR PS T T++ GP GG AAAA VG P LR+I PS+++A+VD+ LL AF +RAR+ILAGL+P PA E LPTVVAG+ G CFLGQRA+ G S+FS RR + A LRI+ L+ + G HASARALYDL + S GD LG C+++G S PFARLATEW S+ TRTLGS PP ACSSLLL+GG CP + +A +R +IE L A+ + + R KG FG E G H G G+E ER ++W+ DL+ALLSGSEN+AE AA+ G G +D++ E G ++ + RTD GG ++ + RGDLDFSE LWELAARA EGVRSA++ AF AVGEG +FPVI R++ TAVG HIR+GV +AREA Y + S G D A AWRERGSA++ + ++LA FVELGV+KVT DL +W E AGVLAAD++R LP A+ D+ + + D RL+RL TLA T DLV LAQSYG PWRQ LAHPVFWEL+LEPA GG+G GA ET+SYT+A AGLFQL G DE P S AARAAQAAL CPA L+PEVLS V G ES EL RR +AKG +G A FVCEH F+PW
Sbjct: 1 MDENFDPNRAVHRPSGAVSSEP---------SPSKEVADEDAPLVAVLSALGDGQVAIAGDVVAIRAGPETYHPVKALKGMASESDVIILSCLTKAPAAGEAASAVRSALQHVVVRPPSVT-THSPGP--GGRAAAAGGVGVAPTLRAISPSSYSAVVDSNLLRAFTATRARMILAGLTPPPAGGESRTLPTVVAGVSGAPGGLCFLGQRATPEGHSSFSFRRDSEQEAAGGRAQALRIDDLVREYGGRAHASARALYDLWGDSS-GDFLGECLQEGAKSNPFARLATEWDCSTHATRTLGSAPPPACSSLLLIGGECPPTTVSAKIRGNIEALKTAVERGAAPQQARRKA--KGPFGG-EKGGTGRAEAHPGGASASGDGEEQER-RRWDEDLQALLSGSENMAEFAAKPVDVPVGGGGSDDTLE------------AGRAEEDTAVQDRTDGGGVGEEEVGSGMQEVPEKVRGDLDFSERLWELAARATDVEGVRSAVALAFDAVGEGQMFPVISRDSKTAVGCHIRDGVAMAREARYQDGTS------------------GCLGDEAKAEAWRERGSALLADEDSLASAFVELGVHKVTRDLLHWLEAYAGVLAADVDRALPDTAAAAAAGDRPAPGTGGSAAG--DRRLDRLLTLADTLDLVALAQSYGAPWRQ-------------------------------------------------------LAHPVFWELYLEPA-----GGSGVGGAMETVSYTLANAGLFQLSGLDEPPALSGEAARAAQAALSGCPARLIPEVLSSVTGAESFVELKRRLLEHKAKGATVGGD--AVFVCEHSFIPW 741
BLAST of mRNA_H-paniculata_contig477.11824.1 vs. uniprot
Match: A0A836C9H3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9H3_9STRA) HSP 1 Score: 115 bits (289), Expect = 1.330e-22 Identity = 186/730 (25.48%), Postives = 271/730 (37.12%), Query Frame = 3
Query: 489 PHLRSICPSAHTALV--DARLLCAFPVSRARIILAGLSPSPAEMPELPTVVAGIVGDASSRCFLGQR-ASSAGFSAFSLRRHEVEPDATLRIEALITDCGPGTHAS------------------ARALYDLREEMSDGDVLGGCMRDGGDSGPFARLATEWAYSSDTTRTLGSQPPAACSSLLLVGGTCPRSAANAALRDDIEILANALAQNFTTVRLPRSEGMKGHFGSIEDSGVLHGVRDDIAGKEHERMQQWEADLEALLSGSENLAELAARAAFRRGD-GENDNSSEDGVKSRGSDEDTTGEQTQNITFEMRTDEGGDLGRRFRGDLDFSELLWELAARAFSAEGVRSALSRAFHAVGEGHIFPVIRRENLTAVGRHIREGVGIAREAHYHNAMSVGDTGRGSKIKGNNFGGLGAQQDGASIIAWRERGSAMIGE---INNLAQIFVELGVYKVTLDLQYWFEKRAGVLAADIERVLPSATNDKASVDQSSAEKRPAKTPNL-----------DPRLNRLNTLAMTRDLVTLAQSYGTPWRQVRSVALSGLA--RLGRRNRSNSGRESGKLQPAGSPHSSAAVFPVGLPKPIPDDARTKLAHPVFWELHLEPAASGGDGGNGAFGATETISYTMATAGLFQLKGADEAPVFSVGAARAAQAALEDCPACLVPEVLSCVAGVESIAELTRRQQVSRAKGDALGDGKAAT----------FVCEHRFV 2534
P R CP + V D +L A RAR +L L+ ++ T+VA + G A C LGQR A G+ ++ + + + D G A+ RALY++ GD G D P L EW + R +G PPA C S L+VGG SAA H R AG++ W+ L+ LLS S A+ AA + F GD DN S +G D+ + T +I F RGDLDFSE LWE+AA + E + +AL++A AV G + P I N TAV I + A+E Y L +++ A+++ + + G A + VELG++KV D+++WF A + D+ L V R P+ + RL+ A ++VTLA + PW+Q R++A + LA R +F V LP+ +P R +L+ PVFWEL AA GG + T S+ + GL ++G G AAL P L EVL+CV G ++ A+ TR ++ + + + + AT VC HR V
Sbjct: 426 PSSRKSCPWFYDRGVVDDGSVLQALEPGRARTVLGQLAAEGFQL----TIVAAVRGPAGL-CCLGQRVAPRTGYETLAVHCRTSADEEKSDVLSTAADAVAGAAAAWLDAAFSGGGALPQPSMRVRALYEM---WGAGDSSEGAAADA----PTGALLCEWDCAGGRHRGVGDGPPATCRSQLIVGGRAMLSAA------------------------------------------CHTFR---AGEQ----PPWQGHLQQLLSAS---ADEAALSTF--GDESAADNGSSAVTAGQGPDDSMLLDATLDIGFSRSA---APTKIAVRGDLDFSERLWEVAANMATGEEMAAALTQAAAAVRAGSLLPAIGTHNTTAVAGAIAACLRRAQEQQYGGRSQAAT--------------LSSKRSEAAVLDAGPAAALLEGRPPSATEAAALLVELGLHKVANDMRHWFTLEAALSTGDLHWHLNCHVGAVDDVGDVEEHWRSPLAPHYRVXXXXXXXXXXQAIRRLSLAADAAEVVTLAAACSAPWQQTRALAQAALAAYRTPPXXXXXXXXXXXXXXXXXXXXXXXXLFLVHLPEVLPQSVRARLSRPVFWELIA--AAPGGXXXXXSAQVAVTQSHLVLERGLGGVRG---------GGGDGLHAALSAVPEELRAEVLACVLGADAAAK-TRSTATNKLQLEVSDNAEEATEHXXXXXXXXXVCTHRRV 1060
BLAST of mRNA_H-paniculata_contig477.11824.1 vs. uniprot
Match: A0A7S3YDZ2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YDZ2_HETAK) HSP 1 Score: 61.6 bits (148), Expect = 5.860e-8 Identity = 31/72 (43.06%), Postives = 43/72 (59.72%), Query Frame = 3
Query: 1404 RGDLDFSELLWELAARAFSAEGVRSALSRAFHAVGEGHIFPVIRRENLTAVGRHIREGVGIAREAHYHNAMS 1619
R DLDF+E LW++ + E V F A+ G IFPVI R+N TA+G ++REG+ IA+ Y + MS
Sbjct: 17 RKDLDFTEQLWDVLCLCNTQEDVEGVFEETFQALQNGLIFPVIGRDNNTALGMYLREGLRIAQATRYGSLMS 88 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig477.11824.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig477.11824.1 >prot_H-paniculata_contig477.11824.1 ID=prot_H-paniculata_contig477.11824.1|Name=mRNA_H-paniculata_contig477.11824.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=828bp MDENFNPNRAVDGSTAVIMDCAFADAKADCLDDSAAVADVEASLIAILGGback to top mRNA from alignment at H-paniculata_contig477:9756..13650- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig477.11824.1 ID=mRNA_H-paniculata_contig477.11824.1|Name=mRNA_H-paniculata_contig477.11824.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3895bp|location=Sequence derived from alignment at H-paniculata_contig477:9756..13650- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig477:9756..13650- >mRNA_H-paniculata_contig477.11824.1 ID=mRNA_H-paniculata_contig477.11824.1|Name=mRNA_H-paniculata_contig477.11824.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4968bp|location=Sequence derived from alignment at H-paniculata_contig477:9756..13650- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |