mRNA_H-paniculata_contig4763.11814.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4763.11814.1
Unique NamemRNA_H-paniculata_contig4763.11814.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4763.11814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4763contigH-paniculata_contig4763:997..5203 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size767
Cds size765
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4763.11814.1prot_H-paniculata_contig4763.11814.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4763 999..5203 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930413.5956755-CDS-H-paniculata_contig4763:998..14131622930413.5956755-CDS-H-paniculata_contig4763:998..1413Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4763 999..1413 -
1691481280.9229794-CDS-H-paniculata_contig4763:998..14131691481280.9229794-CDS-H-paniculata_contig4763:998..1413Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4763 999..1413 -
1622930413.614762-CDS-H-paniculata_contig4763:1443..16761622930413.614762-CDS-H-paniculata_contig4763:1443..1676Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4763 1444..1676 -
1691481280.9335735-CDS-H-paniculata_contig4763:1443..16761691481280.9335735-CDS-H-paniculata_contig4763:1443..1676Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4763 1444..1676 -
1622930413.6452699-CDS-H-paniculata_contig4763:5086..52031622930413.6452699-CDS-H-paniculata_contig4763:5086..5203Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4763 5087..5203 -
1691481280.9478953-CDS-H-paniculata_contig4763:5086..52031691481280.9478953-CDS-H-paniculata_contig4763:5086..5203Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4763 5087..5203 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4763.11814.1

>prot_H-paniculata_contig4763.11814.1 ID=prot_H-paniculata_contig4763.11814.1|Name=mRNA_H-paniculata_contig4763.11814.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=255bp
EQPRQIAQNWNPKQKMHKDKWSVTSEWDWGEEGSDLEEEAQTGHADPRRR
LFGSLHSNDDGHSKNTRDRQQLQQNQQDQDAVVIVFSKKDVNAMSTTAAI
SDTNNHKNHHNHSQQQNTSISTTTAISGGNSSSSSHNNNRSSGFFLLFSS
CCCCCRCWSSTSRWGKALLTVTLRCAYPRRRSQPFPRDKANIRAAATVAG
GGRRGLNLGIGSKDNIKSWIKSFIASPRLGSGGGGGGRSGLIDRGAAAGA
GGCVA
