mRNA_H-paniculata_contig47591.11808.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig47591.11808.1
Unique NamemRNA_H-paniculata_contig47591.11808.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig47591.11808.1 vs. uniprot
Match: A0A6H5JZQ5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ5_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.020e-11
Identity = 45/136 (33.09%), Postives = 67/136 (49.26%), Query Frame = 2 
Query:   32 NHLTGIARTTRGELSAAFVSRYIDRMWDSGCVDPSFFKDARVMFTPPFHSGKRLDMLRLVAGNDNRLSTNAEVSVPAPLSDMADRPAETWAEIRARTTTAGQSEMMRRKDTVKAREAKRLRFSGEPANHRFSKRQR 439
            + L  +   TR ELS A V R   R+WD    DPS F+DA V+ TPPF++GK L+ LRL A +   LS   +   P   S++  +    WA+I+ R   A +    R +      +    RF GE +    +++ R
Sbjct:    5 SELRPVTVKTRKELSKALVERLFGRVWDDDSADPSPFRDAAVLLTPPFNTGKYLEALRLSAADAEYLSIGKKGLAPTMDSEVTAKLDGCWADIKRRAWEAARERNRRSESLDDGVQPLHKRFRGESSTSSATRKSR 140
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig47591.11808.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JZQ5_9PHAE1.020e-1133.09Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig47591contigH-paniculata_contig47591:113..620 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size508
Cds size378
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig47591.11808.1prot_H-paniculata_contig47591.11808.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig47591 219..596 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930412.8589973-UTR-H-paniculata_contig47591:112..2181622930412.8589973-UTR-H-paniculata_contig47591:112..218Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig47591 113..218 +
1691481280.5731258-UTR-H-paniculata_contig47591:112..2181691481280.5731258-UTR-H-paniculata_contig47591:112..218Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig47591 113..218 +
1622930412.8985403-UTR-H-paniculata_contig47591:596..6201622930412.8985403-UTR-H-paniculata_contig47591:596..620Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig47591 597..620 +
1691481280.6040182-UTR-H-paniculata_contig47591:596..6201691481280.6040182-UTR-H-paniculata_contig47591:596..620Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig47591 597..620 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930412.879291-CDS-H-paniculata_contig47591:218..5961622930412.879291-CDS-H-paniculata_contig47591:218..596Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47591 219..596 +
1691481280.5877202-CDS-H-paniculata_contig47591:218..5961691481280.5877202-CDS-H-paniculata_contig47591:218..596Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47591 219..596 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig47591.11808.1

>prot_H-paniculata_contig47591.11808.1 ID=prot_H-paniculata_contig47591.11808.1|Name=mRNA_H-paniculata_contig47591.11808.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp
MWDSGCVDPSFFKDARVMFTPPFHSGKRLDMLRLVAGNDNRLSTNAEVSV
PAPLSDMADRPAETWAEIRARTTTAGQSEMMRRKDTVKAREAKRLRFSGE
PANHRFSKRQRRHMGNVRQQCGREG*
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mRNA from alignment at H-paniculata_contig47591:113..620+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig47591.11808.1 ID=mRNA_H-paniculata_contig47591.11808.1|Name=mRNA_H-paniculata_contig47591.11808.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=508bp|location=Sequence derived from alignment at H-paniculata_contig47591:113..620+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTTTTTGCCTCAGCCCTCCGGGAATCAAAAAACCACCTCACCGGCATCG
CCCGCACTACCCGCGGTGAACTCTCCGCCGCCTTCGTGTCAAGGTACATT
GACCGAATGTGGGACAGCGGCTGTGTAGACCCATCCTTCTTCAAGGACGC
CCGTGTAATGTTTACGCCCCCGTTCCACTCAGGCAAGCGCTTAGATATGC
TACGGCTGGTTGCAGGCAACGATAACAGACTATCCACCAACGCCGAAGTG
TCGGTTCCAGCGCCGCTGAGTGATATGGCTGATAGGCCGGCGGAAACTTG
GGCAGAGATTCGTGCCCGGACGACCACGGCGGGGCAATCGGAGATGATGA
GGCGTAAGGACACCGTCAAGGCTCGTGAGGCGAAACGCCTGAGGTTTAGC
GGCGAGCCAGCCAATCACCGGTTCTCGAAGCGGCAGCGACGACACATGGG
CAATGTTCGGCAGCAATGTGGCAGAGAAGGCTGAGATTGTGCTAACTCCC
GAAGAAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig47591:113..620+

>mRNA_H-paniculata_contig47591.11808.1 ID=mRNA_H-paniculata_contig47591.11808.1|Name=mRNA_H-paniculata_contig47591.11808.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at H-paniculata_contig47591:113..620+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGGGACAGCGGCTGTGTAGACCCATCCTTCTTCAAGGACGCCCGTGT
AATGTTTACGCCCCCGTTCCACTCAGGCAAGCGCTTAGATATGCTACGGC
TGGTTGCAGGCAACGATAACAGACTATCCACCAACGCCGAAGTGTCGGTT
CCAGCGCCGCTGAGTGATATGGCTGATAGGCCGGCGGAAACTTGGGCAGA
GATTCGTGCCCGGACGACCACGGCGGGGCAATCGGAGATGATGAGGCGTA
AGGACACCGTCAAGGCTCGTGAGGCGAAACGCCTGAGGTTTAGCGGCGAG
CCAGCCAATCACCGGTTCTCGAAGCGGCAGCGACGACACATGGGCAATGT
TCGGCAGCAATGTGGCAGAGAAGGCTGAATGTGGGACAGCGGCTGTGTAG
ACCCATCCTTCTTCAAGGACGCCCGTGTAATGTTTACGCCCCCGTTCCAC
TCAGGCAAGCGCTTAGATATGCTACGGCTGGTTGCAGGCAACGATAACAG
ACTATCCACCAACGCCGAAGTGTCGGTTCCAGCGCCGCTGAGTGATATGG
CTGATAGGCCGGCGGAAACTTGGGCAGAGATTCGTGCCCGGACGACCACG
GCGGGGCAATCGGAGATGATGAGGCGTAAGGACACCGTCAAGGCTCGTGA
GGCGAAACGCCTGAGGTTTAGCGGCGAGCCAGCCAATCACCGGTTCTCGA
AGCGGCAGCGACGACACATGGGCAATGTTCGGCAGCAATGTGGCAGAGAA
GGCTGA
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