mRNA_H-paniculata_contig4764.11816.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4764.11816.1
Unique NamemRNA_H-paniculata_contig4764.11816.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4764.11816.1 vs. uniprot
Match: D8LL49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL49_ECTSI)

HSP 1 Score: 359 bits (922), Expect = 1.010e-116
Identity = 204/324 (62.96%), Postives = 237/324 (73.15%), Query Frame = 3 
Query:   30 MAMAERAAYVLGFSVALGAILGGVNAFVPSMSLSALQRLDSPIRSASAETWTSVPVQSRSRTAASRRAQGAGISGVLSGGR----FCERQGSTDALKAQMTDEEMAVDQALIARVAREVEAESGVDLEQLINPSKVINLERDLTKLRVALEAGIGNSSE-IEEDIKKKELTLSVEKRSIMRGWLKNIFVGQAVITTVLGGLMAYDAVPFFEDIDLSVRVLGFWFIWLFTVPSLRARKPGAEEKVALNVAFIATPLVSFAMPFITKDPVPIYWANIAILSACYGYGFTIGRPDDGGASSEQNQPKWLKFIYKSLDFGSGQERGAR 986
            M M  R + VLG   A+ A L G +AFVP     A  R             ++V V S S    SRR    G SGV    R      +++G  DAL AQMTDEEMA+DQALI RV +EVEAESGV+L+QLINP+KVINLERDL KLR ALE   G   E IEE+I KKE TL  EKR  M+GWLK +FVGQAVITT+LGGLMA D VPFF  +D+S++VLGFWF+WLFTVPSLRARKPGA EKVAL++AF+ATP+VSFAMPFITK+PVPIYWANIA L ACYGYGFT+G+PDDG   + ++QPKWLKFI+KSLDFGSGQERG R
Sbjct:   20 MKMKSRTSLVLGSCAAIAA-LRGADAFVPPTGGFATARS------------SAVHVSSTS----SRR----GCSGVERSARPRRTGRQQEGQGDALMAQMTDEEMALDQALIQRVTQEVEAESGVELDQLINPAKVINLERDLVKLRAALEDEPGTDREAIEEEIAKKESTLVKEKRMYMQGWLKKVFVGQAVITTILGGLMASDQVPFFPHVDISIQVLGFWFVWLFTVPSLRARKPGASEKVALDIAFLATPVVSFAMPFITKEPVPIYWANIATLVACYGYGFTVGKPDDGEGGASKSQPKWLKFIFKSLDFGSGQERGVR 322
[Close]
BLAST of mRNA_H-paniculata_contig4764.11816.1 vs. uniprot
Match: A0A6H5JI21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI21_9PHAE)

HSP 1 Score: 338 bits (867), Expect = 1.410e-108
Identity = 164/224 (73.21%), Postives = 192/224 (85.71%), Query Frame = 3 
Query:  279 ERQGSTDALKAQMTDEEMAVDQALIARVAREVEAESGVDLEQLINPSKVINLERDLTKLRVALEAGIGNSSE-IEEDIKKKELTLSVEKRSIMRGWLKNIFVGQAVITTVLGGLMAYDAVPFFEDIDLSVRVLGFWFIWLFTVPSLRARKPGAEEKVALNVAFIATPLVSFAMPFITKDPVPIYWANIAILSACYGYGFTIGRPDDGGASSEQNQPKWLKFIYK 947
            ++QG  D L AQMTDEEMA+DQALI RV  EVEAESGV+L+QLINP+KVINLERDL KLR ALE G GN  + IEE+I KKE TL  EKR  M+GWLK +FVGQAVITT+LGGLMA D VPFF  +D+S++VLGFWF+WLFTVPSLRARKPGA EKVAL++AF+ATP+VSFAMPF+TK+PVPIYWANIA L ACYGYGFT+G+PDDG   + ++QPKWLKFI+K
Sbjct:   90 QQQGQGDVLMAQMTDEEMALDQALIQRVTEEVEAESGVELDQLINPAKVINLERDLVKLRAALEDGPGNDRKAIEEEIAKKESTLVKEKRMYMQGWLKKVFVGQAVITTILGGLMASDQVPFFPHVDISIQVLGFWFVWLFTVPSLRARKPGASEKVALDIAFLATPVVSFAMPFVTKEPVPIYWANIATLVACYGYGFTVGKPDDGEGGASKSQPKWLKFIFK 313
[Close]
BLAST of mRNA_H-paniculata_contig4764.11816.1 vs. uniprot
Match: A0A835YV04_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV04_9STRA)

HSP 1 Score: 273 bits (699), Expect = 2.730e-84
Identity = 139/223 (62.33%), Postives = 169/223 (75.78%), Query Frame = 3 
Query:  327 EMAVDQALIARVAREVEAESGVDLEQLINPSKVINLERDLTKLRVALEAGIGNS-SEIEEDIKKKELTLSVEKRSIMRGWLKNIFVGQAVITTVLGGLMAYDAVPFFEDIDLSVRVLGFWFIWLFTVPSLRARKP-GAEEKVALNVAFIATPLVSFAMPFITKDPVPIYWANIAILSACYGYGFTIGRPDDGGASSEQNQPKWLKFIYKSLDFGSGQERGARR 989
            E A DQALIARVA EVE ESGV L+QLINPSKVINLERDL KLR  LE   G+S SE+ + I  KE  L+ EKR++M+ WLK IFVGQA ++ ++ G M YD VP FE +DLS+RVLGFW IWLF +PSLRARKP    EK ALN+AF+A+PLVS A+P ITKDPV IYWAN+A+ +A Y YGF  G   +     E  QP+W++FI+K+LDFGSG+ERGAR+
Sbjct:   62 EAAADQALIARVAAEVERESGVALDQLINPSKVINLERDLVKLRATLETATGDSASELRKTIDGKEAKLATEKRAVMQDWLKQIFVGQAALSVIIAGAMVYDRVPGFEHVDLSIRVLGFWVIWLFAIPSLRARKPTNPAEKTALNIAFVASPLVSLALPAITKDPVSIYWANLAVCAASYVYGFASGGQSE---EDEAKQPQWVRFIFKALDFGSGRERGARK 281
[Close]
BLAST of mRNA_H-paniculata_contig4764.11816.1 vs. uniprot
Match: A0A7S2UZ01_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZ01_9STRA)

HSP 1 Score: 253 bits (645), Expect = 4.790e-76
Identity = 128/223 (57.40%), Postives = 164/223 (73.54%), Query Frame = 3 
Query:  339 DQALIARVAREVEAESGVDLEQLINPSKVINLERDLTKLRVALEAGIGNS--SEIEEDIKKKELTLSVEKRSIMRGWLKNIFVGQAVITTVLGGLMAYDAVPFFEDIDLSVRVLGFWFIWLFTVPSLRARKPGAEEKVALNVAFIATPLVSFAMPFITKDPVPIYWANIAILSACYGYGFTIGRPDDGGASSE----QNQPKWLKFIYKSLDFGSGQERGARR 989
            D AL+AR+A+EVE  +GV+L+QL+NP KV+NLERDL KL   LE    ++   EI +++++K   L+VEKR +++GWLKN+FVGQAVI+T   GLM YDAVPF + +DLSVRVLGFW IWLFTVPSLRARKP A+EK ALN+AF ATPL + A+PF TKDPV IYWAN+A+L   Y YGFT+G               N P +LK   ++LD+GSG+ERG R+
Sbjct:   75 DAALVARLAKEVEEANGVELDQLLNPGKVVNLERDLLKLSKELEICQDSTRIEEINKEMEQKTKKLNVEKRMVVQGWLKNLFVGQAVISTFAAGLMVYDAVPFVDHLDLSVRVLGFWVIWLFTVPSLRARKPAADEKTALNIAFGATPLTNLALPFFTKDPVTIYWANMAVLGLSYAYGFTLGSXXXXXXXXXXXXXSNLPDFLKAAIRALDYGSGRERGLRK 297
[Close]
BLAST of mRNA_H-paniculata_contig4764.11816.1 vs. uniprot
Match: A0A6S9FX91_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9FX91_HETAK)

HSP 1 Score: 242 bits (618), Expect = 3.150e-72
Identity = 123/233 (52.79%), Postives = 168/233 (72.10%), Query Frame = 3 
Query:  300 ALKAQMTDEEMAVDQALIA-RVAREVEAESGVDLEQLINPSKVINLERDLTKLRVALE--AGIGNSSEIEEDIKKKELTLSVEKRSIMRGWLKNIFVGQAVITTVLGGLMAYDAVPFFEDIDLSVRVLGFWFIWLFTVPSLRARKPGAEEKVALNVAFIATPLVSFAMPFITKDPVPIYWANIAILSACYGYGFTIGRPDDGGASSEQNQPKWLKFIYKSLDFGSGQERGARR 989
            AL+A  T+E    + ALI  R+  EV   SGV+LEQL++P+KV+NLER++ +L+  LE  +    ++EIEE+I  K+   + EKR  ++GWLK +FVGQ+V++ V+ G ++Y  VPF ED+D+SVRVLGFWFIWLFT+PSLRARKP A EK ALN AF  TPL +   PF+TKDPV IYWAN+ + +ACYGYG  + +P D  A ++   P W+K   K+LD+GSG+ERGAR+
Sbjct:   53 ALRAASTEELTPEEDALIIKRLEDEVMEISGVELEQLLSPAKVVNLEREIFQLKKELETTSNQARAAEIEEEIATKQTKANGEKRMYVQGWLKTLFVGQSVLSVVVAGFLSYGIVPFVEDVDISVRVLGFWFIWLFTIPSLRARKPAAGEKEALNWAFGLTPLTNLLAPFVTKDPVLIYWANLVVTAACYGYGLLLWKPSDAPAEADTT-PGWVKDALKALDYGSGRERGARK 284
[Close]
BLAST of mRNA_H-paniculata_contig4764.11816.1 vs. uniprot
Match: W7TZ94_9STRA (Resistance to phytophthora 1 protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TZ94_9STRA)

HSP 1 Score: 221 bits (564), Expect = 4.120e-64
Identity = 109/227 (48.02%), Postives = 152/227 (66.96%), Query Frame = 3 
Query:  339 DQALIARVAREVEAESGVDLEQLINPSKVINLERDLTKLR----VALEAGIGNSSEIEEDIKKKELTLSVEKRSIMRGWLKNIFVGQAVITTVLGGLMAYDAVPFFEDIDLSVRVLGFWFIWLFTVPSLRARKPGAEEKVALNVAFIATPLVSFAMPFITKDPVPIYWANIAILSACYGYGFTI------GRPDDGGASSEQNQPKWLKFIYKSLDFGSGQERGARR 989
            D  ++ R+  +V  E+GVDL+QL+NPSKV+NLE +L  LR     A + G    +++E  I+KKE  L+ EKR +MRGWLKN+F+GQ+++  VL G++AYDA+P FE + L +R   FW  W+FT+PSLRAR+PGA EK AL+VAF+ TP+VS  MPF+T+D   I+WAN       YGY F        G  +DGG+  ++  P  LK   K+LD+GSG+ERG R+
Sbjct:   70 DDPMVQRIREDVRRETGVDLDQLLNPSKVVNLEFELINLRNERAAATQGGGKALAKLEAQIEKKETQLATEKRLVMRGWLKNLFLGQSLLAVVLSGVVAYDALPGFEHLPLPIRAFAFWSFWMFTIPSLRARRPGAVEKKALDVAFLLTPVVSLGMPFLTQDVPTIWWANAVATGVSYGYAFAFQGKGERGEGEDGGSEEDETLPGPLKAALKALDWGSGRERGVRK 296
