prot_H-paniculata_contig47643.11817.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig47643.11817.1
Unique Nameprot_H-paniculata_contig47643.11817.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length51
Homology
BLAST of mRNA_H-paniculata_contig47643.11817.1 vs. uniprot
Match: B8LGK2_9STRA (Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (Fragment) n=1 Tax=Xanthonema cf. bristolianum TaxID=449945 RepID=B8LGK2_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 2.960e-26
Identity = 47/51 (92.16%), Postives = 49/51 (96.08%), Query Frame = 0
Query:    1 MPEDVQERTRIKSERYESGVIPYAKMGYWDADYNVKDTDILALFRITPQPG 51
            M ++VQERTRIKSERYESGVIPYAKMGYWDADYNVK TDILALFRITPQPG
Sbjct:    1 MSKNVQERTRIKSERYESGVIPYAKMGYWDADYNVKHTDILALFRITPQPG 51          
BLAST of mRNA_H-paniculata_contig47643.11817.1 vs. uniprot
Match: A1BNI6_9PHAE (Ribulose bisphosphate carboxylase large chain n=1 Tax=Lessonia tholiformis TaxID=370575 RepID=A1BNI6_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.530e-25
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 0
Query:    1 MPEDVQERTRIKSERYESGVIPYAKMGYWDADYNVKDTDILALFRITPQPG 51
            MPE+VQERTR+KSERYESGVIPYAKMGYWDADYNVKDTDILALFRITPQPG
Sbjct:    1 MPENVQERTRLKSERYESGVIPYAKMGYWDADYNVKDTDILALFRITPQPG 51          
BLAST of mRNA_H-paniculata_contig47643.11817.1 vs. uniprot
Match: RBL_ECTSI (Ribulose bisphosphate carboxylase large chain n=2255 Tax=PX clade TaxID=569578 RepID=RBL_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 1.460e-24
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0
Query:    1 MPEDVQERTRIKSERYESGVIPYAKMGYWDADYNVKDTDILALFRITPQPG 51
            MPEDVQ RTRIKSERYESGVIPYAKMGYWDADY +KDTDILALFRITPQPG
Sbjct:    1 MPEDVQNRTRIKSERYESGVIPYAKMGYWDADYKLKDTDILALFRITPQPG 51          
BLAST of mRNA_H-paniculata_contig47643.11817.1 vs. uniprot
Match: A0A7S4HNK2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HNK2_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 4.710e-23
Identity = 43/51 (84.31%), Postives = 46/51 (90.20%), Query Frame = 0
Query:    1 MPEDVQERTRIKSERYESGVIPYAKMGYWDADYNVKDTDILALFRITPQPG 51
            M + V ERTRIKS+RYESGVIPYAKMGYWDA Y VKDTD+LALFRITPQPG
Sbjct:    1 MSQSVSERTRIKSDRYESGVIPYAKMGYWDASYTVKDTDVLALFRITPQPG 51          
BLAST of mRNA_H-paniculata_contig47643.11817.1 vs. uniprot
Match: A0A858LFZ1_9STRA (Ribulose bisphosphate carboxylase large chain n=9 Tax=Ochrophyta TaxID=2696291 RepID=A0A858LFZ1_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 4.940e-23
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 0
Query:    1 MPEDVQERTRIKSERYESGVIPYAKMGYWDADYNVKDTDILALFRITPQPG 51
            M ++VQERTRIKSERYESGVIPYAKMGYWDADYN+K TDILALFRITPQPG
Sbjct:    1 MSKNVQERTRIKSERYESGVIPYAKMGYWDADYNIKHTDILALFRITPQPG 51          
BLAST of mRNA_H-paniculata_contig47643.11817.1 vs. uniprot
Match: B8LGQ9_9STRA (Ribulose bisphosphate carboxylase large chain n=186 Tax=root TaxID=1 RepID=B8LGQ9_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 3.350e-22
Identity = 45/51 (88.24%), Postives = 48/51 (94.12%), Query Frame = 0
Query:    1 MPEDVQERTRIKSERYESGVIPYAKMGYWDADYNVKDTDILALFRITPQPG 51
            M ++VQERTRIKSERYESGVIPYAKMGYWDADYN+  TDILALFRITPQPG
Sbjct:    1 MSKNVQERTRIKSERYESGVIPYAKMGYWDADYNIAHTDILALFRITPQPG 51          
BLAST of mRNA_H-paniculata_contig47643.11817.1 vs. uniprot
Match: A0A068LE88_9STRA (Ribulose bisphosphate carboxylase large chain (Fragment) n=7 Tax=Bacillariophyta TaxID=2836 RepID=A0A068LE88_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 7.700e-22
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0
Query:    5 VQERTRIKSERYESGVIPYAKMGYWDADYNVKDTDILALFRITPQPG 51
            V ERTRIKS+RYESGVIPYAKMGYWDA Y VKDTD+LALFRITPQPG
Sbjct:    1 VSERTRIKSDRYESGVIPYAKMGYWDASYTVKDTDVLALFRITPQPG 47          
BLAST of mRNA_H-paniculata_contig47643.11817.1 vs. uniprot
Match: A0A068LE57_9STRA (Ribulose bisphosphate carboxylase large chain (Fragment) n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A068LE57_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.530e-21
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0
Query:    5 VQERTRIKSERYESGVIPYAKMGYWDADYNVKDTDILALFRITPQPG 51
            V ERTRIKS+RYESGVIPYAKMGYWDA Y VKDTD+LALFRITPQPG
Sbjct:    1 VSERTRIKSDRYESGVIPYAKMGYWDASYAVKDTDVLALFRITPQPG 47          
BLAST of mRNA_H-paniculata_contig47643.11817.1 vs. uniprot
Match: Q8HSH1_9STRA (Ribulose bisphosphate carboxylase large chain n=106 Tax=root TaxID=1 RepID=Q8HSH1_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 2.270e-21
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 0
Query:    1 MPEDVQERTRIKSERYESGVIPYAKMGYWDADYNVKDTDILALFRITPQPG 51
            M + VQERTRIKS+RYESGVIPYAKMGYWDA YNVK TDILALFRITPQPG
Sbjct:    1 MSKSVQERTRIKSQRYESGVIPYAKMGYWDAFYNVKHTDILALFRITPQPG 51          
BLAST of mRNA_H-paniculata_contig47643.11817.1 vs. uniprot
Match: F5GW65_9STRA (Ribulose bisphosphate carboxylase large chain (Fragment) n=20 Tax=Bacillariophyta TaxID=2836 RepID=F5GW65_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 3.460e-21
Identity = 43/51 (84.31%), Postives = 46/51 (90.20%), Query Frame = 0
Query:    1 MPEDVQERTRIKSERYESGVIPYAKMGYWDADYNVKDTDILALFRITPQPG 51
            M + V ERTRIKS+RYESGVIPYAKMGYWDA Y VKDTD+LALFRITPQPG
Sbjct:    1 MSQSVSERTRIKSDRYESGVIPYAKMGYWDASYAVKDTDVLALFRITPQPG 51          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig47643.11817.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B8LGK2_9STRA2.960e-2692.16Ribulose-1,5-bisphosphate carboxylase/oxygenase la... [more]
A1BNI6_9PHAE1.530e-2596.08Ribulose bisphosphate carboxylase large chain n=1 ... [more]
RBL_ECTSI1.460e-2494.12Ribulose bisphosphate carboxylase large chain n=22... [more]
A0A7S4HNK2_9STRA4.710e-2384.31Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A858LFZ1_9STRA4.940e-2390.20Ribulose bisphosphate carboxylase large chain n=9 ... [more]
B8LGQ9_9STRA3.350e-2288.24Ribulose bisphosphate carboxylase large chain n=18... [more]
A0A068LE88_9STRA7.700e-2289.36Ribulose bisphosphate carboxylase large chain (Fra... [more]
A0A068LE57_9STRA1.530e-2189.36Ribulose bisphosphate carboxylase large chain (Fra... [more]
Q8HSH1_9STRA2.270e-2188.24Ribulose bisphosphate carboxylase large chain n=10... [more]
F5GW65_9STRA3.460e-2184.31Ribulose bisphosphate carboxylase large chain (Fra... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017443Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminalPFAMPF02788RuBisCO_large_Ncoord: 28..51
e-value: 1.4E-4
score: 22.0
IPR036422RuBisCO large subunit, N-terminal domain superfamilyGENE3D3.30.70.150coord: 11..51
e-value: 1.4E-5
score: 26.7
IPR036422RuBisCO large subunit, N-terminal domain superfamilySUPERFAMILY54966RuBisCO, large subunit, small (N-terminal) domaincoord: 12..51

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig47643contigH-paniculata_contig47643:162..314 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig47643.11817.1mRNA_H-paniculata_contig47643.11817.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig47643 162..314 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig47643.11817.1 ID=prot_H-paniculata_contig47643.11817.1|Name=mRNA_H-paniculata_contig47643.11817.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=51bp
MPEDVQERTRIKSERYESGVIPYAKMGYWDADYNVKDTDILALFRITPQP
G
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR017443RuBisCO_lsu_fd_N
IPR036422RuBisCO_lsu_N_sf