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mRNA from alignment at H-paniculata_contig4763:997..5203-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4763.11814.1 ID=mRNA_H-paniculata_contig4763.11814.1|Name=mRNA_H-paniculata_contig4763.11814.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4207bp|location=Sequence derived from alignment at H-paniculata_contig4763:997..5203- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCAGCCGAGGCAGATAGCACAGAATTGGAATCCCAAACAGAAGATGCA
CAAAGACAAGTGGAGCGTTACATCGGAGTGGGACTGGGGTGAAGAAGGCA
GTGATTTGGAGGAAGAAGTGAGTGCTGCAAACAATGGATACAGGCCCACT
AGTTCCATAGGCAGCACTGGTGATTTGAGATGTTGTGACAACCGTTTCAT
ACATACAAAATACAAAGGACACTTCAAAGTAGAGTGCAGGTATAATGGAA
GGATTTTTGGTATCAATTAGTCCACCGACGAGTGCACGCGGCTATTGCTG
AAAGGGACGACTCTCTTTTGTACGGTCGTGACATGCGATGGCGGATTGTT
GCGCTTGTAGATGGGTAGATAGACAGTACGACGAATGTTGTGGCAGAACG
TCTTGGGTGTACAGTCAATAATTTTACGCTACATTGTGGAGAGCACGTTC
CGACCTTCCTGGGGTTGGCCCTTTATCCCGTCATCGGAATAACTTTCTAG
CTGTGTCCGACGCTGAATGGCCAATCCATCTGGGACCGAACCAAATCCAG
GTGCTCGCTTCGCACTACATTCCGAGACTTATAGCCGATCCGCATAGAGC
AGTTGGTGTCCCCCCGAGAGTCAATCTCTCTGGAGCATCGTGTTCTCATT
TGGCGTTCGCCTCTAGGTTTCCTGCTTTGGGATGGAGTGCGCGAGCACAC
GCGTACTGCTGTGAATCTAAAACACGAGACACAACGATAACTGCACAGCA
CAAAGATATTTTAATTCTAGCGATGGAGCCCGCAGAGACGGCTGCAATGG
CTACCTCTATCTGGCCTTTACATTATAGAAACGAGAGCGGCACGGACGAG
CCTTCAGGATAGACAAAGCACTCGCTGTACTCGTTGCGGACTCCCACTTT
TTCACCGCCGCTACTACAACACACCACCTTCACTTCTCCGCGGGACTCCG
ACGCATCGGTCACACCGTCCTTACGGTTCATCGACTTGCGCATGATTGCG
GAGGATTGAATACAACTCCCATCGATTGATAGGAACTTGCGCTTAGACGG
CAGCGTAGGTGATTCAATTTTATGCGAATGGCTGTTGAGATCGTTCGGAC
AATAGGGCTGCATGCAGCCTCGTTCCGGACGTAGATGCAGCCTCGTTCCG
GACGTAGCGTAATGGCGTGCAAAGTATTGAGATTTTGAGGCAGGTTTATC
CACGAAGATATATCGATTAGTCGATCATCATGAGCTAGACCCTATTTGCA
GAGCCCTCGACGGAGCCCCTGCTGTTTTGTTCGCCACCTCTACCAACAGG
CTGCAATGAATACCCTCGGGCACATCACGTGACGGGCCGCCGTTCAAGTC
TCGAAGAGTGCAAGCCAATGTCAAATGACTGTTTCATAGCGGGTAGGGCG
GTACATGAATCACGCAGAAATACTGAATGTTGATTCCTTGTCATGTGTGT
TCACCAGAAAACAGAACACTTTGCAACAAACAAGTACATTGGCCACACTC
ACTGTGGCGTAGCCAATACGCCAAGATTAAGATGTTGTTGAGGCCCAACA
GCTGGAGCAAACGATTTATCACCTCTACTTTGATCGTTTGCAGATAGAGG
TGAGGTTGTTCATCGAACAATATATTCCAGTACTGGTGACTTTCAATCAG
GGAACAATAGTATACCCAGGGTAACGGGGTCTGTATATCGCACACTAATC
ACAACTGTCCGAGCAACTTTCCGCATGGTACATATCCTAACCCACAATGG
ATGGCCCAGTGCAGCTTCAGATTCGGTATTCCCCCCGTTGTCTTTTGAAC
