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Homology
BLAST of mRNA_H-paniculata_contig11840.1182.1 vs. uniprot
Match: D7FMW8_ECTSI (Inositol triphosphate receptor (IP3R)/ Ryanodine receptor like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMW8_ECTSI) HSP 1 Score: 206 bits (525), Expect = 5.700e-55 Identity = 166/418 (39.71%), Postives = 215/418 (51.44%), Query Frame = 1
Query: 7 GVFGRSFQASIHAIEGEGDGTGDESQMGNFRLLSSLADGSAVRVTDIQISVMRVLTLMLAHDMDGQIDEVLKLAEAFDFDEDAFRFRTSLG-EKPTATFNGEDIWGVVHN-GGSGLLAGASGK---GTMQNLAQTLLKLAAAGRDRGVAGSAKLTSRSFALLFRISDQGNQLAREACKVTLLNGRAAAETHRRLARGVAALKAFARRRRG-----GATTGQISSR---AGGVPSAQPTPLLVRVVDDNDKSVGSAATEKGGSFSLVESAVS----NVGTGGGGPDERGHQRSMAMRRTVGESGGLSKVAAAQAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAWLTSEEAEAEQDNVMEALEEIRAVLEADRDEQDARTGAGCGGAEVERVARGLGLAPTLLGGLRALKQE 1209
G+FG + + G G G S +LL SLAD AV +TD ++SVMRVLTL+L H++D Q+D+VL LA +D +E+AFRF +K AT+ G+DIW +VHN GG+GLLAG G+ + NL+ TLL+LA AG++ G AG LT+RSFALLFRISDQGNQLAREA KVT L GRAA+ETHR L R V AL+AF+RRR G T G + R GG E G + +A + + GTG PDE G + A + S ++A A +A +AE+ +V EAL E+R VL A R++ D AEVERVA G+GL LLG LRAL++E
Sbjct: 1790 GMFGGTSRRESSVGGGVGSGAKISSAS---KLLGSLADEDAVGITDTEVSVMRVLTLLLGHELDKQLDKVLWLARKYDKNENAFRFSFDASTDKMVATYKGKDIWSLVHNSGGAGLLAGREGEINAHNLSNLSGTLLRLAVAGQESGRAGGPTLTARSFALLFRISDQGNQLAREARKVTQLTGRAASETHRGLNRAVMALRAFSRRRAGRPAMLADTVGNSNGRNVLVGGSSERLXXXXXXXXXXXTKPLPRKGTGESGAPVKVTRTAAARGEEDGGTGASPPDEAGADVARARSLSAIFSAAPPRLAPAPSAQDAPAAPVSAAPTGLGTDLISAL--------------------QAEEKSVSEALGEVRRVLMAGREDADGAQ------AEVERVAAGVGLPAALLGALRALRRE 2178
BLAST of mRNA_H-paniculata_contig11840.1182.1 vs. uniprot
Match: A0A6H5KQK2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQK2_9PHAE) HSP 1 Score: 171 bits (433), Expect = 7.740e-43 Identity = 101/173 (58.38%), Postives = 127/173 (73.41%), Query Frame = 1
Query: 118 DGSAVRVTDIQISVMRVLTLMLAHDMDGQIDEVLKLAEAFDFDEDAFRFRTSLG-EKPTATFNGEDIWGVVHN-GGSGLLAGASGK---GTMQNLAQTLLKLAAAGRDRGVAGSAKLTSRSFALLFRISDQGNQLAREACKVTLLNGRAAAETHRRLARGVAALKAFARRRRG 621