[Close]
BLAST of mRNA_H-paniculata_contig4764.11816.1 vs. uniprot
Match: A0A7S2FLN3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FLN3_9STRA)

HSP 1 Score: 217 bits (553), Expect = 3.760e-62
Identity = 113/234 (48.29%), Postives = 157/234 (67.09%), Query Frame = 3 
Query:  327 EMAVDQALIARVAREVEAESG------VDLEQLINPSKVINLERDLTKLRVALEAGIGNSS---EIEEDIKKKELTLSVEKRSIMRGWLKNIFVGQAVITTVLGGLMAYDAVPFFEDIDLSVRVLGFWFIWLFTVPSLRARKPGA------EEKVALNVAFIATPLVSFAMPFITKDPVPIYWANIAILSACYGYGFTIGRPDDGGASSEQNQPKWLKFIYKSLDFGSGQERGA 983
            E+  D  L+ R+  E    +G      V L QL+NPSKV+NLE+D+  LR +L A   +S+   EI + I KKE   S E R +MR WLK +FVGQ+V++  + GL++YDA+PF  ++DL+VRVLGFW IWLFT+PSLR+RKPG        EK AL++AF+ TPL +   PF TK+P  I+W N+ +LSACY Y FT+   +  GAS++ + PK +KF+  +LDFG+G+ERGA
Sbjct:   60 EIMSDDPLVLRLEAECAQLNGANWNKDVGLTQLLNPSKVVNLEKDIDALRASLAAPDLDSAVREEIIDQIAKKEFKKSNEMRGVMRDWLKAVFVGQSVLSVAICGLVSYDALPFLPNLDLAVRVLGFWGIWLFTIPSLRSRKPGGVWGMSNAEKNALDIAFLVTPLANLLAPFATKNPPDIFWLNMVVLSACYAYSFTVSPQESSGASADASLPKPIKFVLTALDFGAGRERGA 293
[Close]
BLAST of mRNA_H-paniculata_contig4764.11816.1 vs. uniprot
Match: A0A448Z3P0_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z3P0_9STRA)

HSP 1 Score: 206 bits (525), Expect = 7.650e-58
Identity = 111/237 (46.84%), Postives = 155/237 (65.40%), Query Frame = 3 
Query:  315 MTDEE--MAVDQALIARVAREVEAESGVDLEQLINPSKVINLERDLTKLRVALEAGIGNSS--EIEEDIKKKELTLSVEKRSIMRGWLKNIFVGQAVITTVLGGLMAYDAVPFF--------EDIDLSVRVLGFWFIWLFTVPSLRARKPGAEEKVALNVAFIATPLVSFAMPFITKDPVPIYWANIAILSACYGYGFTIGRPDDGGASSEQNQPKWLKFIYKSLDFGSGQERGARR 989
            M+D E  M  D   +  +   +  + GV L+ L+NP+KV+NLER+L +LR  LE     S+   I + I+KKE  L++E+RS+ RGWLKNIFVGQAVI+  +  +MA +    F          +D+S++VLG+WF WLF VPSLR+R+P   EK AL++AF+ TPLVS A P +TKD   I++AN  I++  YG+ +     DD    S+ N+P WLKF+YKSLDFGSG+ERGAR+
Sbjct:  106 MSDPEQPMTSDDPFVQNIDAGIREDFGVGLDDLLNPAKVVNLERELYQLREELEGTTDESTIQSITKSIEKKEGKLAIERRSVFRGWLKNIFVGQAVISFGISYVMATNPSSLFGGFDWYYYNSMDISIQVLGYWFWWLFIVPSLRSRRPRGFEKEALDIAFLGTPLVSLAAPVLTKDTGLIWFANFVIVAGAYGFAYLTDGDDDSD-DSDSNKPAWLKFVYKSLDFGSGRERGARQ 341
[Close]
BLAST of mRNA_H-paniculata_contig4764.11816.1 vs. uniprot
Match: A0A7S0K9N2_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0K9N2_9STRA)

HSP 1 Score: 204 bits (518), Expect = 5.690e-57
Identity = 115/253 (45.45%), Postives = 156/253 (61.66%), Query Frame = 3 
Query:  318 TDEEMAVDQALIARVAREVEAESGVDLEQLINPSKVINLERDLTKLRVALEA------------------GIGNSSEIE---EDIKKKELTLSVEKRSIMRGWLKNIFVGQAVITTVLGGLMAYDAVPFFE--------DIDLSVRVLGFWFIWLFTVPSLRARKPGAEEKVALNVAFIATPLVSFAMPFITKDPVPIYWANIAILSACYGYGFTIGRPDDGGASSEQNQPKWLKFIYKSLDFGSGQERGARR 989
            +DEE+  D   + R+  E+  + GV L+ L+NP+ V+NLERDL  LR +L                    G GNS EI+   + I+KKE  L VE+RS+ RGWLKN+F+ QAV++  +  +MA D    F          ++L ++VLGFW   LF VPSLR+R+P   EK AL++AFI TPL+S   P  TKD + I+WAN A+ +A YGY +TIG  +D   S + N P+ LKFIYKSLDFGSG+ERGAR+
Sbjct:   78 SDEELTSDDPFVQRINDEIMRDMGVPLDGLLNPATVVNLERDLYNLRSSLATLTGLGEIDVGGLTTQECDGGGNSDEIDALRQTIEKKEKKLVVERRSVFRGWLKNVFLVQAVLSLGVSFVMATDPAILFGGFGWFYSYQMELPIQVLGFWXXXLFIVPSLRSRRPSGPEKKALDLAFIGTPLISLVAPVATKDALIIWWANFAVTAASYGYAYTIGDSEDD-ESDDSNTPEALKFIYKSLDFGSGRERGARK 329
[Close]
