mRNA_H-paniculata_contig47643.11818.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig47643.11818.1 vs. uniprot
Match: A0A8F0F7I1_9PHAE (Uncharacterized protein n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7I1_9PHAE) HSP 1 Score: 158 bits (399), Expect = 1.670e-48 Identity = 74/98 (75.51%), Postives = 84/98 (85.71%), Query Frame = 1
Query: 1 MCICLNCYRINNCSIYTSVAQKHKERVIFTKKIFYPQSPIIFGLNKFSKIKSFLIEWDVNECLSYQEEPGNWLFFSSPKLLV--SNTFSSYLVYDLIF 288
MCICLNCYRI+NCSIY VA KHKE + KK+FYPQSPI+FGLNKFSKI SFLIEWD++ECLSYQ++PGNWLF SSPKL + S FSSYLVYDL+F
Sbjct: 1 MCICLNCYRIDNCSIYMVVALKHKEHIRTVKKMFYPQSPILFGLNKFSKINSFLIEWDISECLSYQDKPGNWLFSSSPKLTIPISYKFSSYLVYDLLF 98
BLAST of mRNA_H-paniculata_contig47643.11818.1 vs. uniprot
Match: A0A8F0F818_9PHAE (Uncharacterized protein n=1 Tax=Pseudochorda nagaii TaxID=74379 RepID=A0A8F0F818_9PHAE) HSP 1 Score: 119 bits (299), Expect = 2.450e-33 Identity = 57/96 (59.38%), Postives = 72/96 (75.00%), Query Frame = 1
Query: 1 MCICLNCYRINNCSIYTSVAQKHKERVIFTKKIFYPQSPIIFGLNKFSKIKSFLIEWDVNECLSYQEEPGNWLFFSSPKLLVSNTFSSYLVYDLIF 288
MCICLNC RINNC IY+ + QKH E+ + IF+PQSPI+ +N FSK K++L EWDVNECLSYQE+PG WL + P++L S SSYL +DL+F
Sbjct: 1 MCICLNCERINNCEIYSIIEQKHNEKRKRVENIFFPQSPILLCINFFSKKKNYLFEWDVNECLSYQEKPGKWLLLN-PEILGS---SSYLTFDLLF 92
BLAST of mRNA_H-paniculata_contig47643.11818.1 vs. uniprot
Match: A0A0S0GLR5_COSCS (Conserved hypothetical plastid protein n=1 Tax=Costaria costata TaxID=2872 RepID=A0A0S0GLR5_COSCS) HSP 1 Score: 112 bits (281), Expect = 1.390e-30 Identity = 54/97 (55.67%), Postives = 68/97 (70.10%), Query Frame = 1
Query: 1 MCICLNCYRINNCSIYTSVAQKHKERVIFTKKI-FYPQSPIIFGLNKFSKIKSFLIEWDVNECLSYQEEPGNWLFFSSPKLLVSNTFSSYLVYDLIF 288
MCICLNC RINNC +Y+ V QKH E+ + KK F+PQSP + +N FSK +L+EWDVNECLSYQE+PGNW+ S + SSYL +DL+F
Sbjct: 1 MCICLNCDRINNCEVYSIVEQKHNEKQAYKKKRQFFPQSPTLLCINFFSKNNLYLLEWDVNECLSYQEKPGNWMLISQKN----SKNSSYLSFDLLF 93
BLAST of mRNA_H-paniculata_contig47643.11818.1 vs. uniprot
Match: A0A8F0FAC9_9PHAE (Uncharacterized protein n=2 Tax=Ecklonia TaxID=105406 RepID=A0A8F0FAC9_9PHAE) HSP 1 Score: 112 bits (280), Expect = 2.030e-30 Identity = 53/98 (54.08%), Postives = 70/98 (71.43%), Query Frame = 1
Query: 1 MCICLNCYRINNCSIYTSVAQKHKERVIF--TKKIFYPQSPIIFGLNKFSKIKSFLIEWDVNECLSYQEEPGNWLFFSSPKLLVSNTFSSYLVYDLIF 288
MCICLNC RI+NC +Y V QKH E+ + KK+F+PQSP + +N FSK K +L+EWDVNECLSYQE+PG+W+ F+ + SSYL +DL+F
Sbjct: 1 MCICLNCNRIDNCKVYFIVEQKHNEKQKYYTKKKLFFPQSPTLLCINSFSKKKLYLLEWDVNECLSYQEKPGSWMSFNQKN----SRNSSYLSFDLLF 94
BLAST of mRNA_H-paniculata_contig47643.11818.1 vs. uniprot
Match: A0A8F0F920_9PHAE (Uncharacterized protein n=1 Tax=Laminaria ephemera TaxID=309364 RepID=A0A8F0F920_9PHAE) HSP 1 Score: 111 bits (278), Expect = 4.090e-30 Identity = 53/98 (54.08%), Postives = 69/98 (70.41%), Query Frame = 1
Query: 1 MCICLNCYRINNCSIYTSVAQKHKERVIFTKKI--FYPQSPIIFGLNKFSKIKSFLIEWDVNECLSYQEEPGNWLFFSSPKLLVSNTFSSYLVYDLIF 288
MCICLNC RI+NC +Y+ V QKH E+ + KK F+PQSP + +N FSK K +L+EWDVNECLSYQE+PG+W+ F+ SSYL +DL+F
Sbjct: 1 MCICLNCNRIDNCEVYSIVEQKHNEKKKYQKKTRQFFPQSPTLLCINFFSKKKLYLLEWDVNECLSYQEKPGSWMSFNQKNF----QHSSYLSFDLLF 94
BLAST of mRNA_H-paniculata_contig47643.11818.1 vs. uniprot
Match: A0A8F0FAV1_9PHAE (Uncharacterized protein n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAV1_9PHAE) HSP 1 Score: 111 bits (277), Expect = 5.490e-30 Identity = 55/96 (57.29%), Postives = 68/96 (70.83%), Query Frame = 1
Query: 1 MCICLNCYRINNCSIYTSVAQKHKERVIFTKKIFYPQSPIIFGLNKFSKIKSFLIEWDVNECLSYQEEPGNWLFFSSPKLLVSNTFSSYLVYDLIF 288
MCICLNC R+N C IY+ V QKH E+ + F+PQSPI+ +N FSK S+ IEWDVNECLSYQE+PG+WL S +L FSSYL +DL+F
Sbjct: 1 MCICLNCKRLNYCEIYSIVEQKHGEKKNNIQIFFFPQSPILACINFFSKKNSYTIEWDVNECLSYQEKPGSWLIKDSIEL----DFSSYLSFDLLF 92
BLAST of mRNA_H-paniculata_contig47643.11818.1 vs. uniprot
Match: A0A6B7F232_9PHAE (Uncharacterized protein n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7F232_9PHAE) HSP 1 Score: 110 bits (276), Expect = 7.790e-30 Identity = 51/96 (53.12%), Postives = 69/96 (71.88%), Query Frame = 1
Query: 1 MCICLNCYRINNCSIYTSVAQKHKERVIFTKKIFYPQSPIIFGLNKFSKIKSFLIEWDVNECLSYQEEPGNWLFFSSPKLLVSNTFSSYLVYDLIF 288
MCICLNC RIN C +Y + Q+H+E + T K F PQ+PI+F +N FSK +L+EWDVNECLSY+E+PG+WL +L VS SYL++D++F
Sbjct: 1 MCICLNCARINGCRVYFLIEQQHQEMIKGTDKYFSPQAPILFCINFFSKKSLYLLEWDVNECLSYEEKPGSWLGGEQKRLSVS----SYLLFDILF 92
BLAST of mRNA_H-paniculata_contig47643.11818.1 vs. uniprot
Match: A0A1I9LVZ6_9PHAE (Uncharacterized protein n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVZ6_9PHAE) HSP 1 Score: 110 bits (274), Expect = 1.570e-29 Identity = 52/96 (54.17%), Postives = 69/96 (71.88%), Query Frame = 1
Query: 1 MCICLNCYRINNCSIYTSVAQKHKERVIFTKKIFYPQSPIIFGLNKFSKIKSFLIEWDVNECLSYQEEPGNWLFFSSPKLLVSNTFSSYLVYDLIF 288
MCICLNC RIN C +Y + ++H+E++ KK F PQ PI+ LN F K + ++IEWDVNECLSYQE+PG+WL + KL FSSYL++DL+F
Sbjct: 1 MCICLNCDRINKCRLYFIIEEQHQEKIKGLKKSFSPQGPILVCLNFFFKKRLYIIEWDVNECLSYQEKPGSWLDRNQKKL----KFSSYLLFDLLF 92
BLAST of mRNA_H-paniculata_contig47643.11818.1 vs. uniprot
Match: A0A344PFD3_9PHAE (Uncharacterized protein n=1 Tax=Endarachne binghamiae TaxID=698476 RepID=A0A344PFD3_9PHAE) HSP 1 Score: 110 bits (274), Expect = 1.570e-29 Identity = 50/96 (52.08%), Postives = 71/96 (73.96%), Query Frame = 1
Query: 1 MCICLNCYRINNCSIYTSVAQKHKERVIFTKKIFYPQSPIIFGLNKFSKIKSFLIEWDVNECLSYQEEPGNWLFFSSPKLLVSNTFSSYLVYDLIF 288
MCICLNC RIN+C +Y+ + Q+H+E++ K F PQ+PI+ +N FSK + + +EWDVNECLSYQE+PG+WL + +L FSSYL++DL+F
Sbjct: 1 MCICLNCDRINSCRVYSIIEQQHQEKLKCQTKPFSPQAPILLCINFFSKKRLYTLEWDVNECLSYQEKPGSWLESNQKRL----NFSSYLLFDLLF 92
BLAST of mRNA_H-paniculata_contig47643.11818.1 vs. uniprot
Match: A0A141BSE7_9PHAE (Ycf34 n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSE7_9PHAE) HSP 1 Score: 110 bits (274), Expect = 1.660e-29 Identity = 57/99 (57.58%), Postives = 74/99 (74.75%), Query Frame = 1
Query: 1 MCICLNCYRINNCSIYTSVAQKHKE---RVIFTKKIFYPQSPIIFGLNKFSKIKSFLIEWDVNECLSYQEEPGNWLFFSSPKLLVSNTFSSYLVYDLIF 288
MCICLNC RI+NC+I+ S+ +KHKE RVI K F+PQS I+ +N FSK K ++ EWDVN+CLSYQE+PG WL+FSS K L S+T YL++D +F
Sbjct: 1 MCICLNCERIDNCNIFISIEKKHKENSKRVI--KTYFFPQSTILLCINFFSKKKLYVFEWDVNDCLSYQEKPGTWLYFSS-KPLKSST---YLLFDFLF 93 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig47643.11818.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig47643.11818.1 >prot_H-paniculata_contig47643.11818.1 ID=prot_H-paniculata_contig47643.11818.1|Name=mRNA_H-paniculata_contig47643.11818.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=97bp MCICLNCYRINNCSIYTSVAQKHKERVIFTKKIFYPQSPIIFGLNKFSKIback to top mRNA from alignment at H-paniculata_contig47643:589..879- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig47643.11818.1 ID=mRNA_H-paniculata_contig47643.11818.1|Name=mRNA_H-paniculata_contig47643.11818.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=291bp|location=Sequence derived from alignment at H-paniculata_contig47643:589..879- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig47643:589..879- >mRNA_H-paniculata_contig47643.11818.1 ID=mRNA_H-paniculata_contig47643.11818.1|Name=mRNA_H-paniculata_contig47643.11818.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at H-paniculata_contig47643:589..879- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |