mRNA_H-paniculata_contig47605.11812.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig47605.11812.1
Unique NamemRNA_H-paniculata_contig47605.11812.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig47605.11812.1 vs. uniprot
Match: A0A6H5JI18_9PHAE (PAO protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI18_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 2.970e-7
Identity = 25/34 (73.53%), Postives = 27/34 (79.41%), Query Frame = 1 
Query:   19 QDGGAIKFVPPLPSTKLDAIRRLGFGTADKVFLR 120
            QDG A+ F PPLP  KL AIRRLGFGTADK F+R
Sbjct:  499 QDGMALTFSPPLPQAKLAAIRRLGFGTADKFFVR 532
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BLAST of mRNA_H-paniculata_contig47605.11812.1 vs. uniprot
Match: D7G835_ECTSI (Similar to peroxisomal n1-acetyl-spermine/spermidine oxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G835_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 1.950e-6
Identity = 23/34 (67.65%), Postives = 27/34 (79.41%), Query Frame = 1 
Query:   19 QDGGAIKFVPPLPSTKLDAIRRLGFGTADKVFLR 120
            +DG A+ F PPLP  KL AIRR+GFGTADK F+R
Sbjct:  456 KDGTALTFSPPLPQAKLAAIRRVGFGTADKFFVR 489
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig47605.11812.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JI18_9PHAE2.970e-773.53PAO protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7G835_ECTSI1.950e-667.65Similar to peroxisomal n1-acetyl-spermine/spermidi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig47605contigH-paniculata_contig47605:251..373 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size123
Cds size123
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930413.5064688-CDS-H-paniculata_contig47605:250..3731622930413.5064688-CDS-H-paniculata_contig47605:250..373Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47605 251..373 -
1691481280.9019608-CDS-H-paniculata_contig47605:250..3731691481280.9019608-CDS-H-paniculata_contig47605:250..373Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47605 251..373 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig47605.11812.1prot_H-paniculata_contig47605.11812.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig47605 251..373 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig47605.11812.1

>prot_H-paniculata_contig47605.11812.1 ID=prot_H-paniculata_contig47605.11812.1|Name=mRNA_H-paniculata_contig47605.11812.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=41bp
VLVSGRQDGGAIKFVPPLPSTKLDAIRRLGFGTADKVFLR*
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mRNA from alignment at H-paniculata_contig47605:251..373-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig47605.11812.1 ID=mRNA_H-paniculata_contig47605.11812.1|Name=mRNA_H-paniculata_contig47605.11812.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=123bp|location=Sequence derived from alignment at H-paniculata_contig47605:251..373- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTTGGTTTCGGGCCGCCAGGATGGGGGTGCGATAAAATTCGTCCCGCC
TCTTCCCTCGACGAAGCTGGACGCCATCAGACGCCTGGGCTTCGGTACCG
CTGACAAGGTGTTCCTTAGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig47605:251..373-

>mRNA_H-paniculata_contig47605.11812.1 ID=mRNA_H-paniculata_contig47605.11812.1|Name=mRNA_H-paniculata_contig47605.11812.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=246bp|location=Sequence derived from alignment at H-paniculata_contig47605:251..373- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTTGGTTTCGGGCCGCCAGGATGGGGGTGCGATAAAATTCGTCCCGCC
TCTTCCCTCGACGAAGCTGGACGCCATCAGACGCCTGGGCTTCGGTACCG
CTGACAAGGTGTTCCTTAGGTGAGTTTTGGTTTCGGGCCGCCAGGATGGG
GGTGCGATAAAATTCGTCCCGCCTCTTCCCTCGACGAAGCTGGACGCCAT
CAGACGCCTGGGCTTCGGTACCGCTGACAAGGTGTTCCTTAGGTGA
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