D AV +TD ++SVMRVLTL+L H++D Q+D+VL LA +D +E+AFRF K AT+ G+DIW +V N GG+GL+AG G+ + NL+ TLL+LA AG++ G AG LT+RSFALLFRISDQGNQLAREA KVT L GRAA+ETHR L R V AL+AF+RRR G
Sbjct: 976 DEDAVGITDTEVSVMRVLTLLLGHELDKQLDKVLWLARKYDENENAFRFSFDASTNKMVATYKGKDIWSLVRNSGGAGLVAGKEGEMNTHNLPNLSGTLLRLAVAGQESGRAGGPTLTARSFALLFRISDQGNQLAREARKVTQLTGRAASETHRGLTRAVMALRAFSRRRAG 1148
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 210.7 |
Seed ortholog evalue | 1.3e-51 |
Seed eggNOG ortholog | 2880.D7FMW8 |
Preferred name | RYR1 |
KEGG ko | ko:K04958,ko:K04960,ko:K04961,ko:K04962,ko:K04963 |
KEGG TC | 1.A.3.1,1.A.3.1.2,1.A.3.2 |
KEGG Pathway | ko04020,ko04022,ko04024,ko04070,ko04114,ko04140,ko04210,ko04218,ko04260,ko04261,ko04270,ko04371,ko04540,ko04611,ko04621,ko04713,ko04720,ko04723,ko04724,ko04725,ko04726,ko04728,ko04730,ko04742,ko04745,ko04750,ko04911,ko04912,ko04915,ko04918,ko04921,ko04922,ko04924,ko04925,ko04927,ko04934,ko04970,ko04971,ko04972,ko05010,ko05016,ko05167,ko05205,ko05410,ko05412,ko05414,map04020,map04022,map04024,map04070,map04114,map04140,map04210,map04218,map04260,map04261,map04270,map04371,map04540,map04611,map04621,map04713,map04720,map04723,map04724,map04725,map04726,map04728,map04730,map04742,map04745,map04750,map04911,map04912,map04915,map04918,map04921,map04922,map04924,map04925,map04927,map04934,map04970,map04971,map04972,map05010,map05016,map05167,map05205,map05410,map05412,map05414 |
Hectar predicted targeting category | other localisation |
EggNOG free text desc. | inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity |
EggNOG OGs | KOG3533@1,KOG3533@2759 |
COG Functional cat. | S |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
BRITE | ko00000,ko00001,ko01009,ko04040,ko04147 |
Exons | 8 |
Model size | 1231 |
Cds size | 1230 |
Stop | 0 |
Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig11840.1182.1 >prot_H-paniculata_contig11840.1182.1 ID=prot_H-paniculata_contig11840.1182.1|Name=mRNA_H-paniculata_contig11840.1182.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=410bp
RDGVFGRSFQASIHAIEGEGDGTGDESQMGNFRLLSSLADGSAVRVTDIQ ISVMRVLTLMLAHDMDGQIDEVLKLAEAFDFDEDAFRFRTSLGEKPTATF NGEDIWGVVHNGGSGLLAGASGKGTMQNLAQTLLKLAAAGRDRGVAGSAK LTSRSFALLFRISDQGNQLAREACKVTLLNGRAAAETHRRLARGVAALKA FARRRRGGATTGQISSRAGGVPSAQPTPLLVRVVDDNDKSVGSAATEKGG SFSLVESAVSNVGTGGGGPDERGHQRSMAMRRTVGESGGLSKVAAAQAAA ASAIADATEAAAAASKAASAAAQAVQSAASAAVTAWLTSEEAEAEQDNVM EALEEIRAVLEADRDEQDARTGAGCGGAEVERVARGLGLAPTLLGGLRAL KQEGDNGGWG back to topmRNA from alignment at H-paniculata_contig11840:1444..6006+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig11840.1182.1 ID=mRNA_H-paniculata_contig11840.1182.1|Name=mRNA_H-paniculata_contig11840.1182.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4563bp|location=Sequence derived from alignment at H-paniculata_contig11840:1444..6006+ (Halopteris paniculata Hal_grac_a_UBK monoicous) CGGGACGGTGTTTTCGGTCGATCCTTCCAAGCCAGGCACGACTGAAATCT
TTAGCTCTTGTCTTGTAACTTGTGGTACAGGTCGATCGGTAACCATATTG
AAGACAATCGAAATTGTGGATGTGGTTGTCCATCCTTTGCTTGTACTGTT
CGATCGTTTCCCTTCAAGCGCCTGATCCACCAACGTCGTCACGTGAGTTG
GCCAACCATCACTCCGTGCATTGCCCTCTCGCACCCTTTCTCCATCGTTC
CTGTTGAAGTAGCATTCACGCAATAGAGGGCGAAGGAGATGGAACCGGTG
ATGAAAGTCAGATGGGAAATTTCCGATTGCTAAGCTCCTTGGCAGACGGG
TCTGCAGTTCGCGTTACAGACATCCAGGTCTGTTTATTTACACATCTCGA
GCTGATGCAAGCGTTGTACGAAAGCTGGCGACGTTCCGCGCAAGCTGTTT
CAATTCCTGCCATAAGCGGATAGGGTCAACCTGAGAAAACAGATAAGTTT
AGAACGCCATAGTTGAGGGCTAAAATCCCGGGTAGACCTTCTATAATTGG
TCGACAAGGACGCCCCACAGTTAGGGCTTCGGTGGTGCAGACTCTCGCGC
TTGCGGCGAGAAGGATTCCTTGACGAGGACACTATACACCAAAAACCATT
CACAAGGATCAAAATTCGACGTCTGTACTTTGTAAAACCAAAAACTCGAC
GCATGCTACACATGGAACGAAATTGCCTCGGCGGATGACCGCTGTCAGCA
TGTACCACGCCCTCGATATGGATATTTCCATGTGTTTCAAAAAGTGAAGC
AGCCCACACATTCATTTGATCCTGTAAATTTAAGTAATTAGAGGTGAAAT
GTCATTACTGACTGTCGACTGTCGGTAAGTTATTTCGCTGTGGTGGCAGA
GGAGACCATGCCAAGAGGCAGGCATGCTCTCATAGTGAAGCCGGACATTT
CAATACGTGGTGCATTCGCCACGGAGACCTGTGTGTGAAGGACCATTGTG
CTCCTGCAAGTTGGTGATCTTGTTGAATTGAGAGACCGGTATCAAGTGAA
TCGATCGTTTTAGTTTATGTGAAAATTGGTCGCGTCATGACACACTACGA
GTTATCAGTTTCATTCCGCCGCGCTCGAATGATTCGATAATTGTTTATTT
CTGGATTTGAATCTGAGGAGTAGAACAAGTTGCGGCCTCAATACTGCACT
GCTTGTCTAGTTGTGGTGGAGTTTTCAAACGCCTCGGATTAGAAGAATAG
GTTTCCTCACGGTACCGCCTTGTCTGGCTCGCTTCCTTGTGAAGGCATTG
ATTGGTCATATATAACAGCTGGTGAAAAGTAGCACTCATTCTCTGTATTC
GTGTTTCGCCTTTTTTGGCAAGTGGATCTGCCCAAGACGAAAACTTCGGT
TGTGATCGAGGTGTTGATGTCCCTGCTGAGTAAGAGATTTGAATGGATAT
CTTGCACATTACGCGCTTAGAGAGCATGTTATCCACCCGTTATTTCCCGC
CTCGTCTACCCCTCTCTCATAATCTAACATTTCCGCGTGATATCATCGCT
TTCGTTCGGTTTTGCTTGTGGCCGCAGATATCGGTCATGAGAGTGCTGAC
ACTCATGCTGGCACACGACATGGACGGACAGATCGATGAGGTTTTGAAAC
TGGCCGAGGCTTTCGACTTCGATGAGGACGCCTTCCGATTCAGGCACGGA
TGATTATCGGTTAAGAGCCCGTTTCTCGCAAGTTGTACCCGATCTATGTC
ATTATCGTCCACCGATTCTTGAAATCGTCTCCCCGCATGGTGCACCATGG
GTATCCGAGACACATTGTACTCGACGTTCGATGTATGGTGGGGTGCATGC
AGTAAACGTGTTTTGGCGTCTCTTTCTCGAGGGTCATTTGCTTTCCTTCT
GTTTTAGCGGGATTGCGCACCTTCATGCGATATGAGAGTAGCTGAGGCCT
ATCCTGAATCCCACTGCTTTCTCTCCACCATCGTATATTTTGCAGCTAGG
TCAAGAGGTAGGAATGTAAGCCGATCGATCACGCGTGCGAACGATGGTCC
GTAGAGAGACGCCATGTTCATGTGCCAGATACAGCAGATTTTCTGTACTT
GAAATGAAGGGTAACACATGGTTCTTGCGAGGCCATGGGGTCAGCGGCCG
ACGAAATGTTAAGTTAGGACAAGCAACATTCGAGAGGATGTATTAATCCG
GTTCGCCTTTACGGTACCACGTCCTTCATGTCGTGAACAATGCCGGGTGA
AAGAAACGCTCATATCTGCATGCGATGCCATTGAAAACGCATGGCCCACT
TCAACTGGCAAAGGCGCCCGCAAGTTGCTTCGTCGTGAGTATGCTGCCCC
CCCCCCGCCTTCTCCGCCTCTCCTTCTCCGTACGTTAGAACGAGTCTAGG
AGAAAAGCCGACGGCTACGTTTAACGGTGAAGATATCTGGGGTGTGGTGC
ACAACGGGGGTAGCGGATTGCTGGCCGGCGCGTCAGGCAAGGGGACAATG
CAAAATCTCGCTCAAACGCTCTTGAAACTCGCGGCGGCTGGGAGAGACAG
GGGTGTCGCGGGTAGCGCAAAACTAACCTCGAGGCAAGTCGACGATGGAA
CGGTCTTCCCTTGAGCTTCTTTGCGGTTTTCCCAGGTCCAATCAATACCT
ATTTTTTTTCTGTTTGCATCCCATACGCCTGTTTCATACGCCAGTTTTTT
CTTCGCTGTTCACAATGCTATCTAACAACGTAGTATGATGTGGGGTCCCC
ACGTCATCTTCGCAGACATGGGGGAATTGACTCTATGCCCCACCCGTCGC
TGTCACAGGTCGTTCGCCTTGCTCTTCAGAATAAGTGACCAGGGGAACCA
GCTAGCCCGCGAAGCATGCAAAGTAACTTTGCTGAACGGCCGCGCGGCTG
CCGAGACTCATCGCCGTCTAGCGCGTGGCGTGGCTGCCCTAAAAGCGTTT
GCGCGTCGGCGGCGGGGGGGTGCCACCACTGGACAAATATCCTCGCGTGC
CGGCGGCGTCCCTTCTGCGCAACCAACACCGCTCCTGGTGCGTGTGGTAG
ACGACAATGACAAGAGCGTTGGTTCTGCCGCCACGGAGAAAGGTGAGAAT
ATATGTGGGGTGCCAGACAGAGGCATGGGCAGGAATGGTAGTTTAAGCAA
AGAAAGGCAAACACGTTGGGTTGGGAGTCAGGTGGGCAGTGGGACTTCGG
ATGAGGGTAAGGATGATGGTTCAGGGGCTTTCAACGCAGTTGGGATCTGA
GAGTTTCGGGCTGTCGGACTCTAGTGTGCCATTGGAACATTCACCACGCC
CGGCGATTGCGCCTGCAGGTGGTAGCTTCAGCCTGGTGGAATCCGCTGTT
TCCAACGTTGGCACTGGCGGCGGCGGTCCGGACGAACGCGGTCACCAACG
TGAGATATTATTGGTGTTGTACTCGCGGGTCCATTTCGCGCAATTTTGGG
GTATTTTCTCTACGAATATATACCATGTACCTTCTGCTTGCATGCGCGTC
GTGACTGATGGCGGTGATATCCGACGAGGAGTGTTTTATGTCAAGTTGCA
GCCACAACCATTATTCCTACGTCGTAACATTCGCTATTGCTTGACATATG
TGCACATTGTCTTCCCTCTCGCCCCTGTATCGTTGCAGGCTCTATGGCGA
TGAGGCGAACAGTTGGTGAAAGTGGGGGACTTTCCAAAGTCGCGGCTGCT
CAGGCGGCGGCAGCATCGGCCATCGCGGATGCAACGGAAGCGGCCGCCGC
CGCTTCCAAAGCGGCAAGTGCGGCTGCACAGGCTGTCCAATCAGCAGCTT
CGGCTGCCGTGACGGCGTGGCTAACGTCGGAGGAGGCCGAGGCGGAACAA
GACAATGTCATGGAGGCCCTTGAAGAGGTATGCTTTTATGATGACGATCT
AGGAGCTAGTTGGAATTCGATTATTGAAATACCCTTTTCGCGAGTGTTGT
ACGACCATCGTTCGAATCCCTTTGTTTGGGTTTAGCCGCTCTATCCGCAT
GTTAAATGTTAGCCTTAATGCATGTTGAACTAGATAGAGGTAGTGGGGTA
GCGATGTGACCGTAGAATAATATCAAGAAAAGCATACCCTTGAGGCCCCT
GAAACGGTGTTAAAAGTCATTATCCAATCGCTAAGGATATCATCCTGATT
TTTTTTGTATATTTTTCTTGCGTTTTTTTTTATCTTTCCGTTCATGAAAT
AGGCTAGAGTTTTACACCTCGAACACTCGAGATTTTTATATTTGATACGA
AAGCACAGTCTGCGTTGCAAATCGTTCTCTTTGGTAGGTGGTCTTGTGGT
GCCCACCATGTTGTGCAGTGCTGTTGCTGTACTACGATAGCTTGCTTCAC
TACCCTCTTCTTTCCGGTCCGGGAAATCCGCATGCATGTCCTGGCAGATA
AGGGCAGTGCTGGAAGCTGACCGCGATGAGCAGGACGCACGAACGGGGGC
AGGCTGCGGTGGAGCCGAAGTTGAGCGTGTAGCTCGAGGCTTAGGACTTG
CTCCAACGCTTTTGGGAGGTCTGAGAGCGTTGAAGCAGGAAGGAGACAAC
GGGGGATGGGGGA back to topCoding sequence (CDS) from alignment at H-paniculata_contig11840:1444..6006+ >mRNA_H-paniculata_contig11840.1182.1 ID=mRNA_H-paniculata_contig11840.1182.1|Name=mRNA_H-paniculata_contig11840.1182.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2460bp|location=Sequence derived from alignment at H-paniculata_contig11840:1444..6006+ (Halopteris paniculata Hal_grac_a_UBK monoicous) CGGGACGGTGTTTTCGGTCGATCCTTCCAAGCCAGCGGGACGGTGTTTTC GGTCGATCCTTCCAAGCCAGCATTCACGCAATAGAGGGCGAAGGAGATGG AACCGGTGATGAAAGTCAGATGGGAAATTTCCGATTGCTAAGCTCCTTGG CAGACGGGTCTGCAGTTCGCGTTACAGACATCCAGCATTCACGCAATAGA GGGCGAAGGAGATGGAACCGGTGATGAAAGTCAGATGGGAAATTTCCGAT TGCTAAGCTCCTTGGCAGACGGGTCTGCAGTTCGCGTTACAGACATCCAG ATATCGGTCATGAGAGTGCTGACACTCATGCTGGCACACGACATGGACGG ACAGATCGATGAGGTTTTGAAACTGGCCGAGGCTTTCGACTTCGATGAGG ACGCCTTCCGATTCAGATATCGGTCATGAGAGTGCTGACACTCATGCTGG CACACGACATGGACGGACAGATCGATGAGGTTTTGAAACTGGCCGAGGCT