prot_H-paniculata_contig4768.11822.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4768.11822.1
Unique Nameprot_H-paniculata_contig4768.11822.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length572
Homology
BLAST of mRNA_H-paniculata_contig4768.11822.1 vs. uniprot
Match: D8LJ51_ECTSI (N/a n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ51_ECTSI)

HSP 1 Score: 259 bits (663), Expect = 1.590e-74
Identity = 223/403 (55.33%), Postives = 250/403 (62.03%), Query Frame = 0
Query:  152 SVQNRRRLERNAREQKRSLKITQRIEDLRRMLSQFGVDVKTSKSAVLSEATDYIAHLQRQQVHFEAERARLLQLLHQATQTSATATDTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-AGEVAIKSKPQEECFVGDGAGGLVDALLGDERPKHQAQPISATVASGAASGTSQGGITRDSGNQPASACSLPSDVFPGLSSARGQPSAIQFF-SAQGAGETLAPGMMVAGGAIQQIASV--GRVGRIETPPXXXXTLE------VATARALSHVNYERVFRTASVPMAIANVNGNLVDCNARLTLATGFQREEVLFMTIFDLVADPFLQHTFSMISSILNLPGVA-NPSSFQVLGKRRDGSHGG-VVQVSVVQDEAFRPLHFTICVLDN--TAGASA 540
            +VQN+RRLERNAREQKRSLKI+QRIEDLRRMLSQFGVDVK SKSAVLSEATDYIAHLQRQ    EAERAR+LQLLH +   S       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       AG   +  +P            ++D LL  +      +P SA  A                    A A   P    P     +G+   +  F S        A GM VA  A    A+   GR        XXXX          ATARALSHVNYERVFRT  +PMAIANVNGNLVDCN RLT  TGF++EE LFMTIFDLVADPFLQHTFSMISSIL++ GV  NP  FQV GK  +G+ GG VVQ+S V D+  RP+HF IC+LD+  T G SA
Sbjct:  266 TVQNKRRLERNAREQKRSLKISQRIEDLRRMLSQFGVDVKASKSAVLSEATDYIAHLQRQHAQSEAERARILQLLHNSRAASPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGGGDRGAGVGVVVERPSSNT--------MLDTLLSLDDDGDMGRPTSAMTA--------------------ARAMVFPPPTPP----QQGEEQIVPGFPSLSATARRGADGMPVAPSAAAGAAAXXXGRAXXXXXXXXXXXXXXXXXXNLAATARALSHVNYERVFRTLPMPMAIANVNGNLVDCNTRLTQVTGFRKEEALFMTIFDLVADPFLQHTFSMISSILSMRGVTGNPPFFQVPGKIFNGNPGGGVVQISAVHDDQLRPMHFCICILDSPATGGVSA 636          
BLAST of mRNA_H-paniculata_contig4768.11822.1 vs. uniprot
Match: A0A835YRU1_9STRA (BHLH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRU1_9STRA)

HSP 1 Score: 111 bits (277), Expect = 9.560e-24
Identity = 108/377 (28.65%), Postives = 148/377 (39.26%), Query Frame = 0
Query:  155 NRRRLERNAREQKRSLKITQRIEDLRRMLSQFGVDVKTSKSAVLSEATDYIAHLQRQQVHFEAERARLLQLLHQATQTSATATDTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGEVAIKSKPQEECFVGDGAGGLVDALLGDERPKHQAQPISATVASGAASGTSQGGITRDSGNQPASACSLPSDVFPGLSSARGQPSAIQFFSAQGAGETLAPGMMVAGGAIQQIASVGRVGRIETPPXXXXTLEVATARALSHVNYERVFRTASVPMAIANVNGNLVDCNARLTLATGFQREEVLFMTIFDLVADPFLQHTFSMISSILNLPGVAN--PSSFQVLGKRRDGSHGGVVQVSVVQDEAFRPLHFTI 529
            ++RRLERNAREQKRSLKI+QRI++LR +L Q G+ VK SKS VL E T+ I  L RQQ   EAERA +L                                                                          GLV  L                         S GG T                                    QG                                XXXX        A   ++Y+ +F  A++P+A+ ++NGN+V+CN+R+ +ATGF+R+E+L +T+F+LVAD +LQ +F++IS  L+ P  A   P    +  K RDG  GGV+ VS+V+D+  RP  F I
