mRNA_H-paniculata_contig47643.11817.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig47643.11817.1
Unique NamemRNA_H-paniculata_contig47643.11817.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig47643.11817.1 vs. uniprot
Match: B8LGK2_9STRA (Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (Fragment) n=1 Tax=Xanthonema cf. bristolianum TaxID=449945 RepID=B8LGK2_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 2.960e-26
Identity = 47/51 (92.16%), Postives = 49/51 (96.08%), Query Frame = 1 
Query:    1 MPEDVQERTRIKSERYESGVIPYAKMGYWDADYNVKDTDILALFRITPQPG 153
            M ++VQERTRIKSERYESGVIPYAKMGYWDADYNVK TDILALFRITPQPG
Sbjct:    1 MSKNVQERTRIKSERYESGVIPYAKMGYWDADYNVKHTDILALFRITPQPG 51
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BLAST of mRNA_H-paniculata_contig47643.11817.1 vs. uniprot
Match: A1BNI6_9PHAE (Ribulose bisphosphate carboxylase large chain n=1 Tax=Lessonia tholiformis TaxID=370575 RepID=A1BNI6_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.530e-25
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 MPEDVQERTRIKSERYESGVIPYAKMGYWDADYNVKDTDILALFRITPQPG 153
            MPE+VQERTR+KSERYESGVIPYAKMGYWDADYNVKDTDILALFRITPQPG
Sbjct:    1 MPENVQERTRLKSERYESGVIPYAKMGYWDADYNVKDTDILALFRITPQPG 51
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BLAST of mRNA_H-paniculata_contig47643.11817.1 vs. uniprot
Match: RBL_ECTSI (Ribulose bisphosphate carboxylase large chain n=2255 Tax=PX clade TaxID=569578 RepID=RBL_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 1.460e-24
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 1 
Query:    1 MPEDVQERTRIKSERYESGVIPYAKMGYWDADYNVKDTDILALFRITPQPG 153
            MPEDVQ RTRIKSERYESGVIPYAKMGYWDADY +KDTDILALFRITPQPG
Sbjct:    1 MPEDVQNRTRIKSERYESGVIPYAKMGYWDADYKLKDTDILALFRITPQPG 51
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BLAST of mRNA_H-paniculata_contig47643.11817.1 vs. uniprot
Match: A0A7S4HNK2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HNK2_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 4.710e-23
Identity = 43/51 (84.31%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:    1 MPEDVQERTRIKSERYESGVIPYAKMGYWDADYNVKDTDILALFRITPQPG 153
            M + V ERTRIKS+RYESGVIPYAKMGYWDA Y VKDTD+LALFRITPQPG
Sbjct:    1 MSQSVSERTRIKSDRYESGVIPYAKMGYWDASYTVKDTDVLALFRITPQPG 51
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BLAST of mRNA_H-paniculata_contig47643.11817.1 vs. uniprot
Match: A0A858LFZ1_9STRA (Ribulose bisphosphate carboxylase large chain n=9 Tax=Ochrophyta TaxID=2696291 RepID=A0A858LFZ1_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 4.940e-23
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 1 
Query:    1 MPEDVQERTRIKSERYESGVIPYAKMGYWDADYNVKDTDILALFRITPQPG 153
            M ++VQERTRIKSERYESGVIPYAKMGYWDADYN+K TDILALFRITPQPG
Sbjct:    1 MSKNVQERTRIKSERYESGVIPYAKMGYWDADYNIKHTDILALFRITPQPG 51
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BLAST of mRNA_H-paniculata_contig47643.11817.1 vs. uniprot
Match: B8LGQ9_9STRA (Ribulose bisphosphate carboxylase large chain n=186 Tax=root TaxID=1 RepID=B8LGQ9_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 3.350e-22
Identity = 45/51 (88.24%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:    1 MPEDVQERTRIKSERYESGVIPYAKMGYWDADYNVKDTDILALFRITPQPG 153
            M ++VQERTRIKSERYESGVIPYAKMGYWDADYN+  TDILALFRITPQPG
Sbjct:    1 MSKNVQERTRIKSERYESGVIPYAKMGYWDADYNIAHTDILALFRITPQPG 51
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BLAST of mRNA_H-paniculata_contig47643.11817.1 vs. uniprot
Match: A0A068LE88_9STRA (Ribulose bisphosphate carboxylase large chain (Fragment) n=7 Tax=Bacillariophyta TaxID=2836 RepID=A0A068LE88_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 7.700e-22
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:   13 VQERTRIKSERYESGVIPYAKMGYWDADYNVKDTDILALFRITPQPG 153
            V ERTRIKS+RYESGVIPYAKMGYWDA Y VKDTD+LALFRITPQPG
Sbjct:    1 VSERTRIKSDRYESGVIPYAKMGYWDASYTVKDTDVLALFRITPQPG 47
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BLAST of mRNA_H-paniculata_contig47643.11817.1 vs. uniprot
Match: A0A068LE57_9STRA (Ribulose bisphosphate carboxylase large chain (Fragment) n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A068LE57_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.530e-21
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:   13 VQERTRIKSERYESGVIPYAKMGYWDADYNVKDTDILALFRITPQPG 153
            V ERTRIKS+RYESGVIPYAKMGYWDA Y VKDTD+LALFRITPQPG
Sbjct:    1 VSERTRIKSDRYESGVIPYAKMGYWDASYAVKDTDVLALFRITPQPG 47
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BLAST of mRNA_H-paniculata_contig47643.11817.1 vs. uniprot
Match: Q8HSH1_9STRA (Ribulose bisphosphate carboxylase large chain n=106 Tax=root TaxID=1 RepID=Q8HSH1_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 2.270e-21
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:    1 MPEDVQERTRIKSERYESGVIPYAKMGYWDADYNVKDTDILALFRITPQPG 153
