mRNA_H-paniculata_contig1184.1180.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig1184.1180.1
Unique Name	mRNA_H-paniculata_contig1184.1180.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig1184.1180.1 vs. uniprot
Match: D7FNL6_ECTSI (J domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNL6_ECTSI)

HSP 1 Score: 458 bits (1178), Expect = 3.840e-146
Identity = 277/482 (57.47%), Postives = 333/482 (69.09%), Query Frame = 1

Query: 1099 AAPNQISADLRTKTXXXXXXXXXXXXXXXAMPRGIRVESNEGGLCPLDPEAGDPPRSGLEHNLASRLCKHATGDAPAECGRVAPRQMSEEDIEMLCSAAGTPSMPGTIQCATSAILTGLSGSDAASVCRGAGSDAPALCAAVVAHRIWSSALVDTXXXXXXXXXXXXVNSLPVMRTPTPDEIAVCRATRPRPSDLQIINLAHNGEILFPNQLMQATLEVRDQWGGNMAFESSSTVRASIALRGSNGASVNAHGRFNTTKDGVVHFSHLSFSGAGNLTLQFFIDGYDSM-----SAPLASARVIVAETEHTAFLRRCGRLFSSLACPLSAARYGEE----------CAAPEE--HVSSAVTEAVAIVFSGAVTAWDVLNCQTILAENGVQTTMV-SGRSYSLTAWIWYHPGMEELETGIGLPTREQSAWETLGVERNASGREMRRAYYRLSLLWHPDRWVRHSMHSARAQDVFEIVSEAYSWM 2490
            AAP QI AD+R +T XXXXXXXXXXXXX + PR ++ + +   +CPLDPEAG  PR G++H LA+R+C+ A  D PA C R AP +MS+ D+E+LC+A G P    T  CA + ++ G SG+ AAS+CRGA S AP  CA   AHRI  +  +  XXXXXXXXXXXX NS+     P+  E+  CR   PRPS L I +L H GE LFP+Q M ATLEV DQWGG +  +SS+ VRAS+ALRGSNGA  NAHGRFNT+  GVVHFSHLSFSG+GNLTLQFFIDG DS      + PLA+ARVIV ETEH A LRRC  +FS LACP      G              AP +    SS  TEAV+ V  GA  AW V+ CQ +L ENG+    V S  +  L A +WYHPG+E LETG GLPTR+Q AWE LGV+R+ASGRE+RRAYYR SLLWHPDRWVR+++HSARAQDVFE+V +AY WM
Sbjct:  278 AAPRQIPADVRVETCXXXXXXXXXXXXXASGPRELQGQPDWEAVCPLDPEAGRRPRRGVDHRLAARVCRDALDDKPALCARAAPLRMSDSDVEVLCAADGQPGGEETADCAAAGLMIGFSGASAASLCRGASSGAPVACAETAAHRIGEAGRLAXXXXXXXXXXXXXXNSVSGAGAPSASEVEECREAVPRPSRLHITDLGHEGETLFPDQPMHATLEVWDQWGGKIHKDSSTVVRASVALRGSNGAVANAHGRFNTSDVGVVHFSHLSFSGSGNLTLQFFIDGNDSKDVGAANVPLAAARVIVEETEHGAILRRCRAVFSRLACPWPVKGEGASGEWVSDVGMGTGAPHQVRPSSSVATEAVSTVSGGAGAAWYVMTCQQVLEENGINVAYVYSPSTEPLLALLWYHPGIETLETGAGLPTRDQPAWERLGVDRDASGRELRRAYYRQSLLWHPDRWVRYAIHSARAQDVFELVGDAYEWM 759

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BLAST of mRNA_H-paniculata_contig1184.1180.1 vs. uniprot
Match: A0A836CJW3_9STRA (J domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJW3_9STRA)

HSP 1 Score: 206 bits (523), Expect = 2.370e-52
Identity = 125/287 (43.55%), Postives = 163/287 (56.79%), Query Frame = 1

Query: 1630 TPDEIAVCRATRPRPSDLQIINLAHNGE--ILFPNQLMQATLEVRDQWGGNMAFESSSTVRASIALRGSNGASVNAHGRFNTTKDGVVHFSHLSFSGAGNLTLQFFIDGYDSMSAPLASARVIVAETEHTAFLRRCGRLFSSLACPLSAARYGEECAAPEEHVSSAVTEAVAIVFSGAVTAWDVLNCQTILAENGVQTTMVSGRSYSLTAWIWYHPGMEELETGIGLPTREQSAWETLGVERNASGREMRRAYYRLSLLWHPDRWVRHSMHSARAQDVFEIVSEAYS 2484
            T  +I  CR   P  + + +  L H GE  +L+    ++A LEV+DQWG  M ++S + VRAS+A RGSNGA +   GR N T DGVV FSHL+FS  GNLTL+F + G     A LASA + V ET+  AF R CG +  +L CP  AA      AA E + +  +   V    S     W+ + C   L   G +        +   AW+WY P +E L TG G+PT   +A E LG+   ASG ++RRAYYR SL WHPDRW RH   + RAQ VFE+VSEAY+
Sbjct:  473 TARQIEDCRGAAPVHTSIGVRELKHAGEGGVLYTGARVEAVLEVKDQWGRFMEWDSGTYVRASLAPRGSNGAFIGGAGRVNATVDGVVRFSHLTFSAPGNLTLRFDVGG-----AHLASALLRVVETKEAAFARACGAVVRALRCPSDAAA-ARRAAAAELNAADEIFALVPPPLS-----WNAIVCGGALRNQGFRVAP----GWRRAAWVWYTPAVEALATGRGVPTPLMTALERLGLGEGASGGDVRRAYYRESLRWHPDRWARHPALAERAQAVFELVSEAYA 744

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BLAST of mRNA_H-paniculata_contig1184.1180.1 vs. uniprot
Match: A0A7S2SUF7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUF7_9STRA)

HSP 1 Score: 151 bits (382), Expect = 1.520e-34
Identity = 133/411 (32.36%), Postives = 186/411 (45.26%), Query Frame = 1

Query: 1312 TGDAPAECGRVAPRQMSEEDIEMLCSAAGTPSMPGTIQCATSAILTGLSGSDAASVCRGAGSDAPALCAAVVA---HRIWSSALVDTXXXXXXXXXXXXVNSLPVM----------RTPTPDEIAVCRATRPRPSDLQIINL---AHNGEILFPNQLMQATLEVRDQWGGNMAFESSSTVRASIALRGSNGASVNAHGRFNTTKDGVVHFSHLSFSGAGNLTLQFFIDGYDSMSAPLASARVIVAETEHTAF--LRRCGRLFSSLACPL--SAARYGEECAAPEEHVSSAVTEAVA-IVFSGAVTAWDVLNCQTILAENGVQTTMVSGRSYSLTAWIWYHPGMEELETGIGLPTREQSAWETLGVERNASGREMRRAYYRLSLLWHPDRWVRHSMHSARAQDVFEIVSEAY 2481
            +G  P +C   AP   S+ DI  LC  A     P    CA SA  + L  S  A +C  + S APA CA       HR  ++A                    P            R   P  +  CR     PS +QI+ +      G+ +F    +  TL+V DQ+G  M  ++ + V A++    S GA +    R N +  GVV   +L FS  G   L F I G       +   RV+V+  E   F    +CG+ F +       S A    +  A ++H    V E V+ + +  ++ A    +C  IL E GV+ T  SG    L  W+WY P ME L+TG+GLPT     W  LG+   AS R++R+AYYR SL+WHPDRW  + +H   AQD FE++SEAY
Sbjct:  251 SGSPPMDCALTAPYGFSDSDIIALCRHAD----PRASDCARSAPPS-LPASIRARLCARSTSTAPARCAVASPFSMHRPMANAQAHKAEEPVVALCSQAAAPTPGHCASFLARQQGRELVPSLVEYCRTATATPSGVQILRMWWDTDRGDGIFAKSNVHITLQVLDQFGTPMLGDNETIVSATLDSTTSQGAMLEGI-RSNVSVAGVVELHYLRFSQDGEFDLHFGIGGNR-----VQMMRVVVSPHEDDRFGPTGKCGQEFFAKLNSFAPSFAVNSSQLVAGQDHDPLRVQEKVSYMTWPSSLEAMS--SCSRILEEAGVRVT--SGWGGDL--WVWYRPAMEALDTGVGLPTASMDFWTRLGLSSTASARDVRKAYYRQSLVWHPDRWASYPLHRRLAQDAFEVISEAY 644

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BLAST of mRNA_H-paniculata_contig1184.1180.1 vs. uniprot
Match: A0A7S2SUI0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUI0_9STRA)

HSP 1 Score: 142 bits (359), Expect = 4.730e-34
Identity = 102/291 (35.05%), Postives = 147/291 (50.52%), Query Frame = 1

Query: 1633 PDEIAVCRATRPRPSDLQIINL---AHNGEILFPNQLMQATLEVRDQWGGNMAFESSSTVRASIALRGSNGASVNAHGRFNTTKDGVVHFSHLSFSGAGNLTLQFFIDGYDSMSAPLASARVIVAETEHTAF--LRRCGRLFSSLACPL--SAARYGEECAAPEEHVSSAVTEAVA-IVFSGAVTAWDVLNCQTILAENGVQTTMVSGRSYSLTAWIWYHPGMEELETGIGLPTREQSAWETLGVERNASGREMRRAYYRLSLLWHPDRWVRHSMHSARAQDVFEIVSEAY 2481
            P  +  CR     PS +QI+ +      G+ +F    +  TL+V DQ+G  M  ++ + V A++    S GA +    R N +  GVV   +L FS  G   L F I G       +   RV+V+  E   F    +CG+ F +       S A    +  A ++H    V E V+ + +  ++ A    +C  IL E GV+ T  SG    L  W+WY P ME L+TG+GLPT     W  LG+   AS R++R+AYYR SL+WHPDRW  + +H   AQD FE++SEAY
Sbjct:    6 PSLVEYCRTATATPSGVQILRMWWDTDRGDGIFAKSNVHITLQVLDQFGTPMLGDNETIVSATLDSTTSQGAMLEGI-RSNVSVAGVVELHYLRFSQDGEFDLHFGIGGNR-----VQMMRVVVSPHEDDRFGPTGKCGQEFFAKLNSFAPSFAVNSSQLVAGQDHDPLRVQEKVSYMTWPSSLEAMS--SCSRILEEAGVRVT--SGWGGDL--WVWYRPAMEALDTGVGLPTASMDFWTRLGLSSTASARDVRKAYYRQSLVWHPDRWASYPLHRRLAQDAFEVISEAY 284

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BLAST of mRNA_H-paniculata_contig1184.1180.1 vs. uniprot
Match: A0A2R5GI11_9STRA (DnaJ family protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GI11_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.240e-10
Identity = 47/108 (43.52%), Postives = 66/108 (61.11%), Query Frame = 1

Query: 2164 AWDVL--NCQTILAENGVQTTMVSGRSYSLTAWIWYHPGMEELETGIGLPTREQSAWETLGVERNASGREMRRAYYRLSLLWHPDRWVR-HSMHSARAQDVFEIVSEA 2478
            AW +L   C+  LA+ GVQ  + S +  +   ++    G  +L  GIG+PT E SA E LGVE NA+  ++R+AYYR SL WHPDRWV  H    ++A DVF+ ++ A
Sbjct: 1092 AWWLLARGCEDELADIGVQL-LRSPQPIAHGVFLHIKSGPAKLLAGIGVPTEEMSAEEILGVEANATSSQLRKAYYRASLEWHPDRWVSFHPDLQSQAADVFQRIATA 1198

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BLAST of mRNA_H-paniculata_contig1184.1180.1 vs. uniprot
Match: A0A5D6XN52_9STRA (J domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XN52_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 2.390e-9
Identity = 78/295 (26.44%), Postives = 121/295 (41.02%), Query Frame = 1

Query: 1651 CRATRPRPSDLQIINLAHNGEILFPNQLMQATLEVRDQWGGNMAFESSSTVRASIALRGSNGASVNAHGRFNTTKDGVVHF-SHLSF-SGAGNLTLQFFID-GYDSMSAPLASARVIVAETEHTAFLR------------RCGRLFSSLACPLSAARYGEECAAPEEHVSSAVTEAVAIVFSGAVTAWDVLNCQTILAENGVQTTMVSGRSYSLTAWIWYHPGMEELETGIGLPTREQSAWETLGVERNASGREMRRAYYRLSLLWHPDRWVRHSMHS--ARAQDVFEIVSEAYS 2484
            CRA  P P+ L+I  +++    L P   +   L V DQ+G  M   +   +R S+             G      D V+H  +H    +G+   T  FFI+ G   ++   A+A  +++ TE  A +R            RC  LF+ L C        +    P    +  V E   +    +    DVL C+    E+     ++   S      I  H       T   +P+   SAW  LG++  A+  ++R AY+R SL WHPD+W   S  S   RA  V+  V+ AY+
Sbjct:  585 CRAVVPVPASLEIAQVSYRCRQLVPKCRLSVQLRVHDQFGVEMQSWTGGYLRVSVTP---------TEGTAPEAGDRVLHGPTHAPIINGSAAFTDIFFIEPGEFVVTFGPAAAPTLLSITEKVARIRIHEDAQERLRSRRCRALFAQLECG------ADRTEQPGPSANDTVGEVFHLFELPSRHYLDVLGCEGFWLEHSGGMRVLGATSTRFVLAI--HHASYRFLTNARVPSAGMSAWACLGLDEGANRSQIRHAYHRKSLEWHPDKWSGASTRSLQGRAAQVYARVTLAYN 862

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BLAST of mRNA_H-paniculata_contig1184.1180.1 vs. uniprot
Match: A0A7S3MAI0_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MAI0_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.790e-7
Identity = 38/119 (31.93%), Postives = 51/119 (42.86%), Query Frame = 1

Query: 2254 WIWYHPGMEELETGIGLPTREQSAWETLGVERNASG------------------------------------------REMRRAYYRLSLLWHPDRWVRHSMHSARAQDVFEIVSEAYS 2484
            W  Y  G++ L TG+G+P  E S  E LG+  NA G                                          +E+RRAYYR SL WHPDRW    M++   Q  FE+++EAY+
Sbjct:  238 WAEYRLGVDSLWTGVGMPRLEMSPMERLGLSTNAEGLIVSDHPDNDKXXXXXXXXXXXXXXXXSNALGNTRKRERAMQKEIRRAYYRKSLQWHPDRWAGMGMYALPVQAAFELINEAYN 356

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BLAST of mRNA_H-paniculata_contig1184.1180.1 vs. uniprot
Match: K3WQH3_GLOUD (J domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WQH3_GLOUD)

HSP 1 Score: 64.7 bits (156), Expect = 5.980e-7
Identity = 108/448 (24.11%), Postives = 165/448 (36.83%), Query Frame = 1

Query: 1282 NLASRLCKHATGDAPAECGRVAPRQMSEEDIEML-----------CSAAGTPSMPGTIQ--------------CATSAILTGLSGSDAASVCRGAGSDAPALCAAVVAH--RI-WSSAL---VDTXXXXXXXXXXXXVNSLPVMRTPTPDEIAVCRATRPRPSDLQIINLAHNGEILFPNQLMQATLEVRDQWGGNMAFESSSTVR--ASIALRGSNGASVNAHGRFNTTK------DGVVHFSHLSFSGAGNLTLQFFIDGYDSMSA-----PLASARVIVAETEHTAFLR--RCGRLFSSLACPLSAARYGEECAAPEEHVSSAVTEAVAIVFSGAVTAWDVLNCQTILAENGVQTTMVSGRSYSLTAWIWYHPGMEELETGIGLPTREQSAWETLGVERNASGREMRRAYYRLSLLWHPDRWVRHS--MHSARAQDVFEIVSEAY 2481
            N  S +C  A   APA+C R  P   ++    M            C+      +  T++                  A   G+  S+  ++CR A SD  A CA  +A   RI W +A    VD             V    ++   T   I  CR     P+  +I  +++    L PN L+  +L V DQ+G  M   +   V   A+     SN   + + GR    +      +G   F  +SF+ AG   + F      S S           R+ + E +  A LR  RC  LF+   C         +  A   HV                   D ++C+    E+          S  L   I  H       T   +P  E S W  LG+  +A+  ++RRAY+R SL WHPD+W      M  A+A+ ++ +++ AY
Sbjct:  256 NFGSFICASAQSIAPAKCYRATPSNFADSSKAMXXXXXXXXXXXXCALYHATRITTTLEKXXXXXXXXXXXXXXXVMAAPFGMKSSELIALCRMATSDFSAKCAQSIATSARIPWVTAAELCVDATSVTPAHCLAQHVRRRALI---TRKLIQECRYAVATPASTEIAQVSYQCRELIPNCLITISLRVLDQFGEEMPAWTGGYVHIAATPTTDTSNTEHMTSEGRILVGQSHALIVNGTAVFKDISFAEAGEFIITFRPPSASSSSLIGVFLEEKIVRIRIHE-DKLAQLRTKRCKALFARFQC-------SRDDTADPFHVLDLSNRFYL----------DAMSCEAFWHEHTGGLRFQGTTSQRLLYVI--HRASYHFLTDASIPHAEMSPWACLGLASSANRSQIRRAYHRKSLEWHPDKWSSADTIMLRAQAEKIYALITHAY 680

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BLAST of mRNA_H-paniculata_contig1184.1180.1 vs. uniprot
Match: A0A6D2HZ99_9BRAS (J domain-containing protein n=4 Tax=Coluteocarpeae TaxID=1394505 RepID=A0A6D2HZ99_9BRAS)

HSP 1 Score: 59.7 bits (143), Expect = 1.300e-6
Identity = 27/63 (42.86%), Postives = 40/63 (63.49%), Query Frame = 1

Query: 2296 IGLPTREQSAWETLGVERNASGREMRRAYYRLSLLWHPDRWVRHSMHSARAQDVFEIVSEAYS 2484
             G+     S +ETLGV  N+S  ++RRAY +L+++WHPDRW +    S  A+  F+ + EAYS
Sbjct:    3 FGMKQTSPSYYETLGVAVNSSAEQIRRAYRKLAMIWHPDRWTKDPSCSGEAKRRFQQIQEAYS 65

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BLAST of mRNA_H-paniculata_contig1184.1180.1 vs. uniprot
Match: M4CUQ8_BRARP (J domain-containing protein n=6 Tax=Brassica TaxID=3705 RepID=M4CUQ8_BRARP)

HSP 1 Score: 58.9 bits (141), Expect = 2.130e-6
Identity = 25/62 (40.32%), Postives = 40/62 (64.52%), Query Frame = 1

Query: 2299 GLPTREQSAWETLGVERNASGREMRRAYYRLSLLWHPDRWVRHSMHSARAQDVFEIVSEAYS 2484
            G+     S ++ LGV  N+S  ++RRAYY+L++ WHPDRW +  + +  A+  F+ + EAYS
Sbjct:    4 GIKATSPSYYDFLGVAVNSSAEQIRRAYYKLAMKWHPDRWTKDPLRAGEAKRRFQQIQEAYS 65

