mRNA_H-paniculata_contig47643.11818.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig47643.11818.1
Unique NamemRNA_H-paniculata_contig47643.11818.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig47643.11818.1 vs. uniprot
Match: A0A8F0F7I1_9PHAE (Uncharacterized protein n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7I1_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 1.670e-48
Identity = 74/98 (75.51%), Postives = 84/98 (85.71%), Query Frame = 1
Query:    1 MCICLNCYRINNCSIYTSVAQKHKERVIFTKKIFYPQSPIIFGLNKFSKIKSFLIEWDVNECLSYQEEPGNWLFFSSPKLLV--SNTFSSYLVYDLIF 288
            MCICLNCYRI+NCSIY  VA KHKE +   KK+FYPQSPI+FGLNKFSKI SFLIEWD++ECLSYQ++PGNWLF SSPKL +  S  FSSYLVYDL+F
Sbjct:    1 MCICLNCYRIDNCSIYMVVALKHKEHIRTVKKMFYPQSPILFGLNKFSKINSFLIEWDISECLSYQDKPGNWLFSSSPKLTIPISYKFSSYLVYDLLF 98          
BLAST of mRNA_H-paniculata_contig47643.11818.1 vs. uniprot
Match: A0A8F0F818_9PHAE (Uncharacterized protein n=1 Tax=Pseudochorda nagaii TaxID=74379 RepID=A0A8F0F818_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 2.450e-33
Identity = 57/96 (59.38%), Postives = 72/96 (75.00%), Query Frame = 1
Query:    1 MCICLNCYRINNCSIYTSVAQKHKERVIFTKKIFYPQSPIIFGLNKFSKIKSFLIEWDVNECLSYQEEPGNWLFFSSPKLLVSNTFSSYLVYDLIF 288
            MCICLNC RINNC IY+ + QKH E+    + IF+PQSPI+  +N FSK K++L EWDVNECLSYQE+PG WL  + P++L S   SSYL +DL+F
Sbjct:    1 MCICLNCERINNCEIYSIIEQKHNEKRKRVENIFFPQSPILLCINFFSKKKNYLFEWDVNECLSYQEKPGKWLLLN-PEILGS---SSYLTFDLLF 92          
BLAST of mRNA_H-paniculata_contig47643.11818.1 vs. uniprot
Match: A0A0S0GLR5_COSCS (Conserved hypothetical plastid protein n=1 Tax=Costaria costata TaxID=2872 RepID=A0A0S0GLR5_COSCS)

HSP 1 Score: 112 bits (281), Expect = 1.390e-30
Identity = 54/97 (55.67%), Postives = 68/97 (70.10%), Query Frame = 1
Query:    1 MCICLNCYRINNCSIYTSVAQKHKERVIFTKKI-FYPQSPIIFGLNKFSKIKSFLIEWDVNECLSYQEEPGNWLFFSSPKLLVSNTFSSYLVYDLIF 288
            MCICLNC RINNC +Y+ V QKH E+  + KK  F+PQSP +  +N FSK   +L+EWDVNECLSYQE+PGNW+  S       +  SSYL +DL+F
Sbjct:    1 MCICLNCDRINNCEVYSIVEQKHNEKQAYKKKRQFFPQSPTLLCINFFSKNNLYLLEWDVNECLSYQEKPGNWMLISQKN----SKNSSYLSFDLLF 93          
BLAST of mRNA_H-paniculata_contig47643.11818.1 vs. uniprot
Match: A0A8F0FAC9_9PHAE (Uncharacterized protein n=2 Tax=Ecklonia TaxID=105406 RepID=A0A8F0FAC9_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 2.030e-30
Identity = 53/98 (54.08%), Postives = 70/98 (71.43%), Query Frame = 1
Query:    1 MCICLNCYRINNCSIYTSVAQKHKERVIF--TKKIFYPQSPIIFGLNKFSKIKSFLIEWDVNECLSYQEEPGNWLFFSSPKLLVSNTFSSYLVYDLIF 288
            MCICLNC RI+NC +Y  V QKH E+  +   KK+F+PQSP +  +N FSK K +L+EWDVNECLSYQE+PG+W+ F+       +  SSYL +DL+F
Sbjct:    1 MCICLNCNRIDNCKVYFIVEQKHNEKQKYYTKKKLFFPQSPTLLCINSFSKKKLYLLEWDVNECLSYQEKPGSWMSFNQKN----SRNSSYLSFDLLF 94          
BLAST of mRNA_H-paniculata_contig47643.11818.1 vs. uniprot
Match: A0A8F0F920_9PHAE (Uncharacterized protein n=1 Tax=Laminaria ephemera TaxID=309364 RepID=A0A8F0F920_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 4.090e-30
Identity = 53/98 (54.08%), Postives = 69/98 (70.41%), Query Frame = 1
Query:    1 MCICLNCYRINNCSIYTSVAQKHKERVIFTKKI--FYPQSPIIFGLNKFSKIKSFLIEWDVNECLSYQEEPGNWLFFSSPKLLVSNTFSSYLVYDLIF 288
            MCICLNC RI+NC +Y+ V QKH E+  + KK   F+PQSP +  +N FSK K +L+EWDVNECLSYQE+PG+W+ F+          SSYL +DL+F
Sbjct:    1 MCICLNCNRIDNCEVYSIVEQKHNEKKKYQKKTRQFFPQSPTLLCINFFSKKKLYLLEWDVNECLSYQEKPGSWMSFNQKNF----QHSSYLSFDLLF 94          
BLAST of mRNA_H-paniculata_contig47643.11818.1 vs. uniprot
Match: A0A8F0FAV1_9PHAE (Uncharacterized protein n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAV1_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 5.490e-30
Identity = 55/96 (57.29%), Postives = 68/96 (70.83%), Query Frame = 1
Query:    1 MCICLNCYRINNCSIYTSVAQKHKERVIFTKKIFYPQSPIIFGLNKFSKIKSFLIEWDVNECLSYQEEPGNWLFFSSPKLLVSNTFSSYLVYDLIF 288
            MCICLNC R+N C IY+ V QKH E+    +  F+PQSPI+  +N FSK  S+ IEWDVNECLSYQE+PG+WL   S +L     FSSYL +DL+F
Sbjct:    1 MCICLNCKRLNYCEIYSIVEQKHGEKKNNIQIFFFPQSPILACINFFSKKNSYTIEWDVNECLSYQEKPGSWLIKDSIEL----DFSSYLSFDLLF 92          
BLAST of mRNA_H-paniculata_contig47643.11818.1 vs. uniprot
Match: A0A6B7F232_9PHAE (Uncharacterized protein n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7F232_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 7.790e-30
Identity = 51/96 (53.12%), Postives = 69/96 (71.88%), Query Frame = 1
Query:    1 MCICLNCYRINNCSIYTSVAQKHKERVIFTKKIFYPQSPIIFGLNKFSKIKSFLIEWDVNECLSYQEEPGNWLFFSSPKLLVSNTFSSYLVYDLIF 288
            MCICLNC RIN C +Y  + Q+H+E +  T K F PQ+PI+F +N FSK   +L+EWDVNECLSY+E+PG+WL     +L VS    SYL++D++F
Sbjct:    1 MCICLNCARINGCRVYFLIEQQHQEMIKGTDKYFSPQAPILFCINFFSKKSLYLLEWDVNECLSYEEKPGSWLGGEQKRLSVS----SYLLFDILF 92          
BLAST of mRNA_H-paniculata_contig47643.11818.1 vs. uniprot
Match: A0A1I9LVZ6_9PHAE (Uncharacterized protein n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVZ6_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.570e-29
Identity = 52/96 (54.17%), Postives = 69/96 (71.88%), Query Frame = 1
Query:    1 MCICLNCYRINNCSIYTSVAQKHKERVIFTKKIFYPQSPIIFGLNKFSKIKSFLIEWDVNECLSYQEEPGNWLFFSSPKLLVSNTFSSYLVYDLIF 288
            MCICLNC RIN C +Y  + ++H+E++   KK F PQ PI+  LN F K + ++IEWDVNECLSYQE+PG+WL  +  KL     FSSYL++DL+F
Sbjct:    1 MCICLNCDRINKCRLYFIIEEQHQEKIKGLKKSFSPQGPILVCLNFFFKKRLYIIEWDVNECLSYQEKPGSWLDRNQKKL----KFSSYLLFDLLF 92          
BLAST of mRNA_H-paniculata_contig47643.11818.1 vs. uniprot
Match: A0A344PFD3_9PHAE (Uncharacterized protein n=1 Tax=Endarachne binghamiae TaxID=698476 RepID=A0A344PFD3_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.570e-29
Identity = 50/96 (52.08%), Postives = 71/96 (73.96%), Query Frame = 1
Query:    1 MCICLNCYRINNCSIYTSVAQKHKERVIFTKKIFYPQSPIIFGLNKFSKIKSFLIEWDVNECLSYQEEPGNWLFFSSPKLLVSNTFSSYLVYDLIF 288
            MCICLNC RIN+C +Y+ + Q+H+E++    K F PQ+PI+  +N FSK + + +EWDVNECLSYQE+PG+WL  +  +L     FSSYL++DL+F
Sbjct:    1 MCICLNCDRINSCRVYSIIEQQHQEKLKCQTKPFSPQAPILLCINFFSKKRLYTLEWDVNECLSYQEKPGSWLESNQKRL----NFSSYLLFDLLF 92          
BLAST of mRNA_H-paniculata_contig47643.11818.1 vs. uniprot
Match: A0A141BSE7_9PHAE (Ycf34 n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSE7_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.660e-29
Identity = 57/99 (57.58%), Postives = 74/99 (74.75%), Query Frame = 1
Query:    1 MCICLNCYRINNCSIYTSVAQKHKE---RVIFTKKIFYPQSPIIFGLNKFSKIKSFLIEWDVNECLSYQEEPGNWLFFSSPKLLVSNTFSSYLVYDLIF 288
            MCICLNC RI+NC+I+ S+ +KHKE   RVI  K  F+PQS I+  +N FSK K ++ EWDVN+CLSYQE+PG WL+FSS K L S+T   YL++D +F
Sbjct:    1 MCICLNCERIDNCNIFISIEKKHKENSKRVI--KTYFFPQSTILLCINFFSKKKLYVFEWDVNDCLSYQEKPGTWLYFSS-KPLKSST---YLLFDFLF 93          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig47643.11818.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0F7I1_9PHAE1.670e-4875.51Uncharacterized protein n=1 Tax=Protohalopteris sp... [more]
A0A8F0F818_9PHAE2.450e-3359.38Uncharacterized protein n=1 Tax=Pseudochorda nagai... [more]
A0A0S0GLR5_COSCS1.390e-3055.67Conserved hypothetical plastid protein n=1 Tax=Cos... [more]
A0A8F0FAC9_9PHAE2.030e-3054.08Uncharacterized protein n=2 Tax=Ecklonia TaxID=105... [more]
A0A8F0F920_9PHAE4.090e-3054.08Uncharacterized protein n=1 Tax=Laminaria ephemera... [more]
A0A8F0FAV1_9PHAE5.490e-3057.29Uncharacterized protein n=1 Tax=Desmarestia aculea... [more]
A0A6B7F232_9PHAE7.790e-3053.13Uncharacterized protein n=1 Tax=Cladosiphon okamur... [more]
A0A1I9LVZ6_9PHAE1.570e-2954.17Uncharacterized protein n=1 Tax=Pleurocladia lacus... [more]
A0A344PFD3_9PHAE1.570e-2952.08Uncharacterized protein n=1 Tax=Endarachne bingham... [more]
A0A141BSE7_9PHAE1.660e-2957.58Ycf34 n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A14... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig47643contigH-paniculata_contig47643:589..879 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size291
Cds size291
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930414.080189-CDS-H-paniculata_contig47643:588..8791622930414.080189-CDS-H-paniculata_contig47643:588..879Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47643 589..879 -
1691481281.1449795-CDS-H-paniculata_contig47643:588..8791691481281.1449795-CDS-H-paniculata_contig47643:588..879Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47643 589..879 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig47643.11818.1prot_H-paniculata_contig47643.11818.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig47643 589..879 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig47643.11818.1

>prot_H-paniculata_contig47643.11818.1 ID=prot_H-paniculata_contig47643.11818.1|Name=mRNA_H-paniculata_contig47643.11818.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=97bp
MCICLNCYRINNCSIYTSVAQKHKERVIFTKKIFYPQSPIIFGLNKFSKI
KSFLIEWDVNECLSYQEEPGNWLFFSSPKLLVSNTFSSYLVYDLIF*
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mRNA from alignment at H-paniculata_contig47643:589..879-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig47643.11818.1 ID=mRNA_H-paniculata_contig47643.11818.1|Name=mRNA_H-paniculata_contig47643.11818.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=291bp|location=Sequence derived from alignment at H-paniculata_contig47643:589..879- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGTATTTGTTTAAATTGTTATAGAATAAATAATTGTTCTATCTATAC AAGTGTTGCTCAAAAGCATAAAGAACGTGTTATTTTTACAAAAAAAATAT TTTATCCTCAATCTCCTATTATATTTGGTTTAAATAAGTTTTCAAAAATA AAATCATTTTTAATAGAATGGGATGTTAATGAATGTTTATCTTATCAAGA GGAACCAGGAAATTGGTTATTTTTTTCTAGTCCAAAATTATTAGTTTCTA ATACTTTTTCATCATATCTTGTTTATGATTTGATATTTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig47643:589..879-

>mRNA_H-paniculata_contig47643.11818.1 ID=mRNA_H-paniculata_contig47643.11818.1|Name=mRNA_H-paniculata_contig47643.11818.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at H-paniculata_contig47643:589..879- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGTATTTGTTTAAATTGTTATAGAATAAATAATTGTTCTATCTATAC
AAGTGTTGCTCAAAAGCATAAAGAACGTGTTATTTTTACAAAAAAAATAT
TTTATCCTCAATCTCCTATTATATTTGGTTTAAATAAGTTTTCAAAAATA
AAATCATTTTTAATAGAATGGGATGTTAATGAATGTTTATCTTATCAAGA
GGAACCAGGAAATTGGTTATTTTTTTCTAGTCCAAAATTATTAGTTTCTA
ATACTTTTTCATCATATCTTGTTTATGATTTGATATTTTGAATGTGTATT
TGTTTAAATTGTTATAGAATAAATAATTGTTCTATCTATACAAGTGTTGC
TCAAAAGCATAAAGAACGTGTTATTTTTACAAAAAAAATATTTTATCCTC
AATCTCCTATTATATTTGGTTTAAATAAGTTTTCAAAAATAAAATCATTT
TTAATAGAATGGGATGTTAATGAATGTTTATCTTATCAAGAGGAACCAGG
AAATTGGTTATTTTTTTCTAGTCCAAAATTATTAGTTTCTAATACTTTTT
CATCATATCTTGTTTATGATTTGATATTTTGA
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