            M + VQERTRIKS+RYESGVIPYAKMGYWDA YNVK TDILALFRITPQPG
Sbjct:    1 MSKSVQERTRIKSQRYESGVIPYAKMGYWDAFYNVKHTDILALFRITPQPG 51
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BLAST of mRNA_H-paniculata_contig47643.11817.1 vs. uniprot
Match: F5GW65_9STRA (Ribulose bisphosphate carboxylase large chain (Fragment) n=20 Tax=Bacillariophyta TaxID=2836 RepID=F5GW65_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 3.460e-21
Identity = 43/51 (84.31%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:    1 MPEDVQERTRIKSERYESGVIPYAKMGYWDADYNVKDTDILALFRITPQPG 153
            M + V ERTRIKS+RYESGVIPYAKMGYWDA Y VKDTD+LALFRITPQPG
Sbjct:    1 MSQSVSERTRIKSDRYESGVIPYAKMGYWDASYAVKDTDVLALFRITPQPG 51
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig47643.11817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B8LGK2_9STRA2.960e-2692.16Ribulose-1,5-bisphosphate carboxylase/oxygenase la... [more]
A1BNI6_9PHAE1.530e-2596.08Ribulose bisphosphate carboxylase large chain n=1 ... [more]
RBL_ECTSI1.460e-2494.12Ribulose bisphosphate carboxylase large chain n=22... [more]
A0A7S4HNK2_9STRA4.710e-2384.31Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A858LFZ1_9STRA4.940e-2390.20Ribulose bisphosphate carboxylase large chain n=9 ... [more]
B8LGQ9_9STRA3.350e-2288.24Ribulose bisphosphate carboxylase large chain n=18... [more]
A0A068LE88_9STRA7.700e-2289.36Ribulose bisphosphate carboxylase large chain (Fra... [more]
A0A068LE57_9STRA1.530e-2189.36Ribulose bisphosphate carboxylase large chain (Fra... [more]
Q8HSH1_9STRA2.270e-2188.24Ribulose bisphosphate carboxylase large chain n=10... [more]
F5GW65_9STRA3.460e-2184.31Ribulose bisphosphate carboxylase large chain (Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig47643contigH-paniculata_contig47643:162..314 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.6
Seed ortholog evalue8.7e-22
Seed eggNOG ortholog2880.D1J7D6
Preferred namerbcL
KEGG rclassRC00040,RC00172,RC00253,RC00367,RC00859
KEGG koko:K01601,ko:K01963
KEGG ReactionR00024,R00742,R03140,R04386
KEGG Pathwayko00061,ko00620,ko00630,ko00640,ko00710,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00630,map00640,map00710,map00720,map01100,map01110,map01120,map01130,map01200,map01212
KEGG ModuleM00082,M00165,M00166,M00376,M00532
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.ribulose-bisphosphate carboxylase activity
EggNOG OGs2QTI9@2759,COG1850@1
EC2.1.3.15,4.1.1.39,6.4.1.2
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size153
Cds size153
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930414.0278077-CDS-H-paniculata_contig47643:161..3141622930414.0278077-CDS-H-paniculata_contig47643:161..314Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47643 162..314 -
1691481281.1337094-CDS-H-paniculata_contig47643:161..3141691481281.1337094-CDS-H-paniculata_contig47643:161..314Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47643 162..314 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig47643.11817.1prot_H-paniculata_contig47643.11817.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig47643 162..314 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig47643.11817.1

>prot_H-paniculata_contig47643.11817.1 ID=prot_H-paniculata_contig47643.11817.1|Name=mRNA_H-paniculata_contig47643.11817.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=51bp
MPEDVQERTRIKSERYESGVIPYAKMGYWDADYNVKDTDILALFRITPQP
G
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mRNA from alignment at H-paniculata_contig47643:162..314-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig47643.11817.1 ID=mRNA_H-paniculata_contig47643.11817.1|Name=mRNA_H-paniculata_contig47643.11817.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=153bp|location=Sequence derived from alignment at H-paniculata_contig47643:162..314- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTGAAGATGTCCAAGAAAGGACCAGAATTAAAAGTGAACGTTATGA
ATCTGGTGTTATACCATATGCCAAAATGGGGTATTGGGATGCAGATTATA
ATGTTAAAGACACTGACATTCTAGCTCTGTTTCGTATCACTCCACAACCA
GGT
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Coding sequence (CDS) from alignment at H-paniculata_contig47643:162..314-

>mRNA_H-paniculata_contig47643.11817.1 ID=mRNA_H-paniculata_contig47643.11817.1|Name=mRNA_H-paniculata_contig47643.11817.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=306bp|location=Sequence derived from alignment at H-paniculata_contig47643:162..314- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTGAAGATGTCCAAGAAAGGACCAGAATTAAAAGTGAACGTTATGA
ATCTGGTGTTATACCATATGCCAAAATGGGGTATTGGGATGCAGATTATA
ATGTTAAAGACACTGACATTCTAGCTCTGTTTCGTATCACTCCACAACCA
GGTATGCCTGAAGATGTCCAAGAAAGGACCAGAATTAAAAGTGAACGTTA
TGAATCTGGTGTTATACCATATGCCAAAATGGGGTATTGGGATGCAGATT
ATAATGTTAAAGACACTGACATTCTAGCTCTGTTTCGTATCACTCCACAA
CCAGGT
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