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig1184.1180.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig1184.1180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FNL6_ECTSI	3.840e-146	57.47	J domain-containing protein n=2 Tax=Ectocarpus Tax...	[more]
A0A836CJW3_9STRA	2.370e-52	43.55	J domain-containing protein n=1 Tax=Tribonema minu...	[more]
A0A7S2SUF7_9STRA	1.520e-34	32.36	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
A0A7S2SUI0_9STRA	4.730e-34	35.05	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
A0A2R5GI11_9STRA	1.240e-10	43.52	DnaJ family protein n=1 Tax=Hondaea fermentalgiana...	[more]
A0A5D6XN52_9STRA	2.390e-9	26.44	J domain-containing protein n=1 Tax=Pythium brassi...	[more]
A0A7S3MAI0_9STRA	1.790e-7	31.93	Hypothetical protein n=2 Tax=Spumella elongata Tax...	[more]
K3WQH3_GLOUD	5.980e-7	24.11	J domain-containing protein n=1 Tax=Globisporangiu...	[more]
A0A6D2HZ99_9BRAS	1.300e-6	42.86	J domain-containing protein n=4 Tax=Coluteocarpeae...	[more]
M4CUQ8_BRARP	2.130e-6	40.32	J domain-containing protein n=6 Tax=Brassica TaxID...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig1184	contig	H-paniculata_contig1184:20717..24136 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	460.3
Seed ortholog evalue	1.9e-126
Seed eggNOG ortholog	2880.D7FNL6
Hectar predicted targeting category	other localisation
EggNOG free text desc.	DnaJ molecular chaperone homology domain
EggNOG OGs	29M4M@1,2RUDY@2759
Ec32 ortholog description	DnaJ domain
Ec32 ortholog	Ec-01_005020.1
COG Functional cat.	O
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Exons	3
Model size	2490
Cds size	2490
Stop	0
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig1184.1180.1	prot_H-paniculata_contig1184.1180.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig1184 20717..24136 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928894.692439-CDS-H-paniculata_contig1184:20716..22556	1622928894.692439-CDS-H-paniculata_contig1184:20716..22556	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig1184 20717..22556 -
1691480659.6297486-CDS-H-paniculata_contig1184:20716..22556	1691480659.6297486-CDS-H-paniculata_contig1184:20716..22556	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig1184 20717..22556 -
1622928894.7361786-CDS-H-paniculata_contig1184:22726..23088	1622928894.7361786-CDS-H-paniculata_contig1184:22726..23088	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig1184 22727..23088 -
1691480659.6407819-CDS-H-paniculata_contig1184:22726..23088	1691480659.6407819-CDS-H-paniculata_contig1184:22726..23088	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig1184 22727..23088 -
1622928894.7587628-CDS-H-paniculata_contig1184:23848..24136	1622928894.7587628-CDS-H-paniculata_contig1184:23848..24136	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig1184 23849..24136 -
1691480659.6501675-CDS-H-paniculata_contig1184:23848..24136	1691480659.6501675-CDS-H-paniculata_contig1184:23848..24136	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig1184 23849..24136 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig1184:20717..24136-
coding sequence from alignment at H-paniculata_contig1184:20717..24136-