TTCGACTTCGATGAGGACGCCTTCCGATTCAGAACGAGTCTAGGAGAAAA GCCGACGGCTACGTTTAACGGTGAAGATATCTGGGGTGTGGTGCACAACG GGGGTAGCGGATTGCTGGCCGGCGCGTCAGGCAAGGGGACAATGCAAAAT CTCGCTCAAACGCTCTTGAAACTCGCGGCGGCTGGGAGAGACAGGGGTGT CGCGGGTAGCGCAAAACTAACCTCGAGAACGAGTCTAGGAGAAAAGCCGA CGGCTACGTTTAACGGTGAAGATATCTGGGGTGTGGTGCACAACGGGGGT AGCGGATTGCTGGCCGGCGCGTCAGGCAAGGGGACAATGCAAAATCTCGC TCAAACGCTCTTGAAACTCGCGGCGGCTGGGAGAGACAGGGGTGTCGCGG GTAGCGCAAAACTAACCTCGAGGTCGTTCGCCTTGCTCTTCAGAATAAGT GACCAGGGGAACCAGCTAGCCCGCGAAGCATGCAAAGTAACTTTGCTGAA CGGCCGCGCGGCTGCCGAGACTCATCGCCGTCTAGCGCGTGGCGTGGCTG CCCTAAAAGCGTTTGCGCGTCGGCGGCGGGGGGGTGCCACCACTGGACAA ATATCCTCGCGTGCCGGCGGCGTCCCTTCTGCGCAACCAACACCGCTCCT GGTGCGTGTGGTAGACGACAATGACAAGAGCGTTGGTTCTGCCGCCACGG AGAAAGGTCGTTCGCCTTGCTCTTCAGAATAAGTGACCAGGGGAACCAGC TAGCCCGCGAAGCATGCAAAGTAACTTTGCTGAACGGCCGCGCGGCTGCC GAGACTCATCGCCGTCTAGCGCGTGGCGTGGCTGCCCTAAAAGCGTTTGC GCGTCGGCGGCGGGGGGGTGCCACCACTGGACAAATATCCTCGCGTGCCG GCGGCGTCCCTTCTGCGCAACCAACACCGCTCCTGGTGCGTGTGGTAGAC GACAATGACAAGAGCGTTGGTTCTGCCGCCACGGAGAAAGGTGGTAGCTT CAGCCTGGTGGAATCCGCTGTTTCCAACGTTGGCACTGGCGGCGGCGGTC CGGACGAACGCGGTCACCAACGTGGTAGCTTCAGCCTGGTGGAATCCGCT GTTTCCAACGTTGGCACTGGCGGCGGCGGTCCGGACGAACGCGGTCACCA ACGCTCTATGGCGATGAGGCGAACAGTTGGTGAAAGTGGGGGACTTTCCA AAGTCGCGGCTGCTCAGGCGGCGGCAGCATCGGCCATCGCGGATGCAACG GAAGCGGCCGCCGCCGCTTCCAAAGCGGCAAGTGCGGCTGCACAGGCTGT CCAATCAGCAGCTTCGGCTGCCGTGACGGCGTGGCTAACGTCGGAGGAGG CCGAGGCGGAACAAGACAATGTCATGGAGGCCCTTGAAGAGGCTCTATGG CGATGAGGCGAACAGTTGGTGAAAGTGGGGGACTTTCCAAAGTCGCGGCT GCTCAGGCGGCGGCAGCATCGGCCATCGCGGATGCAACGGAAGCGGCCGC CGCCGCTTCCAAAGCGGCAAGTGCGGCTGCACAGGCTGTCCAATCAGCAG CTTCGGCTGCCGTGACGGCGTGGCTAACGTCGGAGGAGGCCGAGGCGGAA CAAGACAATGTCATGGAGGCCCTTGAAGAGATAAGGGCAGTGCTGGAAGC TGACCGCGATGAGCAGGACGCACGAACGGGGGCAGGCTGCGGTGGAGCCG AAGTTGAGCGTGTAGCTCGAGGCTTAGGACTTGCTCCAACGCTTTTGGGA GGTCTGAGAGCGTTGAAGCAGGAAGGAGACAACGGGGGATGGGGGATAAG GGCAGTGCTGGAAGCTGACCGCGATGAGCAGGACGCACGAACGGGGGCAG GCTGCGGTGGAGCCGAAGTTGAGCGTGTAGCTCGAGGCTTAGGACTTGCT CCAACGCTTTTGGGAGGTCTGAGAGCGTTGAAGCAGGAAGGAGACAACGG GGGATGGGGG back to top
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