TGGAGCGAGTGCTGGCTGTCGCACCTGTGATTAAGTGCATGTGTGTTGGA
ACAAATAACCACGGACACTCAAAATATTTCCTGCGTTTGCCGAATAGTAT
ATTTGCAAACACATCACATGCGTGCATAGGTACTCAGCGCGGGACGAATT
GCCGCGAAGTAGCTATTTTTTGCGGATCATACATGCGATATGTGCTATTG
CCTCACATCTGACCCATCGTCAGTTGGTGTTTGCCGACTGGGCACAACCT
CGAGGGAAAGTATAAAGTAGGTTCAATGGAAGTGCTCTAGCGAGGTACCT
GGCATTTTTTGCCGCTTCAATGTCGCAGTAACTGTCCTCTAAACTGGTAC
ACGTCCACGTACTAATTAACCAAGATCTGCCTAAGTTCTTACATCCACCA
TGAACATGTTACAATAGATACCGCCATGGTGATATCGTGCACTGCTTCTC
ATCCTTCCGCCAGCATAAAATTTTGCGCTAGGTGAAAATGTACTACATCT
CAATCACAAAAAAAGAAACACGTAACCGAGTCAAAACGGTGAAACAAAAC
GGTTAATAAGAGGTGGACACGGATGCTAATAAAATGCTGTGTGTCTCGGA
ACAATTCATCTGCAAACACGAGAACCTCACTCCCCCCCCCAGCAATCCAT
CTTGGTGTCCGGGTAGGGTCAGTCAATTTGCGATTCAACACGTAAAATTG
CAGTATATATCCATTTCACCATTGTTGCTCCCTTGAGGCCCTAACAAGTT
GTTATTAGACAATATGATGATGGGTGTTTTTCGAGCAACCTTTGACCTGG
ATATCATAACTGAATTGCCATTCCCGCCATTCATCGGAAATGCCGAGGCG
GATTGTCATCGAGACAGCAAAGAGCCCGATTTCCCGCGCCGAAAGTGCCT
GTCATGGGTCTCCGTCACACGGAACGGCGCGCGGGCACGGCCAGCCGGAG
GCTATCAAGCTCCAAGCGAGAGCGGTCGAACCGCAGGAAAACTGGCGCTC
CGACCGTGGTGTCGACTGAAATGCAGCTCTGTCAGCGACCGAAGAGACTG
ACTGACATGGAGCTTTTCAGCAAAAATATAATCAAATCATGAAGATCATA
ATGTACCGTTCAAGATCAGAAATTATAAGGTGATCGTGGTGGTCGTTTTG
GAACAGTTTTTTCAAGTATGTAAGGATGGTCATGCAAGCCTAGCGAGCCA
CTGGGAGCGCAGTGAAGTCCGTGTGTCAAGGACTAGCACGAACTGCATGG
GGATAGTAGACGTGGCTGTAGTTGTAGTTAGCACAGTAGGTACTCATTCC
GAAGGGCCAGGGGGGGGAGGGCCACCGTATCACTCGCATGTGTAGTGTAG
GTAAAGTATGAAACAGTCCTTCCTTTCATCAACTGAAATTCTCATTGCTG
TGCATGGTGAATTGAACCTACCACAGTCAGTTGAACTAAGACTCTGAAGC
TCATATAATAACTCTATTGCACCCATGTTGAGGTTATGCAGCTGACTCCA
AACTCCAGTTTGTATAGGCTTCGCGGCAACATAATATCAATACGGGGAGG
GTAACACCGTACCTCCTACGGTAACAAGAACGCACTGAGCGAGAGGAACC
ATCGGCGCACTGAGGTTGGAAAACAAATATACAGTAATCGCTAATTTTTG
CCGTCCCCTCAAATGGTTCCCCACGTGCGTACCCGGACAAATGTCCACGA
TCCTATGCGTGCAACCCGCTTGAGCAGGCACAGACAGGCCACGCGGATCC
ACGGCGGCGATTATTCGGCAGCCTCCACAGCAATGATGATGGCCACAGCA
AAAACACGCGCGACAGGCAGCAACTGCAGCAAAACCAGCAGGATCAAGAC
GCCGTCGTCATCGTCTTTTCTAAGAAAGACGTTAACGCGATGAGCACAAC
CGCAGCCATAAGTGATACAAACAATCACAAAAATCACCACAATCACAGCC
AACAGCAGAAACATAATAATATTTGTCAAGATGACATTATCACCAGCATC
TCCACCACCACCGCGATCAGTGGCGGCAACAGCAGCAGCAGCAGCCACAA
CAACAACCGCTCCTCAGGCTTCTTCCTGTTATTCTCCTCGTGTTGTTGCT
GCTGCCGCTGCTGGTCGTCGACCAGCCGCTGGGGCAAGGCCCTGCTCACC
GTCACGCTCCGATGCGCGTATCCGAGAAGGCGATCTCAGCCCTTTCCCCG
AGACAAGGCCAACATCAGAGCAGCAGCAACAGTAGCAGGGGGAGGACGAC
GGGGACTTAACCTAGGCATCGGCAGCAAGGACAACATCAAGTCATGGATA
AAGAGCTTCATCGCATCTCCCAGACTCGGGTCGGGGGGTGGCGGAGGAGG
GAGGAGTGGTCTCATTGATAGGGGGGCGGCGGCAGGTGCCGGCGGCTGTG
TGGCGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig4763:997..5203-

>mRNA_H-paniculata_contig4763.11814.1 ID=mRNA_H-paniculata_contig4763.11814.1|Name=mRNA_H-paniculata_contig4763.11814.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1530bp|location=Sequence derived from alignment at H-paniculata_contig4763:997..5203- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCAGCCGAGGCAGATAGCACAGAATTGGAATCCCAAACAGAAGATGCA
CAAAGACAAGTGGAGCGTTACATCGGAGTGGGACTGGGGTGAAGAAGGCA
GTGATTTGGAGGAAGAAGAGCAGCCGAGGCAGATAGCACAGAATTGGAAT
CCCAAACAGAAGATGCACAAAGACAAGTGGAGCGTTACATCGGAGTGGGA
CTGGGGTGAAGAAGGCAGTGATTTGGAGGAAGAAGCACAGACAGGCCACG
CGGATCCACGGCGGCGATTATTCGGCAGCCTCCACAGCAATGATGATGGC
CACAGCAAAAACACGCGCGACAGGCAGCAACTGCAGCAAAACCAGCAGGA
TCAAGACGCCGTCGTCATCGTCTTTTCTAAGAAAGACGTTAACGCGATGA
GCACAACCGCAGCCATAAGTGATACAAACAATCACAAAAATCACCACAAT
CACAGCCAACAGCAGAAGCACAGACAGGCCACGCGGATCCACGGCGGCGA
TTATTCGGCAGCCTCCACAGCAATGATGATGGCCACAGCAAAAACACGCG
CGACAGGCAGCAACTGCAGCAAAACCAGCAGGATCAAGACGCCGTCGTCA
TCGTCTTTTCTAAGAAAGACGTTAACGCGATGAGCACAACCGCAGCCATA
AGTGATACAAACAATCACAAAAATCACCACAATCACAGCCAACAGCAGAA
CACCAGCATCTCCACCACCACCGCGATCAGTGGCGGCAACAGCAGCAGCA
GCAGCCACAACAACAACCGCTCCTCAGGCTTCTTCCTGTTATTCTCCTCG
TGTTGTTGCTGCTGCCGCTGCTGGTCGTCGACCAGCCGCTGGGGCAAGGC
CCTGCTCACCGTCACGCTCCGATGCGCGTATCCGAGAAGGCGATCTCAGC
CCTTTCCCCGAGACAAGGCCAACATCAGAGCAGCAGCAACAGTAGCAGGG
GGAGGACGACGGGGACTTAACCTAGGCATCGGCAGCAAGGACAACATCAA
GTCATGGATAAAGAGCTTCATCGCATCTCCCAGACTCGGGTCGGGGGGTG
GCGGAGGAGGGAGGAGTGGTCTCATTGATAGGGGGGCGGCGGCAGGTGCC
GGCGGCTGTGTGGCGCACCAGCATCTCCACCACCACCGCGATCAGTGGCG
GCAACAGCAGCAGCAGCAGCCACAACAACAACCGCTCCTCAGGCTTCTTC
CTGTTATTCTCCTCGTGTTGTTGCTGCTGCCGCTGCTGGTCGTCGACCAG
CCGCTGGGGCAAGGCCCTGCTCACCGTCACGCTCCGATGCGCGTATCCGA
GAAGGCGATCTCAGCCCTTTCCCCGAGACAAGGCCAACATCAGAGCAGCA
GCAACAGTAGCAGGGGGAGGACGACGGGGACTTAACCTAGGCATCGGCAG
CAAGGACAACATCAAGTCATGGATAAAGAGCTTCATCGCATCTCCCAGAC
TCGGGTCGGGGGGTGGCGGAGGAGGGAGGAGTGGTCTCATTGATAGGGGG
GCGGCGGCAGGTGCCGGCGGCTGTGTGGCG
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