mRNA_H-paniculata_contig47646.11819.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig47646.11819.1 vs. uniprot
Match: A0A182GIT5_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GIT5_AEDAL) HSP 1 Score: 165 bits (417), Expect = 1.340e-44 Identity = 93/203 (45.81%), Postives = 124/203 (61.08%), Query Frame = 1
Query: 25 LKGPQAEKWRAAMEEEWGALVYNGTWESEDLGRLPAGLKATHTKWIFKRKLKEDGSVARYKARLVAQGFSPVEVEDFFETSAPVACLSTLRTVFSLASEYDFELEGMDLDAAYLNAPAEEELFVKLPPEFSPFSRDVPFVRRLRNSLYGLTQSGQNWNNTLNGFLVGIGLDRSTTDSCLYSSRDDGGETNLLVAVYVDDLVIA 633
+KGP+AE W+AAM++E +L NGTW+ D LP G KA KWIFKRKL EDG+V RYKARLVAQGF+ D+ E APV T R + ++AS+ ++ D+ AYLN EE +F++ PP + +RD V L+ SLYGL Q+G WN + L + +S D CLY R+ G T L++ YVDD+VIA
Sbjct: 1 MKGPEAELWKAAMDDEMTSLRENGTWQLTD---LPPGRKAVGCKWIFKRKLDEDGNVVRYKARLVAQGFTQKFGTDYDEVFAPVVRQVTFRVLLTVASQRGMVVKHADVKTAYLNGELEESIFMRQPPGYEDENRDA--VCSLQKSLYGLKQAGYVWNKKFDQVLKRMKFQQSKNDPCLYVRRNGKGYTYLVI--YVDDMVIA 196
BLAST of mRNA_H-paniculata_contig47646.11819.1 vs. uniprot
Match: A0A182GDL1_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GDL1_AEDAL) HSP 1 Score: 158 bits (399), Expect = 5.140e-44 Identity = 89/222 (40.09%), Postives = 137/222 (61.71%), Query Frame = 1
Query: 1 QPKSAAEALKGPQAEKWRAAMEEEWGALVYNGTWESEDLGRLPAGLKATHTKWIFKRKLKEDGSVARYKARLVAQGFSPVEVEDFFETSAPVACLSTLRTVFSLASEYDFELEGMDLDAAYLNAPAEEELFVKLPPEFSPFSRDVPFVRRLRNSLYGLTQSGQNWNNTLNGFLVGIGLDRSTTDSCLYSSRDDGGETNLLVAVYVDDLVIAGR-REKVDELK 663
+P S EA++ +++ W+AAM+EE+ +L+ NGTW L LPAG KA +KW+FK+K G+V ++KARLVAQGFS D+ APVA +TLRT+ S+A + ++ +D+ +AYL+ +EEL+++ P F + V RL+ SLYGL Q + WN+T+ L IG +S D CL+S G + LL+ YVDD+++A E++D ++
Sbjct: 8 EPSSYEEAVRSSESDLWKAAMQEEYDSLMENGTWV---LAELPAGRKAIGSKWVFKKKEDSAGNVCKFKARLVAQGFSQQFGVDYDSVFAPVAAQTTLRTLLSVAGKKKMKVRHLDVKSAYLHGQLKEELYMQQPKGFVRRGEEK-LVCRLQRSLYGLKQGAKVWNDTICAILGEIGFHQSRADPCLFSKSVSGRQIYLLI--YVDDIIVASEVEEEIDPIE 223
BLAST of mRNA_H-paniculata_contig47646.11819.1 vs. uniprot
Match: A0A6S7IKL3_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7IKL3_PARCT) HSP 1 Score: 160 bits (406), Expect = 8.180e-42 Identity = 91/222 (40.99%), Postives = 142/222 (63.96%), Query Frame = 1
Query: 1 QPKSAAEALKGPQAEKWRAAMEEEWGALVYNGTWESEDLGRLPAGLKATHTKWIFKRKLKEDGSVARYKARLVAQGFSPVEVEDFFETSAPVACLSTLRTVFSLASEYDFELEGMDLDAAYLNAPAEEELFVKLPPEFSPFSRDVPFVRRLRNSLYGLTQSGQNWNNTLNGFLVGIGLDRSTTDSCLYSSRDDGGETNLLVAVYVDDLVIAGRRE-KVDELK 663
+P++ EAL PQ KW AME+E +L N W +L LP KA +KW+F+ K DG+V +KARLVAQGFS +D+ ET +PVA ++RTV +LA+++ +L MD+ A+LN +EE+++K P F ++ V RLR S+YGL +S + WN+ L+ L +G ++T D C+Y +++GGE ++AVYVDD+++AG+ + K++E+K
Sbjct: 511 EPRTVKEALSSPQKAKWVKAMEKEMESLKTNEVW---NLVELPENRKAVGSKWVFRIKTDADGTVETHKARLVAQGFSQTFGDDYDETFSPVARFESVRTVIALAAQHGLKLHQMDVTTAFLNGDLKEEVYMKQPEGFIEKGKEH-LVCRLRRSIYGLKKSPRCWNSVLDRKLKNMGFVQTTGDPCIYV-KEEGGEI-FIIAVYVDDILLAGKNDQKINEVK 726
BLAST of mRNA_H-paniculata_contig47646.11819.1 vs. uniprot
Match: A0A6S7JEY7_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JEY7_PARCT) HSP 1 Score: 159 bits (401), Expect = 1.340e-41 Identity = 91/222 (40.99%), Postives = 141/222 (63.51%), Query Frame = 1
Query: 1 QPKSAAEALKGPQAEKWRAAMEEEWGALVYNGTWESEDLGRLPAGLKATHTKWIFKRKLKEDGSVARYKARLVAQGFSPVEVEDFFETSAPVACLSTLRTVFSLASEYDFELEGMDLDAAYLNAPAEEELFVKLPPEFSPFSRDVPFVRRLRNSLYGLTQSGQNWNNTLNGFLVGIGLDRSTTDSCLYSSRDDGGETNLLVAVYVDDLVIAGRRE-KVDELK 663
+P++ EAL PQ KW AME+E +L N W +L LP KA +KW+F+ K DG+V +KARLVAQGFS +D+ ET +PVA ++RTV +LA+++ +L MD+ A+LN +EE+++K P F ++ V RLR S+ GL QS + WN+ L+ L +G ++T D C+Y +++GGE ++AVYVDD+++AG+ + K++E+K
Sbjct: 129 EPRTVKEALSSPQKTKWVKAMEKEMESLKTNEVW---NLVELPENRKAVGSKWVFRVKTDADGTVETHKARLVAQGFSQTFGDDYDETFSPVARFESVRTVIALAAQHGLKLHQMDVTTAFLNGDLKEEVYMKQPEGFIDKGKEH-LVCRLRRSICGLKQSPRCWNSVLDRKLKNMGFVQTTGDPCIYV-KEEGGEI-FIIAVYVDDILLAGKNDQKINEVK 344
BLAST of mRNA_H-paniculata_contig47646.11819.1 vs. uniprot
Match: A0A182G9H3_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182G9H3_AEDAL) HSP 1 Score: 154 bits (388), Expect = 2.680e-41 Identity = 90/216 (41.67%), Postives = 128/216 (59.26%), Query Frame = 1
Query: 1 QPKSAAEALKGPQAEKWRAAMEEEWGALVYNGTWESEDLGRLPAGLKATHTKWIFKRKLKEDGSVARYKARLVAQGFSPVEVEDFFETSAPVACLSTLRTVFSLASEYDFELEGMDLDAAYLNAPAEEELFVKLPPEFSPFSRDVPFVRRLRNSLYGLTQSGQNWNNTLNGFLVGIGLDRSTTDSCLYSSRDDGGETNLLVAVYVDDLVIAGRREK 648
+P++ EAL GP++E W+AA+EEE + N TW ++ LP+G KWIFKR++ E G V RYKARLVAQGF+ D+ E APV T RT+ S+A + + ++ MD+ AYLN +E +F+K PP ++++ V L+ LYGL ++ WN LN L +G S D CLYS R+ G T +AVYVDDL+I + E+
Sbjct: 137 EPRTIKEALDGPESELWKAAIEEELQSHKENCTW---NVVPLPSGRITIGCKWIFKRRMDESGKVVRYKARLVAQGFTQKIGTDYDEVFAPVVKQVTFRTLLSVAHQRNMLIKHMDVKTAYLNGELQETVFMKPPPGCDFGNQNL--VCHLQKGLYGLKEAANIWNKKLNSILRKLGFKPSENDPCLYSKRNSDG-TMAYIAVYVDDLIIVCKSEE 346
BLAST of mRNA_H-paniculata_contig47646.11819.1 vs. uniprot
Match: A0A6B0V9W6_IXORI (Putative polyprotein n=1 Tax=Ixodes ricinus TaxID=34613 RepID=A0A6B0V9W6_IXORI) HSP 1 Score: 152 bits (383), Expect = 4.360e-41 Identity = 90/221 (40.72%), Postives = 132/221 (59.73%), Query Frame = 1
Query: 4 PKSAAEALKGPQAEKWRAAMEEEWGALVYNGTWESEDLGRLPAGLKATHTKWIFKRKLKEDGSVARYKARLVAQGFSPVEVEDFFETSAPVACLSTLRTVFSLASEYDFELEGMDLDAAYLNAPAEEELFVKLPPEFSPFSRDVPFVRRLRNSLYGLTQSGQNWNNTLNGFLVGIGLDRSTTDSCLYSSRDDGGETNLLVAVYVDDL-VIAGRREKVDELK 663
P++ EAL P EKW+AA++ E L +GTWE L P + KW+F +K E+G + +YKARLVA G+S VE D+ ET +PV L ++RT+ ++A E ++++ +D+ AAYLN +E ++++ P F +D V L+ SLYGL QSG+ WN TL+ L G+ RS D C+Y S+ E L+V VYVD L VIA E++ + K
Sbjct: 94 PETLHEALSAPDKEKWKAAIQSELDTLEASGTWE---LVPRPKERQVVKCKWVFHKKYDENGDLEKYKARLVACGYSQVEGTDYKETFSPVVKLKSIRTLLAIAVERNWKIHQVDITAAYLNGTLKEAVYMEQPQPFGDCKKDE--VCLLKKSLYGLRQSGKEWNLTLDKLLKLQGMTRSKADPCVYVSK----ERRLIVGVYVDGLLVIAEGEEEIADSK 305
BLAST of mRNA_H-paniculata_contig47646.11819.1 vs. uniprot
Match: A0A5E8B667_9ASCO (Uncharacterized protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8B667_9ASCO) HSP 1 Score: 158 bits (400), Expect = 7.120e-41 Identity = 90/216 (41.67%), Postives = 132/216 (61.11%), Query Frame = 1
Query: 4 PKSAAEALKGPQAEKWRAAMEEEWGALVYNGTWESEDLGRLPAGLKATHTKWIFKRKLKEDGSVARYKARLVAQGFSPVEVEDFFETSAPVACLSTLRTVFSLASEYDFELEGMDLDAAYLNAPAEEELFVKLPPEFSPFSRDVPFVRRLRNSLYGLTQSGQNWNNTLNGFLVGIGLDRSTTDSCLYSSRDDGGETNLLVAVYVDDLVIAGRREKV 651
P S EA+ +AE W A E +L NGTWE D LP G KA ++KW+FK K K DGS+ RYKARLV GFS VE D+ ET APV T+R V ++A+++ F++ MD++ A+LN +E+++++ P F ++ V LR SLYGL Q+ WN ++G LV +G R+ +D +Y+ G T +++A+YVDDL+I+G +V
Sbjct: 1288 PSSFEEAMSSEEAEFWLEACVIEMSSLKRNGTWELVD---LPPGRKAINSKWVFKVKRKADGSIERYKARLVCIGFSQVEGIDYTETFAPVVRYETVRIVLAIAAQFGFQVHHMDVETAFLNGDLKEDIYMRQPKGFVVKGQESK-VCHLRKSLYGLKQAPLCWNEKIHGALVKLGFIRNESDYGVYTKGS--GSTMVIIALYVDDLLISGNSSEV 1497
BLAST of mRNA_H-paniculata_contig47646.11819.1 vs. uniprot
Match: A0A182GR37_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GR37_AEDAL) HSP 1 Score: 152 bits (383), Expect = 1.160e-40 Identity = 85/201 (42.29%), Postives = 122/201 (60.70%), Query Frame = 1
Query: 49 WRAAMEEEWGALVYNGTWESEDLGRLPAGLKATHTKWIFKRKLKEDGSVARYKARLVAQGFSPVEVEDFFETSAPVACLSTLRTVFSLASEYDFELEGMDLDAAYLNAPAEEELFVKLPPEFSPFSRDVPFVRRLRNSLYGLTQSGQNWNNTLNGFLVGIGLDRSTTDSCLYSSRDDGGETNLLVAVYVDDLVIAGRREKV 651
W+ AM+EE +LV N W L +LP G A KWIFK K ED RYKARLVA+GF+ + D+ +T +P+A + TLRTV +LA++ + + MD+ A+LN EE+++ P F RD V RL+ SLYGL Q+ ++WN + F+V +G RS D CLY R G+T +++ +YVDD++IA EK+
Sbjct: 110 WKQAMQEEMDSLVSNEKWT---LVKLPEGRNAVTCKWIFKLKHSEDNEAPRYKARLVARGFTQKQGFDYSDTYSPLARMDTLRTVLALANQRGWSVHQMDVKCAFLNGELTEEIYMLQPEGFE--QRDG-LVCRLKRSLYGLKQAARSWNERFHNFVVRLGFVRSRNDLCLY--RRGSGDTQVILVIYVDDVLIASGSEKL 302
BLAST of mRNA_H-paniculata_contig47646.11819.1 vs. uniprot
Match: A0A5E8C4W4_9ASCO (Integrase catalytic domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C4W4_9ASCO) HSP 1 Score: 157 bits (397), Expect = 1.520e-40 Identity = 89/216 (41.20%), Postives = 132/216 (61.11%), Query Frame = 1
