mRNA_H-paniculata_contig476.11810.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig476.11810.1 vs. uniprot
Match: D8LAZ1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAZ1_ECTSI) HSP 1 Score: 884 bits (2285), Expect = 4.590e-288 Identity = 658/1456 (45.19%), Postives = 821/1456 (56.39%), Query Frame = 1
Query: 1 RMGGRFMPAYYHELVGQSGDR-----GPDGFDVSPDEREAWASSSAPSLDPVEVELFAFKSSWDVVKACDRYFARALNP--NGLPPPARELVAIRQARQETSRHLSELLEFAQTRLLEYARLVAEEGILRAMDAGVGNRGVATEGSLLSSCVWELQEQGYLASQRNWIPQQETEKSQTPNVRNPAAGGAAGLGRSGRMRVDGDVIEVETLSGSFFWDPDEEGEVFVPTNNGTA--INPIKILTGGDGVPSPRRSMQASSLMADFDDEDSDETEXXXXXXXXXXXXXXXXXXXXXXXXXXARRSFASLDSSSGADXXXXXXXXXARRGDGGWVGRGRGGGIRRQLDSPGMLEDAYLQLTHSLAQHNQRAGRVRAAARCWGKRTELLLERGEMGIAQARLASLADLYQTEGWLPQAFWALHRLARCRRAIAVSSSPEGKDRAATPESRIYVSTVMRMAALLKDPQVRLEGGATAVDRATAGLLRDVHELT---AGNPAPFLSTSS--------VAEEKLLPFGADVPGADGDRGHVYQLQCFANVKISVLVSGVGGSG-------------GGEERPRLRSPATLPTVHVGDTLRVSCVLTSHLPEAVTLDGLELEMVYEG----RYMGGRE---------DENATHRRSMRTPALPGGRRSLRRLESVKTMVITEDDVASPPSPTSAAPTPAKFRPPPPVVTATNALTDSLADMDGVVGPAAIAAATAADREVMAGQQISKVR---SQSLSPRSNASAAKNVFGSVQGTGSGVDIPAVFPRHGRSRSPVRHSSQGESPTSSSPGPPTSPKSHLSRQRALFSAKVDGPTQLLPGETQVIFSLRPTMSGIVTASKISASWERVRLVGLLPPGGRGAGGNGGGPASVVTQPLTLETRPPPPTPSAVIRPFRPRTTLEILPPAFLPAGGGGWIRVVVVTGPDTIRGARLRLGVGVGLAWGAVALAKISLHPVEDRGDXXXXXXXXVR----------------ETRALATAKEDPAEIAVELPDEIKAGWRVDVFLRVLSTAPLAPDQFDTRVSSLFTVPAPKPCIVKAEMQAWHSR--DAAPGAPAKASLSTSDAADEAGVECRIRARAGVLVRLPFEMRTTVMPRPGRVVLAEASLVCHAPVALALRSCEIAELEVGTTVIADPNTFLSGEILPPGQPLRLMACLRRGGGEVVSSSALSSVGDSLVAYSRSSSDSDCSAGFPAPPALALLRLRYEIHR--GDDGDGGEKKAAAAEGSNAREREEFIFDVAIPEPPERALDAARSQFISSTADLGSGS-RAQVTLTTFVEPCDVGVARGKRVVVGDGSLLELRLAEPRAFDFGVEVGLEASDGAE----ASAAQLVAFQVVASPSDWMISGLVTGSTKLGAEVGR-HMLCKVHLVPIRGGLLSLPQLKVTAD---ASDGQDNIVVWTPEQRKVLVLPPGDATSMCRARTP 4134
RMGGRFMPAYYHELVGQ+ D G D E SSS+ +LDP EVELFA KSSWDVVKACDR FARALNP +G+ PP RE+ AIR++R ETSR L ELL+FAQ ++LEYARLV + G D G G G L+ SCVWELQE+G+L SQRNWIP E + +R LGR+GRMRV+G V++V+ +SG +FWD DEEGEVF+P + NP+K +TGGDGVPSP++S +AS+ + DFDD+ XXXXXXXXXXXXXXXXXXXXXXXXXA A+ XXXXXX G W+ LD P LEDAYLQLTHSL QHNQRAGR+RAAARCWG+R ELLLERGE+G+AQARL++LADLYQ EGW PQAFWALHRLARCRR++A+S E +A YVSTVMR+AA+LKDP+VR +GG AVDRA A LLRD L AG+P S S +A F D G + Y+LQCFA+V +SV V GG G P L VHVGD L VSCVLTSHLP+AVTLD L LEM EG GG+E + ++RRS P + LRRLESV+T V EDD++ +P AP K + PPP + A + DG G + + G Q+ +R SQSLSPR +A T S D+ R R P ++S P +LLPG+ +V+F+LRPT++G++TAS++SA+W V LV +L GGRG G +G VT P P PP PSAV+RPFRP+ L+++PP+FLP G W++V V GPDT+RG+RLR+ +G GLAWG +++ + G XXXXXXXX E AL+ E+ ++ V L + ++ G+ +V LRV STA +P ++ AP+ +V+AE++AWHSR DAA AAD+AGVECR ARA ++ RLPFE R V R VV A+ +LVC APVAL+LRSCE++ LE G V++DPN FL+GE LPPGQPLRL ACLRR G P LA+ RLRY I G+ GD G+ + E F+FDV IP P + + +GS RAQ LTT V PCD G A G G + L+LAEPRAF+FGV V EAS G E +A V +QVVASPSDWM+ GL+ GS KL + G +LC+VHLVPIRGGL+ LP+L V + A+ G+ + VW P+ RKVLVLPPGD+ S+C+AR P
Sbjct: 543 RMGGRFMPAYYHELVGQAADLQEGGGXXXGGDFDEGASEGGKSSSSTALDPAEVELFALKSSWDVVKACDRDFARALNPGASGVEPPPREVSAIRKSRVETSRVLGELLDFAQKKVLEYARLVGQRG-RDGDDFGDGGEG------LMGSCVWELQERGFLPSQRNWIPLDEEVAAAAAALRE----NEEALGRTGRMRVEGGVVDVQAVSGEYFWDYDEEGEVFIPPQDPGVKRFNPMKAITGGDGVPSPQKSRRASNRITDFDDDXX-----XXXXXXXXXXXXXXXXXXXXXXXXXALSKLAAEXXXXXXXXXXXXXTAGVGSDVGLWL-----------LDRPEALEDAYLQLTHSLGQHNQRAGRIRAAARCWGRRVELLLERGEVGVAQARLSNLADLYQAEGWTPQAFWALHRLARCRRSLALSDRNEA-GQATDAGDASYVSTVMRLAAVLKDPRVRSDGGKAAVDRAAAALLRDARSLAGEPAGSPGRGFSPPSPSADNNAGIASASSHFFSGDSTNDVGGK-RAYRLQCFADVSLSV-VEKEGGVGEXXXXXXXXXXXXXXXXXXXXXXPDPLSAVHVGDRLLVSCVLTSHLPQAVTLDSLSLEMTLEGGXXXXXRGGQEASAGGRSGVGDRFSNRRSS-----PRRSKVLRRLESVRTAVAAEDDLSPSRTPAPGAP---KLQSPPPGTASNGAAALLASGADGSAGQG---------KGKVPGFQVPPIRTERSQSLSPRLSA------------TSSASDL-----RESLMRVPAGNTSSR-------------------------------PVELLPGDNEVVFTLRPTVAGVITASRVSAAWGGVTLVQVLSGGGRGRGPSG------VTLPSAWLGAPRPP-PSAVVRPFRPQAVLKVVPPSFLPLGNEVWLKVAVTAGPDTLRGSRLRVTMGRGLAWGDAEASRVRWRRLSGGGGXXXXXXXXXXXXXSEGADDGCGPAEAEGPALSRPGEEATDMLVALEEVLRPGYVAEVSLRVRSTAEASPPAGGGPGPAV----APRSHVVRAELEAWHSRSPDAA-------------AADDAGVECRTYARAAIVPRLPFEARVAVTARQAGVVFAQTALVCTAPVALSLRSCELSRLEPGAEVLSDPNGFLNGESLPPGQPLRLAACLRRPSAATXXXXXXXXXXXXXSRGGGEERKGSVGGGVP----LAVHRLRYSIGTVAGESGDSGQAE------------EIFVFDVCIPSPADGXXXXXXXXXXXXXSPGAAGSGRAQRCLTTAVRPCDDGGAED-----GKGGVTRLKLAEPRAFEFGV-VDSEASGGGEDGTGGTAPPTVTYQVVASPSDWMVGGLIRGSAKLDKKGGGLQVLCRVHLVPIRGGLVELPRLDVVVERGRAAPGE--VEVWNPDLRKVLVLPPGDSASVCQARAP 1855
BLAST of mRNA_H-paniculata_contig476.11810.1 vs. uniprot
Match: A0A7S2KBE6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KBE6_9STRA) HSP 1 Score: 68.6 bits (166), Expect = 1.100e-7 Identity = 67/264 (25.38%), Postives = 107/264 (40.53%), Query Frame = 1
Query: 991 IRRQLDSPGMLEDAYLQLTHSLAQHNQRAGRVRAAARCWGKRTELLLERGEMGIAQARLASLADLYQTEGWLPQAFWALHRLARCRRAIAVSSSPEGKDRAATPESRIYVSTVMRMAALLKDPQVRLEGGATAVDRATAGLLRDVHELTAGNPAPFLSTSSVAEEKLLPFGADVPGADGDRGHVYQLQCFANVKISVLVSGVGGSGGGEERPRLRSPATLPTVHVGDTLRVSCVLTSHLPEAVTLDGLELEMV----YEGRYMG 1770
+R + ED YL+L + N+RAGR R A+R R E+L+ RGE +A L++ + W +W + RLA C+R + Y+ T L + RL + + TA L ++ E ++ ++VAE + F F ++S+ G S + P LR + +VGD LR S + SHLP A++++G+ L +V YE Y G
Sbjct: 518 VRNAFSNSSTYEDTYLELAKAAVYINRRAGRFRFASRLEDHRAEVLISRGEYNLAADVLSNNVGACARDQWNRAHYWRIFRLACCQRVSG--------------DVLAYLET------LTQSFNPRLS---SVAPKKTASLFQNDLEA-------LITDAAVAEPRWGAFP------------------FLETELSIESETAGKSS--QPLPFLRRKLSKYLTYVGDELRFSLSINSHLPRAISVNGIRLYLVTLASYEQVYRG 731 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig476.11810.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig476.11810.1 >prot_H-paniculata_contig476.11810.1 ID=prot_H-paniculata_contig476.11810.1|Name=mRNA_H-paniculata_contig476.11810.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1378bp MGGRFMPAYYHELVGQSGDRGPDGFDVSPDEREAWASSSAPSLDPVEVELback to top mRNA from alignment at H-paniculata_contig476:25526..36584- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig476.11810.1 ID=mRNA_H-paniculata_contig476.11810.1|Name=mRNA_H-paniculata_contig476.11810.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=11059bp|location=Sequence derived from alignment at H-paniculata_contig476:25526..36584- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig476:25526..36584- >mRNA_H-paniculata_contig476.11810.1 ID=mRNA_H-paniculata_contig476.11810.1|Name=mRNA_H-paniculata_contig476.11810.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=8268bp|location=Sequence derived from alignment at H-paniculata_contig476:25526..36584- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |