mRNA_H-paniculata_contig4758.11806.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4758.11806.1
Unique NamemRNA_H-paniculata_contig4758.11806.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4758.11806.1 vs. uniprot
Match: D7FPV2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPV2_ECTSI)

HSP 1 Score: 380 bits (977), Expect = 2.060e-119
Identity = 180/204 (88.24%), Postives = 188/204 (92.16%), Query Frame = 2 
Query:  131 DDDGEWSGDALDRKDEDRAQQFSHLGAAFRTNVEHFGPNDFFVMQKCMKEDAATPTLKSVVALLKLGDWDPDVFYKFRDTILNQVSTAVTKLKKDLCRGIPRVWSNYYMLDKDKDVAFEIGRFYYGIREYRNALKFYRDSSENVGQHHVTFHNMGLCYYSMGDLHQAKANFELALGLNGAYEKAKSWQRKVHQELKSPTRNGSP 742
            D+DGEW+G+A+DRKD +R+ QF HL AAFRTNVE FGPNDFFVMQKCMKEDAATPTLKSVVALLKLGDWDPDVFYKFRDTILNQVSTAVTKLKKDLCRGIPRVWSNYYMLDKDKDVAFEIGRFYYGIREY NAL FYRDSSE+VGQHHVTFHNMGLCYYSMGDLHQAK NFELAL +N  YEKAKSWQRKVHQEL  P  NG P
Sbjct:  461 DEDGEWTGEAMDRKDSERSSQFPHLEAAFRTNVEQFGPNDFFVMQKCMKEDAATPTLKSVVALLKLGDWDPDVFYKFRDTILNQVSTAVTKLKKDLCRGIPRVWSNYYMLDKDKDVAFEIGRFYYGIREYENALGFYRDSSESVGQHHVTFHNMGLCYYSMGDLHQAKINFELALDMNANYEKAKSWQRKVHQELNCPEVNGEP 664
[Close]
BLAST of mRNA_H-paniculata_contig4758.11806.1 vs. uniprot
Match: A0A835Z6J8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6J8_9STRA)

HSP 1 Score: 293 bits (750), Expect = 6.400e-86
Identity = 133/194 (68.56%), Postives = 165/194 (85.05%), Query Frame = 2 
Query:  134 DDGEWSGDALDRKDEDRAQQFSHLGAAFRTNVEHFGPNDFFVMQKCMKEDAATPTLKSVVALLKLGDWDPDVFYKFRDTILNQVSTAVTKLKKDLCRGIPRVWSNYYMLDKDKDVAFEIGRFYYGIREYRNALKFYRDSSENVGQHHVTFHNMGLCYYSMGDLHQAKANFELALGLNGAYEKAKSWQRKVHQEL 715
            DDG+W+G A + KDE R++ F +L  AF+ +VEHFGPNDFFVMQK +KEDA +P+L++VVALLKLGDWDPDVFYKFRD ILNQV T+  KL+KDLCRG+PRVW NYYMLDKDKDVAFEIGRFYYGIR+Y +AL++Y+ SS+++G+HHVT HN+GLCYYSMG++  A  NF+ AL LN  Y+KA SW++KV QEL
Sbjct:  458 DDGQWTGGAFEAKDEARSRLFPNLAGAFKYHVEHFGPNDFFVMQKGLKEDAPSPSLRTVVALLKLGDWDPDVFYKFRDVILNQVPTSGLKLRKDLCRGVPRVWENYYMLDKDKDVAFEIGRFYYGIRDYSHALEYYKFSSDHIGEHHVTRHNIGLCYYSMGNMTMATQNFDAALRLNPEYDKAHSWKQKVQQEL 651
[Close]
BLAST of mRNA_H-paniculata_contig4758.11806.1 vs. uniprot
Match: A0A7S2D5C4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D5C4_9STRA)

HSP 1 Score: 280 bits (715), Expect = 5.130e-82
Identity = 132/198 (66.67%), Postives = 156/198 (78.79%), Query Frame = 2 
Query:  128 VDDDGEWSGDALDRKDEDRAQQFSHLGAAFRTNVEHFGPNDFFVMQKCMKEDAATPTLKSVVALLKLGDWDPDVFYKFRDTILNQVSTAVTKLKKDLCRGIPRVWSNYYMLDKDKDVAFEIGRFYYGIREYRNALKFYRDSSENVGQHHVTFHNMGLCYYSMGDLHQAKANFELALGLNGAYEKAKSWQRKVHQELKS 721
            +D+DG W GDA+  + + RA    HL  AF T+V+ FGPNDFFV+QK +KED+  P LK+V+ALLKLGDWDPDVFYKFRD ILNQV T   KL+ DLCRGIPRVW+NYYMLDKDKDVAFEIGRFYYGIREY NAL++Y  SS+ +GQHHVTFHNMGLCYYSMG   ++   F  +L +N  YEKAKSW+ KV  ELK+
Sbjct:  343 LDEDGSWLGDAISDRSDARASTCPHLCQAFSTSVDQFGPNDFFVLQKSLKEDSPAPPLKAVMALLKLGDWDPDVFYKFRDVILNQVPTCGHKLRNDLCRGIPRVWANYYMLDKDKDVAFEIGRFYYGIREYANALEYYTLSSDTIGQHHVTFHNMGLCYYSMGFPDRSLEFFAKSLEMNSDYEKAKSWKDKVAVELKN 540
[Close]
BLAST of mRNA_H-paniculata_contig4758.11806.1 vs. uniprot
Match: A0A4D9D744_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D744_9STRA)

HSP 1 Score: 272 bits (695), Expect = 9.540e-80
Identity = 127/190 (66.84%), Postives = 153/190 (80.53%), Query Frame = 2 
Query:  146 WSGDALDRKDEDRAQQFSHLGAAFRTNVEHFGPNDFFVMQKCMKEDAATPTLKSVVALLKLGDWDPDVFYKFRDTILNQVSTAVTKLKKDLCRGIPRVWSNYYMLDKDKDVAFEIGRFYYGIREYRNALKFYRDSSENVGQHHVTFHNMGLCYYSMGDLHQAKANFELALGLNGAYEKAKSWQRKVHQEL 715
            W+G   + + E R + F  L AAF + V+HFGPNDFFV+QK MKED+  PTLK++VALLKLGDWDPDVFYKFR+TILNQV TA  KL+ DLCRG+PRVW ++YMLD+DKD+AFEIGRFYYGIREY  AL FY  SS ++G+HHVT HNMGLC+YS+G L QA  +FE +L LN +YEKA SWQ+KV QEL
Sbjct:  327 WAGCGAESEGEKRMRAFPCLRAAFSSAVDHFGPNDFFVLQKSMKEDSPNPTLKAIVALLKLGDWDPDVFYKFRETILNQVPTAGQKLRNDLCRGVPRVWEHHYMLDRDKDIAFEIGRFYYGIREYERALGFYSLSSTSIGEHHVTCHNMGLCHYSLGRLQQALEHFERSLALNASYEKAWSWQQKVLQEL 516
[Close]
BLAST of mRNA_H-paniculata_contig4758.11806.1 vs. uniprot
Match: W7TM08_9STRA (Tetratricopeptide repeat family protein n=5 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TM08_9STRA)

HSP 1 Score: 271 bits (692), Expect = 9.870e-78
Identity = 127/190 (66.84%), Postives = 152/190 (80.00%), Query Frame = 2 
Query:  146 WSGDALDRKDEDRAQQFSHLGAAFRTNVEHFGPNDFFVMQKCMKEDAATPTLKSVVALLKLGDWDPDVFYKFRDTILNQVSTAVTKLKKDLCRGIPRVWSNYYMLDKDKDVAFEIGRFYYGIREYRNALKFYRDSSENVGQHHVTFHNMGLCYYSMGDLHQAKANFELALGLNGAYEKAKSWQRKVHQEL 715
            W+G   + + E R + F  L AAF T V+ FGPNDFFV+QK MKED+  PTLK++VALLKLGDWDPDVFYKFR+TILNQV TA  KL+ DLCRG+PRVW ++YMLD+DKD+AFEIGRFYYGIREY  AL FY  SS ++G+HHVT HNMGLC+YS+G L QA  +FE +L LN +YEKA SWQ+KV QEL
Sbjct:  489 WAGPNAESEGEKRVRAFPCLRAAFSTAVDQFGPNDFFVLQKSMKEDSPNPTLKAIVALLKLGDWDPDVFYKFRETILNQVPTAGQKLRNDLCRGVPRVWEHHYMLDRDKDIAFEIGRFYYGIREYERALGFYSLSSTSIGEHHVTCHNMGLCHYSLGRLQQALEHFERSLALNASYEKAWSWQQKVLQEL 678
[Close]
BLAST of mRNA_H-paniculata_contig4758.11806.1 vs. uniprot
Match: A0A7S3K0C6_9STRA (Type II protein arginine methyltransferase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K0C6_9STRA)

HSP 1 Score: 269 bits (687), Expect = 3.450e-77
Identity = 122/191 (63.87%), Postives = 147/191 (76.96%), Query Frame = 2 
Query:  146 WSGDALDRKDEDRAQQFSHLGAAFRTNVEHFGPNDFFVMQKCMKEDAATPTLKSVVALLKLGDWDPDVFYKFRDTILNQVSTAVTKLKKDLCRGIPRVWSNYYMLDKDKDVAFEIGRFYYGIREYRNALKFYRDSSENVGQHHVTFHNMGLCYYSMGDLHQAKANFELALGLNGAYEKAKSWQRKVHQELK 718
            W+GD ++R    RA  FSHL   F   +  FGPNDFFV+QK MKED+  PTLK +VALLKLGDWDPDVFYKFRD ILNQ      KL+ DLCR +PRVW NYY LDKDKDV+FE+GRFYYGIRE+  AL+FYR S+E++G+HHVTFHNMGLC+YS+G L  A  +FE +LGLN  YEKA+SW +KV +E +
Sbjct:  418 WTGDEMERISCQRALSFSHLCRVFEDEIVRFGPNDFFVLQKSMKEDSQQPTLKGIVALLKLGDWDPDVFYKFRDVILNQAPVCGCKLRNDLCRDLPRVWDNYYSLDKDKDVSFEVGRFYYGIREHEKALQFYRISTEHIGEHHVTFHNMGLCHYSLGQLDTALEHFEKSLGLNANYEKARSWHQKVSREFE 608
[Close]
BLAST of mRNA_H-paniculata_contig4758.11806.1 vs. uniprot
Match: A0A6U3RM50_9STRA (Type II protein arginine methyltransferase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3RM50_9STRA)

HSP 1 Score: 261 bits (666), Expect = 4.620e-74
Identity = 120/192 (62.50%), Postives = 152/192 (79.17%), Query Frame = 2 
Query:  143 EWSGD-ALDRKDEDRAQQFSHLGAAFRTNVEHFGPNDFFVMQKCMKEDAATPTLKSVVALLKLGDWDPDVFYKFRDTILNQVSTAVTKLKKDLCRGIPRVWSNYYMLDKDKDVAFEIGRFYYGIREYRNALKFYRDSSENVGQHHVTFHNMGLCYYSMGDLHQAKANFELALGLNGAYEKAKSWQRKVHQEL 715
            +WS D A++ +D DRA  F +L  AFR +V+ FGPNDFFV+QK +KEDA+ P LK+VVALLKLGDWDPDVFYKFRD +LNQ  T   KL+ DL RGIPRVW NY++LD+DKDVAFEIGRFYYG+R+Y +AL+FY++SSE++G+HHVT+HNMGLC+YSM     A   F  +L LN +Y KA SW+ KV +E+
Sbjct:  440 DWSTDGAVEERDWDRAAAFPNLSIAFRDSVDRFGPNDFFVLQKSLKEDASAPALKAVVALLKLGDWDPDVFYKFRDPLLNQAPTCGAKLRNDLLRGIPRVWENYFVLDRDKDVAFEIGRFYYGVRQYASALRFYKESSESIGEHHVTYHNMGLCHYSMNSPKTAIGFFNKSLTLNSSYAKAASWRDKVQKEV 631
[Close]
BLAST of mRNA_H-paniculata_contig4758.11806.1 vs. uniprot
Match: A0A7S3HTN4_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HTN4_9STRA)

HSP 1 Score: 248 bits (634), Expect = 4.060e-73
Identity = 117/205 (57.07%), Postives = 147/205 (71.71%), Query Frame = 2 
Query:  101 LVPRSLWC*VDDDGEWSGDALDRKDEDRAQQFSHLGAAFRTNVEHFGPNDFFVMQKCMKEDAATPTLKSVVALLKLGDWDPDVFYKFRDTILNQVSTAVTKLKKDLCRGIPRVWSNYYMLDKDKDVAFEIGRFYYGIREYRNALKFYRDSSENVGQHHVTFHNMGLCYYSMGDLHQAKANFELALGLNGAYEKAKSWQRKVHQEL 715
            L P   +   D D ++ GD L   D  RA+ F HL  AF  +V+ FGPNDFFV+QK +KED   P L++VVA+LKLGDWDPDVF+KFRDTIL    T   KL+ DLCRGIPRVW NYY+LD DKD+AFEIGRFYYGI++Y NAL +Y++S+ +VG+HHVT+HN GLCYYS+  L  A   F+ AL +   YEKA++W  KV  +L
Sbjct:  112 LSPEGTFDSKDSDADFMGDNLATLDATRAKNFPHLAQAFHDSVDLFGPNDFFVLQKSLKEDLNNPPLRTVVAMLKLGDWDPDVFFKFRDTILMHAPTCGQKLRNDLCRGIPRVWENYYILDTDKDIAFEIGRFYYGIKDYENALFYYKESTTSVGEHHVTYHNQGLCYYSLKKLPLALEMFKKALSMCPEYEKARNWIDKVESDL 316
[Close]
BLAST of mRNA_H-paniculata_contig4758.11806.1 vs. uniprot
Match: A0A7R9YDE7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YDE7_9STRA)

HSP 1 Score: 256 bits (655), Expect = 4.970e-73
Identity = 120/195 (61.54%), Postives = 152/195 (77.95%), Query Frame = 2 
Query:  131 DDDGEWSGDALDRKDEDRAQQFSHLGAAFRTNVEHFGPNDFFVMQKCMKEDAATPTLKSVVALLKLGDWDPDVFYKFRDTILNQVSTAVTKLKKDLCRGIPRVWSNYYMLDKDKDVAFEIGRFYYGIREYRNALKFYRDSSENVGQHHVTFHNMGLCYYSMGDLHQAKANFELALGLNGAYEKAKSWQRKVHQEL 715
            +D   W+G+ L+ +D DRA ++ +L AAF  ++  FGPNDFFVMQK +KED++ P+LKS+VALLKL D+DPDVF+KFRDTILN ++T   KL+ DL RGIPRVW NYY+LDKDKD+AFEIGRFYYGIR Y +AL FY+ SS  +G+HHVTFHNMGLCYYS G L  A   F+ AL ++  YEKA SW+ +V +EL
Sbjct:  417 EDSRPWTGEHLEARDRDRALRWPNLRAAFEQSIVSFGPNDFFVMQKSLKEDSSQPSLKSIVALLKLSDFDPDVFWKFRDTILNALNTCGEKLRADLGRGIPRVWENYYILDKDKDIAFEIGRFYYGIRNYSDALTFYQQSSNEIGEHHVTFHNMGLCYYSEGKLEIALDFFKKALAISSDYEKANSWKLRVEREL 611
[Close]
BLAST of mRNA_H-paniculata_contig4758.11806.1 vs. uniprot
Match: F0YMM3_AURAN (Type II protein arginine methyltransferase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YMM3_AURAN)

HSP 1 Score: 239 bits (610), Expect = 3.460e-67
Identity = 109/191 (57.07%), Postives = 140/191 (73.30%), Query Frame = 2 
Query:  146 WSGDALDRKDEDRAQQFSHLGAAFRTNVEHFGPNDFFVMQKCMKEDAATPTLKSVVALLKLGDWDPDVFYKFRDTILNQVSTAVTKLKKDLCRGIPRVWSNYYMLDKDKDVAFEIGRFYYGIREYRNALKFYRDSSENVGQHHVTFHNMGLCYYSMGDLHQAKANFELALGLNGAYEKAKSWQRKVHQELK 718
            W+G+ ++R    R+  F +L   FR ++  FGPNDFFVMQK MKED   P LK++VALLKL +WDPDVFYKFRD IL QV T   KL+ DLCR +P +W+N+++LDKDKDVAFE+GR YYG+R Y +A++FY  S  + G+HHVTFHNMGLCYYS+G L  A  NF  AL L   Y KA++WQ+K+ +E K
Sbjct:  387 WTGNEVERLSAARSIAFPYLCRTFRDSIISFGPNDFFVMQKSMKEDTQRPALKAIVALLKLSNWDPDVFYKFRDVILQQVPTCTIKLRSDLCRNLPYIWANHFILDKDKDVAFEVGRLYYGLRMYEDAVRFYCISVASSGEHHVTFHNMGLCYYSLGQLEVAMENFNKALWLKNDYAKARAWQQKLLRETK 577
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4758.11806.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPV2_ECTSI2.060e-11988.24Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z6J8_9STRA6.400e-8668.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2D5C4_9STRA5.130e-8266.67Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A4D9D744_9STRA9.540e-8066.84Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TM08_9STRA9.870e-7866.84Tetratricopeptide repeat family protein n=5 Tax=Na... [more]
A0A7S3K0C6_9STRA3.450e-7763.87Type II protein arginine methyltransferase n=1 Tax... [more]
A0A6U3RM50_9STRA4.620e-7462.50Type II protein arginine methyltransferase n=1 Tax... [more]
A0A7S3HTN4_9STRA4.060e-7357.07Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7R9YDE7_9STRA4.970e-7361.54Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
F0YMM3_AURAN3.460e-6757.07Type II protein arginine methyltransferase n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4758contigH-paniculata_contig4758:4747..10973 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score309.7
Seed ortholog evalue1.1e-81
Seed eggNOG ortholog2880.D7FPV2
Hectar predicted targeting categoryother localisation
EggNOG OGs28JR9@1,2QS4P@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons8
Model size1901
Cds size681
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4758.11806.1prot_H-paniculata_contig4758.11806.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4758 5738..10714 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930412.3873525-UTR-H-paniculata_contig4758:4746..52441622930412.3873525-UTR-H-paniculata_contig4758:4746..5244Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4758 4747..5244 -
1691481280.3510985-UTR-H-paniculata_contig4758:4746..52441691481280.3510985-UTR-H-paniculata_contig4758:4746..5244Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4758 4747..5244 -
1622930412.4035656-UTR-H-paniculata_contig4758:5274..57371622930412.4035656-UTR-H-paniculata_contig4758:5274..5737Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4758 5275..5737 -
1691481280.367379-UTR-H-paniculata_contig4758:5274..57371691481280.367379-UTR-H-paniculata_contig4758:5274..5737Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4758 5275..5737 -
1622930412.5810587-UTR-H-paniculata_contig4758:10714..109731622930412.5810587-UTR-H-paniculata_contig4758:10714..10973Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4758 10715..10973 -
1691481280.4537058-UTR-H-paniculata_contig4758:10714..109731691481280.4537058-UTR-H-paniculata_contig4758:10714..10973Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4758 10715..10973 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930412.4232552-CDS-H-paniculata_contig4758:5737..58921622930412.4232552-CDS-H-paniculata_contig4758:5737..5892Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4758 5738..5892 -
1691481280.3762822-CDS-H-paniculata_contig4758:5737..58921691481280.3762822-CDS-H-paniculata_contig4758:5737..5892Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4758 5738..5892 -
1622930412.444528-CDS-H-paniculata_contig4758:6252..63371622930412.444528-CDS-H-paniculata_contig4758:6252..6337Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4758 6253..6337 -
1691481280.384512-CDS-H-paniculata_contig4758:6252..63371691481280.384512-CDS-H-paniculata_contig4758:6252..6337Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4758 6253..6337 -
1622930412.4695582-CDS-H-paniculata_contig4758:7358..74441622930412.4695582-CDS-H-paniculata_contig4758:7358..7444Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4758 7359..7444 -
1691481280.3932698-CDS-H-paniculata_contig4758:7358..74441691481280.3932698-CDS-H-paniculata_contig4758:7358..7444Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4758 7359..7444 -
1622930412.4905224-CDS-H-paniculata_contig4758:8057..81991622930412.4905224-CDS-H-paniculata_contig4758:8057..8199Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4758 8058..8199 -
1691481280.4110606-CDS-H-paniculata_contig4758:8057..81991691481280.4110606-CDS-H-paniculata_contig4758:8057..8199Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4758 8058..8199 -
1622930412.5185266-CDS-H-paniculata_contig4758:9327..94171622930412.5185266-CDS-H-paniculata_contig4758:9327..9417Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4758 9328..9417 -
1691481280.4225945-CDS-H-paniculata_contig4758:9327..94171691481280.4225945-CDS-H-paniculata_contig4758:9327..9417Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4758 9328..9417 -
1622930412.5427687-CDS-H-paniculata_contig4758:9968..100701622930412.5427687-CDS-H-paniculata_contig4758:9968..10070Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4758 9969..10070 -
1691481280.4342427-CDS-H-paniculata_contig4758:9968..100701691481280.4342427-CDS-H-paniculata_contig4758:9968..10070Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4758 9969..10070 -
1622930412.5648558-CDS-H-paniculata_contig4758:10693..107141622930412.5648558-CDS-H-paniculata_contig4758:10693..10714Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4758 10694..10714 -
1691481280.4439964-CDS-H-paniculata_contig4758:10693..107141691481280.4439964-CDS-H-paniculata_contig4758:10693..10714Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4758 10694..10714 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4758.11806.1

>prot_H-paniculata_contig4758.11806.1 ID=prot_H-paniculata_contig4758.11806.1|Name=mRNA_H-paniculata_contig4758.11806.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=227bp
MQKCMKEDAATPTLKSVVALLKLGDWDPDVFYKFRDTILNQVSTAVTKLK
KDLCRGIPRVWSNYYMLDKDKDVAFEIGRFYYGIREYRNALKFYRDSSEN
VGQHHVTFHNMGLCYYSMGDLHQAKANFELALGLNGAYEKAKSWQRKVHQ
ELKSPTRNGSPVLNGDTFPTSTHSPGPNTGSPAFSTSPHATSSGAETDWG
ASAPAPLVGEEAEGGSTHPSEDSIAQ*
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mRNA from alignment at H-paniculata_contig4758:4747..10973-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4758.11806.1 ID=mRNA_H-paniculata_contig4758.11806.1|Name=mRNA_H-paniculata_contig4758.11806.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6227bp|location=Sequence derived from alignment at H-paniculata_contig4758:4747..10973- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTCGATTCATCATCCATATTACCATCACATCCCAATTAATCCCTATTGC
CAATTGCCGATTGCCCTTTGTTGATGGATCTGCGCTGCGCGTTTGATTGG
TTGGTTCCGCGATCTCTGTGGTGCTAAGTAGATGATGACGGTGAATGGTC
CGGAGATGCGCTGGATCGAAAAGACGAAGATAGGGCGCAGCAATTCTCGC
ATCTGGGGGCCGCCTTTAGGACAAACGTGGAGCATTTCGGACCGAACGAT
TTCTTTGTGATGCAAAAATGCATGAAGGAGGTGAGGTGATTGACTGCCTG
CTGTCCGAGCGTTTAATATAGGAGAGTGTGACTATTTGGCTTGTCGAAGA
GCGCTCACGTATGGCGTTGTAGTACGCGGTACACTTCGAGTACAGTGTTG
TGTTTCTCTTTGTTGGTCATCACAGGTGCTGGCTGGCTGGTTGGCTATGC
GGGGAAATGTTTGTAGAAACATGAGTAGGGTGGTGTCAGTCAAGTTGAAA
TTTGTTTTGTTATTCTATTGCAGGTGGCCTTGGAAAAAAAAAAAAAAATC
TCGGGAGGGTAGATATTACTCTCGAACAACGACATGTTTATTATGCCATC
TAACAACCATTGCCAGCCTTCTTCTAATTGTAATTGCCAGATGTTGGGCT
AAAATTTTGTTATTTCTCGTTTTCGTTTGTTTATTCCCCGCGGCTTTAGA
TGAGTTTCATGAATACTACAAGAACACAACGCGGTGAAAATGTTTGTCTG
TGTGTATGTATGTTATCTTCATCCGGCCCCTTCCCCGATGCATCACCGAC
TCGGTGACAGCCGTCCCCGTGTTCCTTTGGTTGCCGCGTTGCTTGCCATC
GCGTTCGTTAGCGTGAATAATGACGTCATTTTGGTTCGTTCAAACTGATG
CAGGATGCTGCGACACCAACGCTGAAGAGTGTGGTGGCTCTACTAAAACT
TGGAGATTGGGACCCGGATGTGTTTTACAAGTTCCGAGACACCATTCTCA
ACCAGGTGACGGGCGTGACCGACCGAACTGGCTAATAAATAATAACTTGT
AGTGTCGTGTGTTTGTGAACACCGTAAGGGGGTGGTGATATAGAGAGTAC
TCTATAGAAGGGAATGGTTCCCACTGAAGTGTGTAGAAGACAGAATATCA
ATATATAGTATTATTATCATTATCATTATCATTATCATTATTTTTTCTTT
CTACTGATACTGGATAGTCATGTCCCAGCTTTTGTGCGCTGGTTCCATTA
TGATCTTCCCGACCGATGTGTCCGAATCTCCCCAGACCGAAGTCTCGGAC
AGGATTTCTTAAAAAAATTGGCGCCTGAACGAGCCACCCGTATGCCGTGT
CACGAGGGAAAACATTCATCCTGTCGATATGTTGTGAGGGATTTAGAGAA
GGTCTTATGTGCAGAGGGCAGTTTTTCAACTTATTGTATTTCTCCCTGCT
TTCTACTCCCATCTCTGATTAATACTTGAGATACTCTGATCGCGGTGAAC
AAGGTCATCCCGTGTGTGCTGGTTCTTTTGCTTAATCCGTTGTATCCGTT
GTATAGGTATCGACGGCAGTGACGAAGCTGAAGAAAGACCTGTGCCGCGG
GATTCCACGAGTGTGGAGTAACTACTATATGCTCGACAAGGACAAGGTAA
GATACAGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGA
GAGCCCGTCGTCAATCGATACCAATCCTATCCCCCCGCCGAATCGTTGGA
AACGATTCGCCCATCTTTTGTATCAGTGGCGCCGTAGTTGTCGGGATGAT
CCGTGAGGACGACACCGGTATGGACGAGTACTAGACATGCATGTTATGTC
ATGTAAAAAAATCAGCAGAGCGAGAAAGGGGGAAGGGGGCGACGATCAGG
CGCTGGGGTTATGTGGTCATTCACCCTCAAATGTAGAATCCACTTCGATA
TGGGTCGTGGTTTCTCGGAATAACTGTATTGCAACGTGTTCGGAATGAAT
GCTCCCAGGAAACCAGCTAAATGCGGCGTGTTCCAATTGAGGCAGGTTTA
CAGCGCAGGCCCAACATCTCGCGCGCGTGATGCACAATCTGTTTTGAACC
TCTGGCGCCCCCAACTCGTTCGGGCTATTCGCTGTAGGAGTCATAATATA
AATGATCCATGTATTGAATGGAACATCTGACTCTCGAGTGTAGTCTTGCA
AGCTAGCTAACTTGGCAGTGTAGCTTTCAGCCTTGAAAAGTGGTCACAAT
TCATGACATACCGCGCGCGAGTTTTCCTTTGTTGTGTTGTTAGGCGTAAA
TATGTACTCTCAGTGTGTTTGAGGCCCGGTTGGTTGGTTAGTTGGTTGAT
TGATTGGTTGTTTGGTTGGTTGGTTAGTTGGTTGGTTGGTTGGTTGGTTC
CCTTGTTTGAGTGAAATATTCATATTTTGATGATTTTTTCCATCATGTGA
GATAATTAATTTAATGTATATATGAGTATAGTATATATGACTATAGTATA
TATTATATATATATATATATATATATATACATATTTTTCAAATATTTCAT
CCAAGGACAAGAAATAAGGAATGATCACATAATCGATCCCCAACCGAATG
GAGTTACCATGGTTGTATACCCGGTGCAAAGGGACGAAGAGGGTTTTCGC
TGCTCCCAAGTTTAGTTGAAAGAGTTGAAGAATCGAATCAAAACCTATGC
TGACACGTTTTACGCACGCCCCCGCCTCCACACGTCCTGTTTCCGCGGCT
CGCGCTCTCTATCTCTCTCGCTAGGACGTCGCGTTTGAGATCGGGAGGTT
CTACTACGGCATTCGAGAGTACCGAAACGCTCTCAAATTCTACCGCGACA
GCTCGGAGAACGTTGGGCAGCACCACGTTACGTTCCACAACATGGGTCTC
TGCTACTACAGCATGGGTGAGGATAACCGTCCGCACGTCCACACATGTGA
TCTAGCCGGCTTGACACCGGAGAGCATTTCGGTCGCTTATGTACACGAGT
ACTAGTATCGACCGGCATTTTATGTTGATGTGCCACGTTCGGCGATGCGC
TTTACGTTGGTGTGGAAAATTCTTTTGTTGATAATGTCAGGTTGGTTGGC
CATCCATGGTTATGTATGTTGCAACGGTTTCGGGCCTCGGCGAAACCCGC
CTAAGACAGTGGGGGTAAGTGAAATAGTCTTTAAAACCCCCTCATTACTG
ATGCGTTTATGTACATTATTGACATTGCAAAGTTCGTCCACAGCCGTGTA
GGCGACGTAGCCGCTTCCAGCTATTCTGTTCGGGGATAAAAGAGGGAATA
CTCTGAGACGGGAAACATTTGGGAACGGGGAAGGTTGCCGTCCTGTGTTG
TTCCATCTGGAAAAATGACGTGTCAAAACAATGTGAACGAGCGATACGCA
GACCGGCAACTAGCTTGTCAAACATACAGCGACTCCGTCTCTACCCCTCA
CTTCGCAAGATAGTAGTATCAGTCGTGTTTTGTTGGTTCATCAATCAGTG
TCTCCCTTCTCTGCCTGCTCTGCGTGCAGGTGACTTGCACCAGGCCAAGG
CCAACTTCGAGCTGGCTTTGGGGCTAAACGGTGCATACGAGAAGGCCAAA
TCATGGCAGCGCAAGGTTGGACTTCCTTCGCCGCGAGTCGACTGAAACTA
TATTGTTGCGATACTTTTGTAGTTGGGCGCCATTACTGTACGTGCCGTGA
GCCCGTCAAAAGCAAACCTTTGGGTGTATGAGAGGAGCTTATTATCCCTC
ACATAAACATATACATACACATGTGCATGTGTGTATATATATATATATGT
ACATGTGCACATACATATGCATGACTTAGACTTGTTTCTCATTTTTTTTT
TGTTAATTTGGCGGTAAAGAGGTATATATATCCGTCCCGGAGCGTTGTAC
TGCGCATGCCGTCCATAACATACATAAAAATGTACGTTAAAGCAAGTGCT
ACATATCAATAGGCAAGCGACTTTGTTACATTACCGTCCCCGTGTCCATT
CTATTAATCAGGGCATGGCATGACCATAGATCCCCTCTCTGTTGAGACCC
CTTAGGTTTGATCAGTTTGTGTATAATAACGAAGTAGTCCAGCTCCTTGA
GGATGCATAGCATATACCTCCGTTTTTTTTTTTTTTGCGTATCTGCTTGT
ACTTTTTACTTACCCTTTACTCTATGGTTATATTCCAAACCGCACTCTCC
TAGTGTAGACGCCATCCTCCTTGTGAAGCTGTCCTCGGCAATTGATGCGT
GTGTGGATGTAGCTATGTTGTAATTGGTGGTAGATTTCTTACTCGTGCAT
GAAGTGTACTAGTGGTCATCTTGTAGTTTATGCATGTTGTTTCAGTCTCG
ACCATGTTACGCACACAAATGATCAAAATTCAAGACGTTCATTCACCTGC
ACGTCGTAGTAATAGTAGAGCGGCAGCAGGAGCACAGCGTCAGTGAGCGG
GCAGTAAGCACTTGTTCGTGTGTAGTAAGTACTCTAGGCCATGCAGACAT
CAATCTTCAGCAATAGCTAGTAATTCTACACTTACGGTTTTTGTTTGTCA
ATATTTACACCCCCTCCCCCCCGCCCGACCCCAGGGTTTTACAAGTAGTC
CTATTATCTTATGTGTTCGATCATCGCCGATGTCAGGTGCACCAAGAACT
GAAGTCTCCGACTCGAAACGGTTCTCCCGTGCTCAACGGGGACACCTTCC
CAACCTCAACACACTCTCCAGGTCTGCTTTGCTTTGGTGTGTAAAACTAG
TAGTGCCTTTATGTTTTTAGTTTTTAGTTTTTATGCCATCACAGCACACA
CCTTTTGTATTTGTATTTCTGCACCCTCGTGATTTTTGTTTTTTCTTCCA
AATAACACAAAGCCGCCTTCATTGTGTCGTCCGATGCGATCGATGACTTG
ACTACATGAAAGCTGTGGTTCGATCTGCACGGGTGCCGGCAAAAACGGAC
TTAGTTGTTTTTTAGTGGATAATCGTAAAAGTGGAAAATGGTCTAAATTC
GCCCAATCTTGAGTGGCCAATAATCCTCATGTATATATCACCTGGTTCAC
CTCGTGAGCACTTTTTTGACGAATGTCGCAGGTCCAAATACAGGATCGCC
TGCGTTCTCCACGTCGCCTCACGCGACTTCCAGCGGGGCGGAGACAGACT
GGGGCGCGAGTGCTCCGGCTCCGCTAGTTGGAGAGGAAGCTGAGGGCGGT
TCTACACATCCCTCAGAGGACTCCATAGCGCAATGATGGTTCCGTTTTTT
TTTTGTTTTTTTTTGGATGGGAGGTCTGTCGATCGGTGGTAGGTCGGTAG
GTCGGCGGTTTTACTCTTGTTATAGTTGTGCTTTTTGTTATTATAGTGGT
GCTCTTTGTTGCATGTTGCCGGTCGAGATGGGCGCGCAATGAATCGAGTA
GAACGGACGGAATTATGCCATAGTAGGGGAGGTAGTGGCTGCCTCTGTTT
TGATCCAGCCAAATGCGGTTTCGTCGCTCGAGCGCCGATGTAGGGATCGC
GCTCGAGCCGGATATCCACTTTCTCTTGATGTTTCGATGGTGGCACCTGA
TCTGTTTAGCTCTTGCTTGATCCACCGTCAAACCTTTCGAGTGTTGGCAG
GCAGCCGCAGCGTTTGTGTTTCATAGTTGCGCTATGTCGGCCCTTTGCCT
TGGCTCGGGCTTTATTTGTTTCGATTTCTCTCTCTCTCTTTCTCTTTCTC
TTTCTCTCTTTCTCTTTCTCTCTTTCTCTTTCTCTCTTTCTCTCTCTCTC
TATCTTTTTCTCTCGGGCTTTATTTGAATCGACTTCTCTCTCCCTTTCTC
CTTCTCTTTTTCTCCTTCTCCTTCTCTCGTTCTCTTGTTTATGGTATACA
TATATTCATATATACATATATAACACGTTACACGGGGTAGGTATTTGATT
TTCTTTCTACCCCAAACAAAACGTTAGGAAAACGGCGTCGCATGTAGAAT
TTTATGAACGGTAGGAACGGGGACGGGGTAAAAAAGCTGTGGTGAGTTCG
CGATGTTGGCGCGTGGTGGGACTGAGTATCCAAGTTGATACACACAAAAT
ATGTATTAGCGGGTGTAGGTGGCGATTTGGAAATGAGAAAAGAGATAATA
GAGTTTTTCCGGGTCTTGCTACCCTAGCGCTTTCTTGAGACATTTTTTTT
TTTTTAACCCCCGGAAGGCTAAGGCAAAACCCTTTCCGCTGCTTCCACTC
TAACACGAAAATTTCATAACTTTCTCA
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Coding sequence (CDS) from alignment at H-paniculata_contig4758:4747..10973-

>mRNA_H-paniculata_contig4758.11806.1 ID=mRNA_H-paniculata_contig4758.11806.1|Name=mRNA_H-paniculata_contig4758.11806.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1362bp|location=Sequence derived from alignment at H-paniculata_contig4758:4747..10973- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAAAAATGCATGAAGGAGATGCAAAAATGCATGAAGGAGGATGCTGC
GACACCAACGCTGAAGAGTGTGGTGGCTCTACTAAAACTTGGAGATTGGG
ACCCGGATGTGTTTTACAAGTTCCGAGACACCATTCTCAACCAGGATGCT
GCGACACCAACGCTGAAGAGTGTGGTGGCTCTACTAAAACTTGGAGATTG
GGACCCGGATGTGTTTTACAAGTTCCGAGACACCATTCTCAACCAGGTAT
CGACGGCAGTGACGAAGCTGAAGAAAGACCTGTGCCGCGGGATTCCACGA
GTGTGGAGTAACTACTATATGCTCGACAAGGACAAGGTATCGACGGCAGT
GACGAAGCTGAAGAAAGACCTGTGCCGCGGGATTCCACGAGTGTGGAGTA
ACTACTATATGCTCGACAAGGACAAGGACGTCGCGTTTGAGATCGGGAGG
TTCTACTACGGCATTCGAGAGTACCGAAACGCTCTCAAATTCTACCGCGA
CAGCTCGGAGAACGTTGGGCAGCACCACGTTACGTTCCACAACATGGGTC
TCTGCTACTACAGCATGGGACGTCGCGTTTGAGATCGGGAGGTTCTACTA
CGGCATTCGAGAGTACCGAAACGCTCTCAAATTCTACCGCGACAGCTCGG
AGAACGTTGGGCAGCACCACGTTACGTTCCACAACATGGGTCTCTGCTAC
TACAGCATGGGTGACTTGCACCAGGCCAAGGCCAACTTCGAGCTGGCTTT
GGGGCTAAACGGTGCATACGAGAAGGCCAAATCATGGCAGCGCAAGGTGA
CTTGCACCAGGCCAAGGCCAACTTCGAGCTGGCTTTGGGGCTAAACGGTG
CATACGAGAAGGCCAAATCATGGCAGCGCAAGGTGCACCAAGAACTGAAG
TCTCCGACTCGAAACGGTTCTCCCGTGCTCAACGGGGACACCTTCCCAAC
CTCAACACACTCTCCAGGTGCACCAAGAACTGAAGTCTCCGACTCGAAAC
GGTTCTCCCGTGCTCAACGGGGACACCTTCCCAACCTCAACACACTCTCC
AGGTCCAAATACAGGATCGCCTGCGTTCTCCACGTCGCCTCACGCGACTT
CCAGCGGGGCGGAGACAGACTGGGGCGCGAGTGCTCCGGCTCCGCTAGTT
GGAGAGGAAGCTGAGGGCGGTTCTACACATCCCTCAGAGGACTCCATAGC
GCAATGAGTCCAAATACAGGATCGCCTGCGTTCTCCACGTCGCCTCACGC
GACTTCCAGCGGGGCGGAGACAGACTGGGGCGCGAGTGCTCCGGCTCCGC
TAGTTGGAGAGGAAGCTGAGGGCGGTTCTACACATCCCTCAGAGGACTCC
ATAGCGCAATGA
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