BLAST of mRNA_H-paniculata_contig4764.11816.1 vs. uniprot
Match: A0A7S1GGE3_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GGE3_CYCTE)

HSP 1 Score: 199 bits (507), Expect = 2.290e-56
Identity = 109/253 (43.08%), Postives = 155/253 (61.26%), Query Frame = 3 
Query:  321 DEEMAVDQALIARVAREVEAESGVDLEQLINPSKVINLERDLTKLRVALEAGIGN---------------------SSEIEEDIKKKELTLSVEKRSIMRGWLKNIFVGQAVITTVLGGLMAYDAVPFFE--------DIDLSVRVLGFWFIWLFTVPSLRARKPGAEEKVALNVAFIATPLVSFAMPFITKDPVPIYWANIAILSACYGYGF-TIGRPDDGGASSEQNQPKWLKFIYKSLDFGSGQERGARR 989
            D E+  D   +  +   ++AE GV L++L+NP+KV+NLERDL  LR  L    G                      + EI + I KKE  +++E+RS+ RGWLKN+F+ QAV++ VL  +MA +    F         ++D+S++VLGFW   LF VPSLR+R+P   EK AL++AF+ TPL+S   P +TKD   I+ AN+ +++A Y + F T G  DD  + S  NQP+WLKFIYKSLDFG+G+ERGAR+
Sbjct:    1 DVELTSDDPFVKSIDASIQAEVGVSLDELLNPAKVVNLERDLFNLRTELATLTGKVDLDIAGLPTDECDGGGGGEAADEIRQKIAKKEKDVALERRSVFRGWLKNVFLAQAVLSFVLSWIMASNPAQLFGGFDWFYSYNMDVSIKVLGFWXXXLFVVPSLRSRRPKGAEKKALDIAFLGTPLISIVAPALTKDTELIWGANLLVVAASYAFAFLTDGEDDDDDSGS--NQPEWLKFIYKSLDFGTGRERGARQ 251
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4764.11816.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL49_ECTSI1.010e-11662.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JI21_9PHAE1.410e-10873.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YV04_9STRA2.730e-8462.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2UZ01_9STRA4.790e-7657.40Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6S9FX91_HETAK3.150e-7252.79Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7TZ94_9STRA4.120e-6448.02Resistance to phytophthora 1 protein n=3 Tax=Monod... [more]
A0A7S2FLN3_9STRA3.760e-6248.29Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A448Z3P0_9STRA7.650e-5846.84Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S0K9N2_9STRA5.690e-5745.45Hypothetical protein n=1 Tax=Leptocylindrus aporus... [more]
A0A7S1GGE3_CYCTE2.290e-5643.08Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4764contigH-paniculata_contig4764:3779..9967 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score364.4
Seed ortholog evalue5.8e-98
Seed eggNOG ortholog2880.D8LL49
Hectar predicted targeting categorychloroplast
EggNOG OGs2BZA5@1,2QSK6@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-25_000030.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons8
Model size1774
Cds size1008
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4764.11816.1prot_H-paniculata_contig4764.11816.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4764 3805..9227 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930413.815567-UTR-H-paniculata_contig4764:3778..38041622930413.815567-UTR-H-paniculata_contig4764:3778..3804Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4764 3779..3804 +
1691481281.0226343-UTR-H-paniculata_contig4764:3778..38041691481281.0226343-UTR-H-paniculata_contig4764:3778..3804Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4764 3779..3804 +
1622930413.9791567-UTR-H-paniculata_contig4764:9227..99671622930413.9791567-UTR-H-paniculata_contig4764:9227..9967Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4764 9228..9967 +
1691481281.1244617-UTR-H-paniculata_contig4764:9227..99671691481281.1244617-UTR-H-paniculata_contig4764:9227..9967Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4764 9228..9967 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930413.8357959-CDS-H-paniculata_contig4764:3804..38651622930413.8357959-CDS-H-paniculata_contig4764:3804..3865Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4764 3805..3865 +
1691481281.0348964-CDS-H-paniculata_contig4764:3804..38651691481281.0348964-CDS-H-paniculata_contig4764:3804..3865Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4764 3805..3865 +
1622930413.8603308-CDS-H-paniculata_contig4764:4850..51071622930413.8603308-CDS-H-paniculata_contig4764:4850..5107Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4764 4851..5107 +
1691481281.0458655-CDS-H-paniculata_contig4764:4850..51071691481281.0458655-CDS-H-paniculata_contig4764:4850..5107Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4764 4851..5107 +
1622930413.8759966-CDS-H-paniculata_contig4764:5934..60121622930413.8759966-CDS-H-paniculata_contig4764:5934..6012Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4764 5935..6012 +
1691481281.0607603-CDS-H-paniculata_contig4764:5934..60121691481281.0607603-CDS-H-paniculata_contig4764:5934..6012Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4764 5935..6012 +
1622930413.8903232-CDS-H-paniculata_contig4764:6640..67211622930413.8903232-CDS-H-paniculata_contig4764:6640..6721Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4764 6641..6721 +
1691481281.0729609-CDS-H-paniculata_contig4764:6640..67211691481281.0729609-CDS-H-paniculata_contig4764:6640..6721Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4764 6641..6721 +
1622930413.9098778-CDS-H-paniculata_contig4764:7541..76581622930413.9098778-CDS-H-paniculata_contig4764:7541..7658Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4764 7542..7658 +
1691481281.0828252-CDS-H-paniculata_contig4764:7541..76581691481281.0828252-CDS-H-paniculata_contig4764:7541..7658Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4764 7542..7658 +
1622930413.9299717-CDS-H-paniculata_contig4764:7946..81351622930413.9299717-CDS-H-paniculata_contig4764:7946..8135Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4764 7947..8135 +
1691481281.092917-CDS-H-paniculata_contig4764:7946..81351691481281.092917-CDS-H-paniculata_contig4764:7946..8135Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4764 7947..8135 +
1622930413.947398-CDS-H-paniculata_contig4764:8545..86831622930413.947398-CDS-H-paniculata_contig4764:8545..8683Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4764 8546..8683 +
1691481281.1027758-CDS-H-paniculata_contig4764:8545..86831691481281.1027758-CDS-H-paniculata_contig4764:8545..8683Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4764 8546..8683 +
1622930413.9645686-CDS-H-paniculata_contig4764:9140..92271622930413.9645686-CDS-H-paniculata_contig4764:9140..9227Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4764 9141..9227 +
1691481281.1129243-CDS-H-paniculata_contig4764:9140..92271691481281.1129243-CDS-H-paniculata_contig4764:9140..9227Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4764 9141..9227 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4764.11816.1

>prot_H-paniculata_contig4764.11816.1 ID=prot_H-paniculata_contig4764.11816.1|Name=mRNA_H-paniculata_contig4764.11816.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=336bp
MMAMAERAAYVLGFSVALGAILGGVNAFVPSMSLSALQRLDSPIRSASAE
TWTSVPVQSRSRTAASRRAQGAGISGVLSGGRFCERQGSTDALKAQMTDE
EMAVDQALIARVAREVEAESGVDLEQLINPSKVINLERDLTKLRVALEAG
IGNSSEIEEDIKKKELTLSVEKRSIMRGWLKNIFVGQAVITTVLGGLMAY
DAVPFFEDIDLSVRVLGFWFIWLFTVPSLRARKPGAEEKVALNVAFIATP
LVSFAMPFITKDPVPIYWANIAILSACYGYGFTIGRPDDGGASSEQNQPK
WLKFIYKSLDFGSGQERGARRKDDDSASVDESEEE*
back to top

mRNA from alignment at H-paniculata_contig4764:3779..9967+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4764.11816.1 ID=mRNA_H-paniculata_contig4764.11816.1|Name=mRNA_H-paniculata_contig4764.11816.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6189bp|location=Sequence derived from alignment at H-paniculata_contig4764:3779..9967+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACTTCTCCGCCGGCGGGTGTCTGTAATGATGGCTATGGCCGAAAGAGCG
GCGTATGTACTTGGTTTCTCTGTGGCTCTCGGGGCAAGTAAGTAATCAAA
TGCACGTTCAAAGCGACAGGTCTAATACGAAACGGTCAAAATCACATTTA
ACATGTGTTCAATTGCTCATGATTCATGTTGTGTGATGAGATGGAGACAA
TGTACAAACACAGGAGCACTTGGTACGGTCCGTGTGTTCACGGTCAGCTC
TACACATTGCACATGAAGTGTGGGATACAGTCCGTAGTACACCCTAGTTA
GCGCAATTACAAATATATTATCATGTGGGTTATACTTCGAAACAGGCAGT
TTGGAGGTTATCTAGTAGCAACAATTAGCAGCAGACAGGGAGTTATCGTT
AGGACTGCAGGACTATTGACTGCGCTGACTGTGTACTTGAATCTTGATTT
ACTTTGAGACATGGCGTCCGCGGTCCAAATACTGTGGCTCTGAGGTGGAT
GATCACTTCCGCAGACGGTTTCGGTTACCTTTCCCTTAACTCTCTGAAAG
TATGGCGCGCCTGTAGATGTTTTGTGAATCCGACTCGACGGTGCCTGTGG
CCATGTTCGTGTCTGCTCTGTCTATTCAACTATGTCTCGCGTTTTAGATT
CAACATACTGGCTGAGCATAAAATGGATTTTGTACAAAACAAGTGTGAGT
ACCAGTAAATCATCGTATTTAGTAAAAACGGTTGCAGTCAAGGATATTTA
CACAGAAAAACCCTTGAGTGATCATTCATAATTGGTAGCTGGTACTTTTG
CCTGACGTAGAACACAATCGGTGGTGTTCGAATACTAGATGCCATTCGCA
GTGCAGGTCGTAGGGCGTGAGCATGTGAGCATGCACTTAGGGCTAAGTTT
AGTCGTAAATACGTAGGAATATGCAGCAGAAAGTCCGAGTCTACCGTGTT
GGAGAAGAATCGTGCGTTAAATATCCTTGTCTTGTTCTTATTCAGTGCCT
CTGTCTTTGAAATAAAAACTATCCATTTCGCACTACCCCTCGATGCGTGC
TACGATACGACGCGAATTTCAGTTCTGGGTGGAGTCAATGCCTTTGTGCC
CTCTATGTCGCTTAGCGCTCTGCAGCGTCTTGATTCGCCAATAAGAAGTG
CCAGTGCCGAAACTTGGACAAGTGTACCAGTCCAATCGAGGAGTCGCACG
GCGGCATCCCGTAGAGCTCAAGGTGCTGGTATTTCCGGCGTATTGAGTGG
TGGTAGATTCTGTGAGAGACAGGGGTCAACGGACGCGTTGAAAGCGCAGA
TGACGGACGAAGAAATGGCTGTTGATCAGGCAAGTTGTGTATGAAAACGT
GAACTACTAGAAGCAGCTGTGCTGGGGGTGTGGAGTTTGATACTCGGTGC
AGGATCGGGGTGATTGGAGTATTATAGGAGATGTAATTTGCGTTAATCTC
ACTCCTCATCCTACCAAAACTCACGGGGACGCGGTAATAGACCTGGTGAT
TTATTTAAGTTATGTTGGTCGAGGATATGTTAGCTCTCGCCAGATACTGA
TCCGCTAAAAACAAGGAATCATTATGTCTGAAAAATTACGTGTAACTCGG
TGCTGATTTGCAGCAGCAGCAGCACCGTCCCACGTAATCGCGCGCCACAG
TTGGATTCTCTCTGCGACTGATGAAGTGATACTGCAGCACTGTATGTCAT
GCATCATGAGAAAATTCTAGGCCTCTGAAAGTGTCATGCCACGTGCCTGC
GTTGTCTCCGACAGAAACGTTTCGAGCGCACTAGTCTCGTGCTCAGTTCT
TTATGTCAGTTGTGCAATCAGGATTCGCTATGTACAGCCAGCATGTACAG
GCACTGCTAGTACGAGAGATGTATGTGAGTCCAGCTGGTCCCTATATCTG
TTGCAACTTACAATTCTCTGGATCAAACCCTCGAACTGGTTTCGGAAGCA
TACAACACCAACCCTCACCAAGAAGAATCACAGTCAGTGAATAGTATCCA
TTGAAAGGTAACAGCGAAATCCACTCATCCCACACGAAGTCACTGCATCC
ACGTTCGTTACTTAATTGATACTCCCAACAATATTAATTTATATCCGAAG
ATAATGTGCCGGATCTGCGAGTGTATATCGCCCAACTGATTCAATGTCTT
TTGCAGGCTTTGATAGCGCGAGTGGCACGAGAGGTGGAGGCGGAATCTGG
CGTGGATTTGGAGCAGCTCATTAACCCTTCCAAGGTACATACGACAACAC
CTTATATGTCAAATAGCAGCAACAATCCATACCTTGTTCTCAAGCTGGCG
TGTACGGCTGACGGTGTCGACTATCTCTCATGACTTCATCAGACTCACGG
CCATTTTTGTCATGTTCATCACTTCTGCAGCAGCTTGTCGTGAGGGCTTG
GCCTTAATTTTGAATCGTTCATTTGGCCACTTGACTCTCTTGTCAGCTTA
TTGGTTGTGTTTTGCATCGATATCTAGAGTGCTCACTTCTCTTAATCGAG
CTTTCTGTGCCACAGCGACGCGATTCACGGTGTATCCATCGCCCGAATTA
CTTGATTTTTATTTTTGTATTATAGGCTGCTTTGGCACTTGACCTCTTCT
ATAGCGACACACATTTTTCAGGACCAGCCGTAGTCCATATCTGTTTCGAC
TTCTCGTGGGCAATCTTCTACGTAGTTTGTATCTGATGAATACCAGAATT
TGAATTATCAAAGGAAGCTACTCCACTCGCACTCGTTTAGCGGATGCATT
ATTGGCGTCAAGTTTCACCAGCAATCAGTTGTTTAGGCCCTTGAACGCAA
ATATGTGGTATTAACCCTAATGTAAAGTGGATGGATTTTGGGGTGTATGG
ATGAGGTGTCAGGTGATTAACCTAGAGCGGGATCTGACAAAGCTACGAGT
TGCTCTGGAGGCTGGAATTGGCAACAGCAGTGAGATCGAAGAGGTACGTG
TCTGACCGGTGCTGTGGCCTGCTCAACGTTCAGCTTGTATGCCCTTGAGG
GTGTGATTTTTACCTTCCTAGTGTTTTGGTAAATGGAGGGATGTCGTTAT
CAACTTCACAATTTAGATGCAGGTCGATCCAGGTCAATGAAGGTCGTCGC
GAATTTCGGAACGTGAGACTTTTGAAAACTTGATGGAAGCATAGCTGAAA
ATCCTTAACGCCTTCATGAAATTTTTTATTCTAGCGCACGGGCGCACCTA
CGCTTATGTTCCAAATTTCGAGCATGAACTATGGTTGAATACAAGTTGAG
GGTTCCATCCACCCGATGGTAAAACTCTGATGCATGCATCACACATCATC
GGGCGGGTGATCTCTAGTGGCGAGTATGTACGAGGTGTACATGTTTGTCC
ACGGCTGGCCGTATCCGACGCATCACTCGGACACGTTTGTCCTCAAGTGA
TACGTACAAGCTACGTGAAGGTTTATACTCGTCCAAACTGATCCTTACCC
CAGGCATCGTTCGCACGTACTAGTCCATCACTTATGCGTAGGGTATAGAG
TGCACGGGTCATGAGCCTTCGGGCGTGTAGAAGGTTCCATGAACATGTTA
AAAGGTGTTTTTTTCTGAAAATGAAACCTTCATCCGAGGTGTGGTCAACT
TTATGTACCTAATGGTAGTCACGAGAACGATCGTTCATAGGTGAAGAATG
CAGTCACTGAAAGCTCGCTTTTTGGAGCACGCTACGTAAAGACAATGTTG
TTCTGTCTCTAGACTGTATTGGTTTGATACAGCTTCTTGCGCTTGTCTGT
GACGTGATTGCAGGACATCAAGAAGAAGGAATTGACATTGTCAGTGGAAA
AACGATCAATCATGAGGGGCTGGCTCAAAAACATCTTCGTTGGACAGGCC
GTCATTACCACCGTATTGGGGGGACTCATGGTACGCTGGCGTATATCGTT
GGAAGTTGCCTATCGTCTTGTCATGTACCATACCTTTGAACGACAGAGCA
GGAAAACGAAAATCGTGCACGGTTTTTTCGTCGAAAAAACTCGGTGGGAT
TCAATTGCATTCGCCCGCAGTTGATGCATGCGCGGCAGAGTTCTTGACAT
GCCTAAAGGTAGACGACTGCAGCTTGGTCTACTGTAGTGCTGCTGCAACG
TGTTGTAGTCCTTCGTAACACCAACGTTCACCACCCACTCCCTCTGTTTG
GACTTACCATACCTGAAGGCTTATGACGCGGTTCCATTTTTCGAAGACAT
CGACCTTTCTGTTCGTGTGCTGGGCTTTTGGTTCATATGGCTTTTCACGG
TGCCTTCTCTGCGAGCGCGAAAACCGGGGGCTGAGGAAAAAGTGGCGTTG
AACGTTGCATTTATTGCTACTCCACTCGTCAGTTTTGCAATGCCCTTCAT
TACTAAGGTATGTAGGCGGTTGTAGTACTGTAAAGCGCATGCTGGGTCTG
GACACGTGGTCGGATATCGGAGGATGGGTACTGGCGGGTTCACGTTGTCT
CGAACATGCCTTGATTTTTGTTTTCCACCGCTCGGATATCGTAGAGCAAT
GGGATGCAGCGTATGACGAGTGCGATTCTCCAGAGTAAAACCTATATGTT
GTATTGTAAGGTGAACCCTGTAGGGCACAAAATCACCGCTTGGGGTCACC
ACTTGACCTAGGGTTGGCTTCATGTGTGTGGTACACTGTATTTTGGAGTT
CCCCTCTTCGGCGAGCCTGCTGTCTCTGAACTATCTTTACGTTTACCTTT
TGATGCTCTTCATCTTATCCTCTGCTCCTTCGACCGTGTCTTTTTGTCGA
CCTTGTCATGTGCGCAGGACCCGGTGCCTATATACTGGGCTAATATCGCG
ATTCTGAGTGCTTGCTACGGGTACGGCTTCACGATTGGAAGGCCAGACGA
TGGGGGCGCGAGCTCGGAACAGAACCAGCCCAAGTGGCTCAAGTTTATTT
ATAAGGTATTTATAATTATCATGTGTATGAACATGCCCCCTGGTGAAGAC
GTTTCGAATTACGTTGTTGCGTAACTTGCTTTGCCTGTGACTAATTTCGA
CAATGGTTACCCTGCTGGAGGTACCAATCAACAAGATGTACGACATGGTT
TCTTGTCAATGCGCCGTTTGTGGTCTCAAATATTGCCGCCCCAACAAAGA
CGGTGTATTATCGAGGAGATGAAAAATATAATTCAACAATTTTCTTTTCG
CGTGGTGTTCCGACAGAGGGTGGGTTGGCTATTGCTCTGCTCATGGCTGT
GTGTGCCTTTTTTACCCGTCCGCTCTCTCTTTTGACGACATGGAAAATTG
TAATCCAACGCAAAACCGTCTCGACTCGCACTCTTTGTTTCATAAAATAT
TTCATATTATCTTATTGATTACGTCCGCCATCTGATGTTTGTCATGTTGA
TTGCGCCCGCAGTCTCTAGACTTTGGATCCGGCCAAGAACGAGGGGCTCG
GAGAAAGGACGACGATTCCGCGAGTGTCGATGAAAGCGAGGAAGAGTAGA
GTAGTGGATGGAGTACTATACACCCTCTACTCGGAGAGGACGACAGAAGC
GTTGTAGGGGATGCTGCTCTGTGCAGTTGCGTGTAAACCGCGACGGTACC
ATGTGGCCGATATACCGATATCCCAGTGGGCGCCGTGTCGACGTTGAAAA
GGAAAGACAAGCGCGCACAAGCCTTGAACACAGTGGTTTAATGTAAAGGA
ACCTGTTCCCAGACAAGGTTGACAAAGGCGCACAGCCGACGTTTCCCGAT
TACGTACGACATACACACAATGTTCCCAAAACATGCTTTCTTCGCGTTTT
ATCAAACAGCTTTCGGTCATTTTTGGTTGTTCCTAAACGGTACTCAAATA
GCACGCGATTCGACGAAGAATAGATTCAGTGTAGAGACATTTGAAGCGTT
GACTGACCTTTCTTGAACAGTAACAAAATAGTATGACGGAAAAATAGAAA
AGCGTTCCGATGTTTGGGGTATAAGTACTAGTTGCGCATGGTAGCTTCAT
GTCAACGTTGCACAGGACGAGCTCCAGTCTTTCAGATGGTGCCTGAACGC
GACGGAGTTGAGCGGTCATGATGGAAAATATGTTGCGAGATCATACCCAA
GAATACAAGTAAATGACTCAAAGGTGTGCTAACAACAACGTGCCACGCTA
CTTCTGTGACCGTTCGTGTTGCTTTTCAGCTTGAGCCGTGTGTCAACCCC
CAACATCAGAAATGAGAAATAAGAAATTCGAGTGATCAT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4764:3779..9967+

>mRNA_H-paniculata_contig4764.11816.1 ID=mRNA_H-paniculata_contig4764.11816.1|Name=mRNA_H-paniculata_contig4764.11816.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2016bp|location=Sequence derived from alignment at H-paniculata_contig4764:3779..9967+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGGCTATGGCCGAAAGAGCGGCGTATGTACTTGGTTTCTCTGTGGC
TCTCGGGGCAAATGATGGCTATGGCCGAAAGAGCGGCGTATGTACTTGGT
TTCTCTGTGGCTCTCGGGGCAATTCTGGGTGGAGTCAATGCCTTTGTGCC
CTCTATGTCGCTTAGCGCTCTGCAGCGTCTTGATTCGCCAATAAGAAGTG
CCAGTGCCGAAACTTGGACAAGTGTACCAGTCCAATCGAGGAGTCGCACG
GCGGCATCCCGTAGAGCTCAAGGTGCTGGTATTTCCGGCGTATTGAGTGG
TGGTAGATTCTGTGAGAGACAGGGGTCAACGGACGCGTTGAAAGCGCAGA
TGACGGACGAAGAAATGGCTGTTGATCAGTTCTGGGTGGAGTCAATGCCT
TTGTGCCCTCTATGTCGCTTAGCGCTCTGCAGCGTCTTGATTCGCCAATA
AGAAGTGCCAGTGCCGAAACTTGGACAAGTGTACCAGTCCAATCGAGGAG
TCGCACGGCGGCATCCCGTAGAGCTCAAGGTGCTGGTATTTCCGGCGTAT
TGAGTGGTGGTAGATTCTGTGAGAGACAGGGGTCAACGGACGCGTTGAAA
GCGCAGATGACGGACGAAGAAATGGCTGTTGATCAGGCTTTGATAGCGCG
AGTGGCACGAGAGGTGGAGGCGGAATCTGGCGTGGATTTGGAGCAGCTCA
TTAACCCTTCCAAGGCTTTGATAGCGCGAGTGGCACGAGAGGTGGAGGCG
GAATCTGGCGTGGATTTGGAGCAGCTCATTAACCCTTCCAAGGTGATTAA
CCTAGAGCGGGATCTGACAAAGCTACGAGTTGCTCTGGAGGCTGGAATTG
GCAACAGCAGTGAGATCGAAGAGGTGATTAACCTAGAGCGGGATCTGACA
AAGCTACGAGTTGCTCTGGAGGCTGGAATTGGCAACAGCAGTGAGATCGA
AGAGGACATCAAGAAGAAGGAATTGACATTGTCAGTGGAAAAACGATCAA
TCATGAGGGGCTGGCTCAAAAACATCTTCGTTGGACAGGCCGTCATTACC
ACCGTATTGGGGGGACTCATGGACATCAAGAAGAAGGAATTGACATTGTC
AGTGGAAAAACGATCAATCATGAGGGGCTGGCTCAAAAACATCTTCGTTG
GACAGGCCGTCATTACCACCGTATTGGGGGGACTCATGGCTTATGACGCG
GTTCCATTTTTCGAAGACATCGACCTTTCTGTTCGTGTGCTGGGCTTTTG
GTTCATATGGCTTTTCACGGTGCCTTCTCTGCGAGCGCGAAAACCGGGGG
CTGAGGAAAAAGTGGCGTTGAACGTTGCATTTATTGCTACTCCACTCGTC
AGTTTTGCAATGCCCTTCATTACTAAGGCTTATGACGCGGTTCCATTTTT
CGAAGACATCGACCTTTCTGTTCGTGTGCTGGGCTTTTGGTTCATATGGC
TTTTCACGGTGCCTTCTCTGCGAGCGCGAAAACCGGGGGCTGAGGAAAAA
GTGGCGTTGAACGTTGCATTTATTGCTACTCCACTCGTCAGTTTTGCAAT
GCCCTTCATTACTAAGGACCCGGTGCCTATATACTGGGCTAATATCGCGA
TTCTGAGTGCTTGCTACGGGTACGGCTTCACGATTGGAAGGCCAGACGAT
GGGGGCGCGAGCTCGGAACAGAACCAGCCCAAGTGGCTCAAGTTTATTTA
TAAGGACCCGGTGCCTATATACTGGGCTAATATCGCGATTCTGAGTGCTT
GCTACGGGTACGGCTTCACGATTGGAAGGCCAGACGATGGGGGCGCGAGC
TCGGAACAGAACCAGCCCAAGTGGCTCAAGTTTATTTATAAGTCTCTAGA
CTTTGGATCCGGCCAAGAACGAGGGGCTCGGAGAAAGGACGACGATTCCG
CGAGTGTCGATGAAAGCGAGGAAGAGTAGTCTCTAGACTTTGGATCCGGC
CAAGAACGAGGGGCTCGGAGAAAGGACGACGATTCCGCGAGTGTCGATGA
AAGCGAGGAAGAGTAG
back to top