Query: 4 PKSAAEALKGPQAEKWRAAMEEEWGALVYNGTWESEDLGRLPAGLKATHTKWIFKRKLKEDGSVARYKARLVAQGFSPVEVEDFFETSAPVACLSTLRTVFSLASEYDFELEGMDLDAAYLNAPAEEELFVKLPPEFSPFSRDVPFVRRLRNSLYGLTQSGQNWNNTLNGFLVGIGLDRSTTDSCLYSSRDDGGETNLLVAVYVDDLVIAGRREKV 651
P S EA+ +AE W A E +L NGTWE D LP G KA ++KW+FK K K DGS+ RYKARLV GFS VE D+ ET APV T+R V ++A+++ F++ MD++ A+LN +E+++++ P F ++ V L+ SLYGL Q+ WN ++G LV +G R+ +D +Y+ G T +++A+YVDDL+I+G +V
Sbjct: 708 PSSFEEAMSSEEAEFWLEACVIEMSSLKRNGTWELVD---LPPGRKAINSKWVFKVKRKADGSIERYKARLVCIGFSQVEGIDYTETFAPVVRYETVRIVLAIAAQFGFQVHHMDVETAFLNGDLKEDIYMRQPKGFVVKGQESK-VCHLKKSLYGLKQAPLCWNEKIHGALVKLGFIRNESDYGVYTKGS--GSTMVIIALYVDDLLISGNSSEV 917
BLAST of mRNA_H-paniculata_contig47646.11819.1 vs. uniprot
Match: A0A5E8CAT7_9ASCO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8CAT7_9ASCO) HSP 1 Score: 157 bits (397), Expect = 1.600e-40 Identity = 89/216 (41.20%), Postives = 132/216 (61.11%), Query Frame = 1
Query: 4 PKSAAEALKGPQAEKWRAAMEEEWGALVYNGTWESEDLGRLPAGLKATHTKWIFKRKLKEDGSVARYKARLVAQGFSPVEVEDFFETSAPVACLSTLRTVFSLASEYDFELEGMDLDAAYLNAPAEEELFVKLPPEFSPFSRDVPFVRRLRNSLYGLTQSGQNWNNTLNGFLVGIGLDRSTTDSCLYSSRDDGGETNLLVAVYVDDLVIAGRREKV 651
P S EA+ +AE W A E +L NGTWE D LP G KA ++KW+FK K K DGS+ RYKARLV GFS VE D+ ET APV T+R V ++A+++ F++ MD++ A+LN +E+++++ P F ++ V L+ SLYGL Q+ WN ++G LV +G R+ +D +Y+ G T +++A+YVDDL+I+G +V
Sbjct: 450 PSSFEEAMSSEEAEFWLEACVIEMSSLKRNGTWELVD---LPPGRKAINSKWVFKVKRKADGSIERYKARLVCIGFSQVEGIDYTETFAPVVRYETVRIVLAIAAQFGFQVHHMDVETAFLNGDLKEDIYMRQPKGFVVKGQESK-VCHLKKSLYGLKQAPLCWNEKIHGALVKLGFIRNESDYGVYTKGS--GSTMVIIALYVDDLLISGNSSEV 659 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig47646.11819.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig47646.11819.1 >prot_H-paniculata_contig47646.11819.1 ID=prot_H-paniculata_contig47646.11819.1|Name=mRNA_H-paniculata_contig47646.11819.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=224bp QPKSAAEALKGPQAEKWRAAMEEEWGALVYNGTWESEDLGRLPAGLKATHback to top mRNA from alignment at H-paniculata_contig47646:525..1196+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig47646.11819.1 ID=mRNA_H-paniculata_contig47646.11819.1|Name=mRNA_H-paniculata_contig47646.11819.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=672bp|location=Sequence derived from alignment at H-paniculata_contig47646:525..1196+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig47646:525..1196+ >mRNA_H-paniculata_contig47646.11819.1 ID=mRNA_H-paniculata_contig47646.11819.1|Name=mRNA_H-paniculata_contig47646.11819.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1344bp|location=Sequence derived from alignment at H-paniculata_contig47646:525..1196+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |