mRNA_H-paniculata_contig4758.11805.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4758.11805.1
Unique NamemRNA_H-paniculata_contig4758.11805.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4758.11805.1 vs. uniprot
Match: D7FPV3_ECTSI (Glutathione S-transferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPV3_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 2.360e-27
Identity = 55/76 (72.37%), Postives = 64/76 (84.21%), Query Frame = 1 
Query:  163 SSLKLTYFDIPGPAEAVRLAFYMAGIEFEDKRISREDFMLLKPDLPTGQLPILTVDGVVLPQSAAILRYVGKIGGL 390
            SS+ LTYFDIPGPAEA+RLAFY+ GI F+D+R+SR++F  +K DLP  QLPILTVD  V PQSAAILRY GKIGGL
Sbjct:    2 SSITLTYFDIPGPAEAIRLAFYVGGIPFKDRRVSRQEFAKIKRDLPFAQLPILTVDDEVFPQSAAILRYAGKIGGL 77
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BLAST of mRNA_H-paniculata_contig4758.11805.1 vs. uniprot
Match: A0A8K1CHR0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CHR0_PYTOL)

HSP 1 Score: 110 bits (275), Expect = 3.950e-25
Identity = 51/78 (65.38%), Postives = 61/78 (78.21%), Query Frame = 1 
Query:  157 LPSSLKLTYFDIPGPAEAVRLAFYMAGIEFEDKRISREDFMLLKPDLPTGQLPILTVDGVVLPQSAAILRYVGKIGGL 390
            + S +KLTYFD PG AE  RLAF MAGI FED+R+  EDF  +KP LP GQ+P+LTVDGVV PQS A+ RYVG++GGL
Sbjct:    1 MSSQIKLTYFDSPGRAELTRLAFVMAGIAFEDERVKHEDFAPVKPTLPLGQVPVLTVDGVVYPQSMAMARYVGRLGGL 78
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BLAST of mRNA_H-paniculata_contig4758.11805.1 vs. uniprot
Match: A0A2P4WXS9_9STRA (Glutathione S-transferase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WXS9_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.720e-21
Identity = 50/81 (61.73%), Postives = 64/81 (79.01%), Query Frame = 1 
Query:  148 MSTLPSSLKLTYFDIPGPAEAVRLAFYMAGIEFEDKRISREDFMLLKPDLPTGQLPILTVDGVVLPQSAAILRYVGKIGGL 390
            M T PS +KLTYF+I G AE  RLAFY+ G+ FEDKR+SR++F+ LK  LP GQ+P+L VDG VL Q++AILRY G++GGL
Sbjct:    1 MPTFPS-IKLTYFNIAGRAETSRLAFYVGGVPFEDKRLSRDEFIALKGSLPLGQVPVLEVDGQVLTQTSAILRYAGRLGGL 80
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BLAST of mRNA_H-paniculata_contig4758.11805.1 vs. uniprot
Match: B1N8E8_9PHAE (Glutathione S-transferase 3 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B1N8E8_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.730e-21
Identity = 47/74 (63.51%), Postives = 57/74 (77.03%), Query Frame = 1 
Query:  169 LKLTYFDIPGPAEAVRLAFYMAGIEFEDKRISREDFMLLKPDLPTGQLPILTVDGVVLPQSAAILRYVGKIGGL 390
            L LTYFDIPG AE +R A   +G E+EDKR++ E+F ++KP LP GQLP+L VDG  LPQS  ILRYVGK+GGL
Sbjct:    5 LVLTYFDIPGAAEPIRWALEQSGQEWEDKRLTGEEFGVVKPSLPNGQLPVLEVDGYTLPQSMTILRYVGKLGGL 78
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BLAST of mRNA_H-paniculata_contig4758.11805.1 vs. uniprot
Match: A0A6A3JH87_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3JH87_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 3.420e-20
Identity = 48/81 (59.26%), Postives = 59/81 (72.84%), Query Frame = 1 
Query:  148 MSTLPSSLKLTYFDIPGPAEAVRLAFYMAGIEFEDKRISREDFMLLKPDLPTGQLPILTVDGVVLPQSAAILRYVGKIGGL 390
            MS  P+ LKL+YF   G AEA RLAFY+ G+ FEDKR+S E F  +KP LP GQ+P L VDG V+ Q+ AILRY G++GGL
Sbjct:    1 MSAFPA-LKLSYFGFAGRAEAARLAFYVGGVPFEDKRLSHEQFADIKPSLPLGQVPALEVDGEVMTQTYAILRYAGRLGGL 80
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BLAST of mRNA_H-paniculata_contig4758.11805.1 vs. uniprot
Match: A0A3R7JBZ1_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JBZ1_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 4.460e-20
Identity = 51/81 (62.96%), Postives = 58/81 (71.60%), Query Frame = 1 
Query:  148 MSTLPSSLKLTYFDIPGPAEAVRLAFYMAGIEFEDKRISREDFMLLKPDLPTGQLPILTVDGVVLPQSAAILRYVGKIGGL 390
            MS  PS +KLTYF   G AEA RLAFY+ G+ FED+RIS E F   K  LP GQLP+L VDG VL QS AILRY G++GGL
Sbjct:    1 MSPFPS-IKLTYFSFGGRAEAARLAFYIGGVPFEDERISYEAFGAKKESLPLGQLPVLEVDGEVLTQSNAILRYAGRLGGL 80
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BLAST of mRNA_H-paniculata_contig4758.11805.1 vs. uniprot
Match: H3GNU7_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GNU7_PHYRM)

HSP 1 Score: 100 bits (250), Expect = 5.270e-20
Identity = 46/75 (61.33%), Postives = 57/75 (76.00%), Query Frame = 1 
Query:  166 SLKLTYFDIPGPAEAVRLAFYMAGIEFEDKRISREDFMLLKPDLPTGQLPILTVDGVVLPQSAAILRYVGKIGGL 390
            ++KLTYF+  G AEA RLAFY+ G+ FED R+SR+ F  LK  LP GQLP+L VDG V  QS+AILRY G++GGL
Sbjct:    6 TIKLTYFNFTGRAEAARLAFYLGGVPFEDNRMSRDQFSALKTSLPLGQLPVLEVDGEVFTQSSAILRYAGRLGGL 80
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BLAST of mRNA_H-paniculata_contig4758.11805.1 vs. uniprot
Match: A0A0W8CR81_PHYNI (Glutathione S-transferase 1 n=9 Tax=Phytophthora TaxID=4783 RepID=A0A0W8CR81_PHYNI)

HSP 1 Score: 100 bits (249), Expect = 7.180e-20
Identity = 50/81 (61.73%), Postives = 61/81 (75.31%), Query Frame = 1 
Query:  148 MSTLPSSLKLTYFDIPGPAEAVRLAFYMAGIEFEDKRISREDFMLLKPDLPTGQLPILTVDGVVLPQSAAILRYVGKIGGL 390
            M+  PS +KLTYF+  G AE VRLA Y+ GI FEDKR+SRE+F  LK   P GQ+P+L VDG VL Q+ AILRYVG++GGL
Sbjct:    1 MAAFPS-IKLTYFNFGGRAEHVRLALYIGGIPFEDKRLSREEFGALKSSFPLGQVPVLEVDGQVLTQTDAILRYVGRLGGL 80
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BLAST of mRNA_H-paniculata_contig4758.11805.1 vs. uniprot
Match: A0A6A3RLV1_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3RLV1_9STRA)

HSP 1 Score: 100 bits (249), Expect = 7.180e-20
Identity = 48/81 (59.26%), Postives = 60/81 (74.07%), Query Frame = 1 
Query:  148 MSTLPSSLKLTYFDIPGPAEAVRLAFYMAGIEFEDKRISREDFMLLKPDLPTGQLPILTVDGVVLPQSAAILRYVGKIGGL 390
            MS  P+ LKL+YF   G AEA RLAFY+ G+ FEDKR+S E F  +KP LP GQ+P+L VDG V+ Q+ AILRY G++GGL
Sbjct:    1 MSAFPA-LKLSYFGFAGRAEAARLAFYVGGVPFEDKRLSHEQFADIKPSLPLGQVPVLEVDGEVMTQTYAILRYAGRLGGL 80
[Close]
BLAST of mRNA_H-paniculata_contig4758.11805.1 vs. uniprot
Match: F1LBG7_ASCSU (Glutathione S-transferase 1 n=1 Tax=Ascaris suum TaxID=6253 RepID=F1LBG7_ASCSU)

HSP 1 Score: 93.6 bits (231), Expect = 1.120e-19
Identity = 47/76 (61.84%), Postives = 54/76 (71.05%), Query Frame = 1 
Query:  163 SSLKLTYFDIPGPAEAVRLAFYMAGIEFEDKRISREDFMLLKPDLPTGQLPILTVDGVVLPQSAAILRYVG-KIGG 387
            S  KLTYF+I G  E  RL F+ AG+EFED R+SRED+  LKP  P GQLP+L VDG VL QS AI RY+G K GG
Sbjct:    2 SQYKLTYFNIRGLGEGARLIFHQAGVEFEDNRLSREDWPSLKPSTPFGQLPLLEVDGEVLAQSTAIFRYLGRKFGG 77
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4758.11805.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPV3_ECTSI2.360e-2772.37Glutathione S-transferase n=2 Tax=Ectocarpus TaxID... [more]
A0A8K1CHR0_PYTOL3.950e-2565.38Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2P4WXS9_9STRA1.720e-2161.73Glutathione S-transferase n=1 Tax=Phytophthora pal... [more]
B1N8E8_9PHAE1.730e-2163.51Glutathione S-transferase 3 n=1 Tax=Laminaria digi... [more]
A0A6A3JH87_9STRA3.420e-2059.26Uncharacterized protein n=1 Tax=Phytophthora fraga... [more]
A0A3R7JBZ1_9STRA4.460e-2062.96Uncharacterized protein (Fragment) n=2 Tax=Phytoph... [more]
H3GNU7_PHYRM5.270e-2061.33Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A0W8CR81_PHYNI7.180e-2061.73Glutathione S-transferase 1 n=9 Tax=Phytophthora T... [more]
A0A6A3RLV1_9STRA7.180e-2059.26Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
F1LBG7_ASCSU1.120e-1961.84Glutathione S-transferase 1 n=1 Tax=Ascaris suum T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4758contigH-paniculata_contig4758:1979..3449 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.8
Seed ortholog evalue7.6e-20
Seed eggNOG ortholog4792.ETI37469
KEGG rclassRC00004,RC00069,RC00672,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944
KEGG koko:K00799,ko:K04097
KEGG TC1.A.12.2.2,1.A.12.3.2
KEGG ReactionR02266,R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905
KEGG Pathwayko00480,ko00590,ko00980,ko00982,ko00983,ko01100,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00590,map00980,map00982,map00983,map01100,map01524,map05200,map05204,map05225,map05418
Hectar predicted targeting categoryother localisation
GOsGO:0008150,GO:0010033,GO:0014070,GO:0042221,GO:0042493,GO:0045472,GO:0046677,GO:0050896,GO:0097327,GO:1901654,GO:1901700,GO:1904643
EggNOG free text desc.Glutathione S-transferase, C-terminal domain
EggNOG OGs3QDNM@4776,KOG1695@1,KOG1695@2759
EC2.5.1.18,5.3.99.2
COG Functional cat.O
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000
Exons2
Model size1096
Cds size246
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4758.11805.1prot_H-paniculata_contig4758.11805.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4758 2682..3302 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930412.2622125-UTR-H-paniculata_contig4758:1978..26811622930412.2622125-UTR-H-paniculata_contig4758:1978..2681Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4758 1979..2681 -
1691481280.3055117-UTR-H-paniculata_contig4758:1978..26811691481280.3055117-UTR-H-paniculata_contig4758:1978..2681Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4758 1979..2681 -
1622930412.3104033-UTR-H-paniculata_contig4758:3302..34491622930412.3104033-UTR-H-paniculata_contig4758:3302..3449Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4758 3303..3449 -
1691481280.3411274-UTR-H-paniculata_contig4758:3302..34491691481280.3411274-UTR-H-paniculata_contig4758:3302..3449Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4758 3303..3449 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930412.2771018-CDS-H-paniculata_contig4758:2681..27821622930412.2771018-CDS-H-paniculata_contig4758:2681..2782Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4758 2682..2782 -
1691481280.3168926-CDS-H-paniculata_contig4758:2681..27821691481280.3168926-CDS-H-paniculata_contig4758:2681..2782Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4758 2682..2782 -
1622930412.290346-CDS-H-paniculata_contig4758:3157..33021622930412.290346-CDS-H-paniculata_contig4758:3157..3302Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4758 3158..3302 -
1691481280.3270025-CDS-H-paniculata_contig4758:3157..33021691481280.3270025-CDS-H-paniculata_contig4758:3157..3302Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4758 3158..3302 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4758.11805.1

>prot_H-paniculata_contig4758.11805.1 ID=prot_H-paniculata_contig4758.11805.1|Name=mRNA_H-paniculata_contig4758.11805.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=82bp
MSTLPSSLKLTYFDIPGPAEAVRLAFYMAGIEFEDKRISREDFMLLKPDL
PTGQLPILTVDGVVLPQSAAILRYVGKIGGL*
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mRNA from alignment at H-paniculata_contig4758:1979..3449-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4758.11805.1 ID=mRNA_H-paniculata_contig4758.11805.1|Name=mRNA_H-paniculata_contig4758.11805.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1471bp|location=Sequence derived from alignment at H-paniculata_contig4758:1979..3449- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTTCACCGCATGGCCAGCCTGCATCCATTTTCCCTCTTGAAATAAATTT
CTGGCAATGAAGCTTGACTTGTTAGATAACTATTAGCTCGAGCGAGGCAG
AAGATTTAAGGAAGGGTGCAATTGGTTTGCAGCCGACAGCTTCTGTAATG
TCTACCCTCCCGTCTTCTCTCAAGCTCACATATTTTGACATACCGGGTCC
TGCCGAAGCTGTGAGATTGGCCTTCTATATGGCTGGCATTGAGTTCGAGG
ACAAGCGAATATCGCGCGAAGACTTCATGTTATTGAAGCCAGGTGAGACC
CAAGAGGTCCCTCAACGCACTCGATCGCCGAATATATGTGATATTGACAG
ACAATGTCAGAGGATCGTGACCGGAGGCAGAACGTAATTCTCCGACGGCC
AGATTTTAGCTGGGTTCGCATATGAAATTTTTCCATCAGCACATCGTCAT
CACTGACCTGTCAGGCAGTTTGGCGCACTGGTCAACCGCGTCTTCGTGTG
AATGAACTTACTGAATAATGTGAGAAAAATGGAGAATATCCCTCCTCCCT
TTCCGCCTCCACACTCTCGACCCTGTACGATAATGCGCCGACACTCATGT
CTCTTGTACTTGCACTACTCGTACTGCTGCACTGGCTCTATTGGCTGTTC
GTCGTGTGTGAATGCAGATCTACCTACTGGTCAGCTACCTATTCTCACAG
TCGATGGAGTGGTGCTCCCACAGAGCGCGGCCATTCTACGCTATGTTGGG
AAAATTGGCGGTCTGTGAGTGCGATGACCTGCTGTGACAACTACTTGTTG
TTTGTATCTTGACAGGGGACGGCTAAATAGGTTAATCCTCAGAGCGGAGA
GATTAGCACACGTTTCATTAGATTCCTGCGCCCTCTTCAACTCAGCCCTG
AGACATGAAGCTATATCGGAAGACAAGAGAAGAAGGGGAGGAAAGCGTGA
TAAGCGTCACGAATTAGTGGGCACTACGCACAAAGGTTATGGATACAACA
GTATATTGGTGGGATTTAGAGTGTAACTTCACAATCAGAGTGCAGCCTTG
GAAATCGCACAGCACCGTCAGTTCGAAATGTTAAGAGTTAGACCTCACGG
AGCCACTTGAATGAAAGCTCCGGCTTATGCGAGGATGAATATAACATTAC
AAACGCCCCCGGTTGAAGTATGGTGGAGGTAGCGCTGAAACAGAACAATT
CCACCTGTTCTGAAAGCTTGATATCGATTAATCCTTCATGACGCTGGTAC
AAATTTGAAATAACAACTTTTGATGGGAGAGCCTGACTGACCCAGCAAGA
GTATCGGCGGGATTGCATAGGTCAGGGCTTTCATTCGCGCCGCCCTATGA
AGTCCAAAGCTTCGAGCTGACTACGCTGTGCGAGGTGTGCGCGTCTTTAC
GATTGCATTCTGATTGTTAAGTTACACTCTGAATCTCACCAATATACTGT
TATACACATGTCTGTCTGCAA
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Coding sequence (CDS) from alignment at H-paniculata_contig4758:1979..3449-

>mRNA_H-paniculata_contig4758.11805.1 ID=mRNA_H-paniculata_contig4758.11805.1|Name=mRNA_H-paniculata_contig4758.11805.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at H-paniculata_contig4758:1979..3449- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTACCCTCCCGTCTTCTCTCAAGCTCACATATTTTGACATACCGGG
TCCTGCCGAAGCTGTGAGATTGGCCTTCTATATGGCTGGCATTGAGTTCG
AGGACAAGCGAATATCGCGCGAAGACTTCATGTTATTGAAGCCAGATGTC
TACCCTCCCGTCTTCTCTCAAGCTCACATATTTTGACATACCGGGTCCTG
CCGAAGCTGTGAGATTGGCCTTCTATATGGCTGGCATTGAGTTCGAGGAC
AAGCGAATATCGCGCGAAGACTTCATGTTATTGAAGCCAGATCTACCTAC
TGGTCAGCTACCTATTCTCACAGTCGATGGAGTGGTGCTCCCACAGAGCG
CGGCCATTCTACGCTATGTTGGGAAAATTGGCGGTCTGTGAATCTACCTA
CTGGTCAGCTACCTATTCTCACAGTCGATGGAGTGGTGCTCCCACAGAGC
GCGGCCATTCTACGCTATGTTGGGAAAATTGGCGGTCTGTGA
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