Sbjct:   19 DKRRLERNAREQKRSLKISQRIDELRLLLRQSGISVKNSKSHVLQEGTNLIKLLLRQQGALEAERAHML--------------------------------------------------------------------------GLVQML-------------------------SAGGNT------------------------------------QGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASVGMDYQLIFHNAAIPLAVCSINGNIVECNSRMCVATGFRRDELLLLTVFNLVADAYLQRSFALISGALSAPAAAGAPPQHVDLPCKVRDGRPGGVLSVSLVRDDIMRPRFFAI 260          
BLAST of mRNA_H-paniculata_contig4768.11822.1 vs. uniprot
Match: A0A835Z815_9STRA (BHLH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z815_9STRA)

HSP 1 Score: 109 bits (273), Expect = 7.200e-23
Identity = 133/383 (34.73%), Postives = 178/383 (46.48%), Query Frame = 0
Query:  153 VQNRRRLERNAREQKRSLKITQRIEDLRRMLSQFGVDVKTSKSAVLSEATDYIAHLQRQQVHFEAERARLLQLLHQATQTSATATDTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGEVAIKSKPQEECFVGDGAGGLVDALLGDERPKHQAQPISATVASGAASGTSQGGITRDSGNQPASACSLPSDVFPGLSSARGQPSAIQFFSAQGAGETLAPGMMVAGGAIQQIASVGRVGRIETPPXXXXTLEVATARALSHVNYERVFRTASVPMAIANVNGNLVDCNARLTLATGFQREEVLFMTIFDLVADPFLQHTFSMISSILNLPGVANPSSFQ------VLGKRRDGSHGGVVQVSVVQDEAFRPLHFTI 529
            V ++RRLERNAREQ+RSLKI+Q+I++LR +L Q GV VK+SKS +L EAT  I  LQR+Q   E ER  LLQL+   + +S+      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                                                                                       ASVG                         ++Y+ +F  A++P+A+ +VNGN+VDCNAR+   TG++REE+L +T+F+LVAD FLQ +F++IS +L + G A  ++ Q      +  K RDG  GGV+ +++V+DE  RP  F I
Sbjct:   64 VVDKRRLERNAREQRRSLKISQKIDELRALLRQSGVMVKSSKSNILQEATQLICALQRRQALLEGERNHLLQLVQGLSGSSSAQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------------------------------------------------------------------------------------------------------ASVG-------------------------MDYQLIFHNAAIPLAVGSVNGNIVDCNARMCAFTGYRREELLALTVFNLVADAFLQQSFALISGMLTVAGAAAAAAQQRGAHVDMPCKLRDGQPGGVLSIALVRDELLRPRFFAI 302          
BLAST of mRNA_H-paniculata_contig4768.11822.1 vs. uniprot
Match: A0A7S2CTA7_9STRA (Hypothetical protein n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CTA7_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 3.220e-6
Identity = 35/66 (53.03%), Postives = 49/66 (74.24%), Query Frame = 0
Query:  152 SVQNRRRLERNAREQKRSLKITQRIEDLRRMLSQFGVDVKTSKSAVLSEATDYIAHLQRQQVHFEA 217
            S  ++RRL+RNAREQ+RS KIT +I+ LR++L   G  VK++KS+VLSE  DYI  LQ+++   EA
Sbjct:  457 SAPDKRRLDRNAREQRRSKKITSQIDQLRQVLRAAGRPVKSNKSSVLSETADYIRDLQKKRQALEA 522          
BLAST of mRNA_H-paniculata_contig4768.11822.1 vs. uniprot
Match: A0A7R9W9V5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W9V5_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 9.220e-6
Identity = 35/69 (50.72%), Postives = 50/69 (72.46%), Query Frame = 0
Query:  157 RRLERNAREQKRSLKITQRIEDLRRMLSQFGVDV-KTSKSAVLSEATDYIAHLQRQQVHFEAERARLLQ 224
            +R ERNARE++RS +I+++I +LR +LS  GV V K +KSAVL+EA +YI  LQ+ Q   E +R  L+Q
Sbjct:   41 KREERNAREKERSFRISRQINELRNLLSSGGVIVPKGTKSAVLTEAANYIRMLQQHQYRSEIDRQHLVQ 109          
BLAST of mRNA_H-paniculata_contig4768.11822.1 vs. uniprot
Match: A0A7S1XXW7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XXW7_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.530e-5
Identity = 34/73 (46.58%), Postives = 50/73 (68.49%), Query Frame = 0
Query:  154 QNRRRLERNAREQKRSLKITQRIEDLRRMLSQFGVDVKTSKSAVLSEATDYIAHLQRQQVHFEAERARLLQLL 226
            + +RR ERN REQKRSLKI+++I++L  +L+  G  VK +KS++L EA  YI HLQ      E ER++ + +L
Sbjct:   99 EKKRRQERNHREQKRSLKISRKIDELHEILTDSGRMVKANKSSILREAFSYIMHLQGVLARKEYERSQFVNIL 171          
BLAST of mRNA_H-paniculata_contig4768.11822.1 vs. uniprot
Match: A0A7R9U539_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U539_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 3.150e-5
Identity = 33/73 (45.21%), Postives = 51/73 (69.86%), Query Frame = 0
Query:  154 QNRRRLERNAREQKRSLKITQRIEDLRRMLSQFGVDVKTSKSAVLSEATDYIAHLQRQQVHFEAERARLLQLL 226
            + RRR ERN REQ+RSLKI+++I++L  +L+  G +VK +KSA+L++A  YI +LQ      E ER + + +L
Sbjct:  154 EKRRRKERNQREQRRSLKISKKIDELHEILTGSGRNVKPNKSAILNDAHQYIQYLQSTMARKEFERNQFVDVL 226          
BLAST of mRNA_H-paniculata_contig4768.11822.1 vs. uniprot
Match: A0A7S3KX76_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KX76_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 4.100e-5
Identity = 35/73 (47.95%), Postives = 54/73 (73.97%), Query Frame = 0
Query:  153 VQNRRRLERNAREQKRSLKITQRIEDLRRMLSQFGVDV-KTSKSAVLSEATDYIAHLQRQQVHFEAERARLLQ 224
            +  R+R+ERNARE++RS +I+++I +LR +LS  GV V K +KS+VL+EA +YI  LQ+ Q   E +R +L+Q
Sbjct:  231 LDERKRVERNAREKERSFRISKQINELRGLLSSGGVIVPKGTKSSVLTEAANYIRMLQQHQYRSEIDRHQLIQ 303          
BLAST of mRNA_H-paniculata_contig4768.11822.1 vs. uniprot
Match: A0A1E7F7Q2_9STRA (HLH and PAS domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F7Q2_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 8.000e-5
Identity = 35/90 (38.89%), Postives = 55/90 (61.11%), Query Frame = 0
Query:  151 TSVQNRRRLERNAREQKRSLKITQRIEDLRRMLSQFGVDVKTSKSAVLSEATDYIAHLQRQQVHFEAERARLLQLLHQATQTSATATDTG 240
            T    RRR ERN REQ+RS KI+ +I++LR +LS+  V  K +K ++L +  +YI  LQ + +  +AE  +L+  +    QT+   T+TG
Sbjct:  358 TDPAERRRYERNLREQQRSSKISTQIKELREVLSECNVPFKPNKYSILLKVVEYIKQLQSRAIMLDAEHQKLITTVQ---QTNEMITNTG 444          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4768.11822.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LJ51_ECTSI1.590e-7455.33N/a n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ51_ECT... [more]
A0A835YRU1_9STRA9.560e-2428.65BHLH domain-containing protein n=1 Tax=Tribonema m... [more]
A0A835Z815_9STRA7.200e-2334.73BHLH domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S2CTA7_9STRA3.220e-653.03Hypothetical protein n=2 Tax=Florenciella parvula ... [more]
A0A7R9W9V5_9STRA9.220e-650.72Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S1XXW7_9STRA1.530e-546.58Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7R9U539_9STRA3.150e-545.21Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S3KX76_9STRA4.100e-547.95Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A1E7F7Q2_9STRA8.000e-538.89HLH and PAS domain-containing protein n=1 Tax=Frag... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 156..176
NoneNo IPR availableGENE3D3.30.450.20coord: 417..529
e-value: 1.1E-7
score: 33.4
NoneNo IPR availablePANTHERPTHR23261:SF22GROUND-LIKE (GRD RELATED)coord: 3..210
NoneNo IPR availablePANTHERPTHR23261GROUNDHOG-RELATEDcoord: 3..210
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainSMARTSM00353finuluscoord: 162..214
e-value: 3.4E-9
score: 46.6
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 157..209
e-value: 1.3E-10
score: 41.1
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROSITEPS50888BHLHcoord: 156..208
score: 13.383
IPR036638Helix-loop-helix DNA-binding domain superfamilyGENE3D4.10.280.10coord: 147..237
e-value: 4.5E-13
score: 50.9
IPR036638Helix-loop-helix DNA-binding domain superfamilySUPERFAMILY47459HLH, helix-loop-helix DNA-binding domaincoord: 148..219
IPR000014PAS domainTIGRFAMTIGR00229TIGR00229coord: 422..509
e-value: 1.0E-7
score: 30.1
IPR000014PAS domainPROSITEPS50112PAScoord: 419..462
score: 9.46
IPR035965PAS domain superfamilySUPERFAMILY55785PYP-like sensor domain (PAS domain)coord: 422..527

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4768contigH-paniculata_contig4768:7045..11001 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4768.11822.1mRNA_H-paniculata_contig4768.11822.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4768 6219..11169 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4768.11822.1 ID=prot_H-paniculata_contig4768.11822.1|Name=mRNA_H-paniculata_contig4768.11822.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=572bp
MSGCGAGRRGGNGGTAAFVVPTSLKTRLDKVNRPTVKEVRAFFFSSIRIR
RLQQIMTETQAQSKRSNIGSRGGRVDSKSRQRALGGVVGTGSTGATAGKK
DGRGGGGGGGARGKSRFKSSTSSTTTISMMNYGSDTGGGGGGGGSGEGKG
TSVQNRRRLERNAREQKRSLKITQRIEDLRRMLSQFGVDVKTSKSAVLSE
ATDYIAHLQRQQVHFEAERARLLQLLHQATQTSATATDTGGGGGALGGGE
TAAAEAADPAGEVVVARHGGGGGSGGAGEVAIKSKPQEECFVGDGAGGLV
DALLGDERPKHQAQPISATVASGAASGTSQGGITRDSGNQPASACSLPSD
VFPGLSSARGQPSAIQFFSAQGAGETLAPGMMVAGGAIQQIASVGRVGRI
ETPPPPPPTLEVATARALSHVNYERVFRTASVPMAIANVNGNLVDCNARL
TLATGFQREEVLFMTIFDLVADPFLQHTFSMISSILNLPGVANPSSFQVL
GKRRDGSHGGVVQVSVVQDEAFRPLHFTICVLDNTAGASAFVGGGRGGNP
GIMMATPNLRTPDGAVVGGLS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
IPR036638HLH_DNA-bd_sf
IPR000014PAS
IPR035965PAS-like_dom_sf