protein sequence of mRNA_H-paniculata_contig1184.1180.1

>prot_H-paniculata_contig1184.1180.1 ID=prot_H-paniculata_contig1184.1180.1|Name=mRNA_H-paniculata_contig1184.1180.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=830bp
MFVAATPTECSRLAPFFLAVDQRIALCKNARTSAPADCARKAHESPDGLT
DFFVLELCTGVTTLGPAKCVASLSRAVTKTLSPELRVELCKNARSDAPAR
CMEQLPRSKRHAPLVVDVCKEALSIAPADCLGLLPRATPDEVAVRLCSRA
KTAGPAICTGFRGLLIQYGWDLAARLCQDARGQGPAECFHRTSLVTKLST
DDRIELCIDATNDAPARCIGDIRDQHLSSNERVALCRGSSSTAPAQCVAH
VPPTVGTGHRVALCQGASEQHSLAPALCLKKILQYVPSSFGAPLCQGVSD
SSAAECANVARHVIKDHFVLLALCRGASSTLPAECAKAAIRVGAEQHLVA
DLCAHTTSTAPASCFSAAPNQISADLRTKTCANALSVAPALCLAAAMPRG
IRVESNEGGLCPLDPEAGDPPRSGLEHNLASRLCKHATGDAPAECGRVAP
RQMSEEDIEMLCSAAGTPSMPGTIQCATSAILTGLSGSDAASVCRGAGSD
APALCAAVVAHRIWSSALVDTCVGATNDAPARCVNSLPVMRTPTPDEIAV
CRATRPRPSDLQIINLAHNGEILFPNQLMQATLEVRDQWGGNMAFESSST
VRASIALRGSNGASVNAHGRFNTTKDGVVHFSHLSFSGAGNLTLQFFIDG
YDSMSAPLASARVIVAETEHTAFLRRCGRLFSSLACPLSAARYGEECAAP
EEHVSSAVTEAVAIVFSGAVTAWDVLNCQTILAENGVQTTMVSGRSYSLT
AWIWYHPGMEELETGIGLPTREQSAWETLGVERNASGREMRRAYYRLSLL
WHPDRWVRHSMHSARAQDVFEIVSEAYSWM

mRNA from alignment at H-paniculata_contig1184:20717..24136-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig1184.1180.1 ID=mRNA_H-paniculata_contig1184.1180.1|Name=mRNA_H-paniculata_contig1184.1180.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3420bp|location=Sequence derived from alignment at H-paniculata_contig1184:20717..24136- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCGTCGCCGCAACACCGACAGAGTGCTCTCGACTAGCACCTTTTTT
CTTGGCGGTGGACCAACGTATAGCTCTATGTAAAAATGCGAGAACCTCTG
CTCCTGCAGACTGTGCTCGAAAAGCACATGAGAGTCCAGACGGTCTCACC
GACTTTTTTGTGCTTGAGCTGTGCACTGGTGTGACGACGCTCGGCCCAGC
AAAGTGCGTGGCAAGCTTGTCGAGGGCCGTGACGAAGACGTTGTCGCCGG
AGCTCCGCGTGGAGCTCTGTAAAAATGCACGGTCGGATGTAAGTTGGACA
CCTTCCGTTCTTACCTGCTGAGGGCCGTTTTAAGGGCCACTCTAAACGAG
GTCATTTCTTGTCCGATTTTTCCGATATTTTCGTTTCCCAAAAAACGTAA
ATCGCGATAGTGCGCTCAGTATTGAGGGAAATGTACCGAAACACTTTACG
GCATGTTGCCCTCATACGTCTGGTGCACTTTGGTCACAGTCGTCAAGTTG
TTCAGCTCGGTATCGTAATTTCTAATTTTCGGAAAACGGAAGAATCGGAA
AAACGGACAAAAAATGGCCTCGTTTAGAACATCCTTAAACGAGGCCGTTT
CTTGTCCGATATTTTCCGTTTTTTCGTTTTCCGAAAAATGGAAATCGCGA
TGTAGCGACCTCAGAATTGAGGGAAAGGTGCCGAAATACTTGCCCTCATG
CGCCTGGTGCACTTTGGTTACAGTCTTCAACTTGTACATTGTTCACCTCG
CTATCACGATATCCATTATTAGAAAAACCGAAAACGGGAAAAATCGGACC
TAACACGGCCTCATGTAGAACATGCCTGAGCAGAGACCTCCTTAGGAAGT
GCAGAGGAATGTTTTTTTTGCTGTCACTTGATCCTACCGCTTCAAGGGTA
GGGCAGAGCTCCGCACAGTCCTTACATCATTCATTGGATCGGTCGATTGT
GGTCTTCTTCGCTGTAGGATACAGCTAATAGGTCTATATTTATTTCTGGC
AACTCCTTTCCCTCGTGATCAAATGTGACTGTGATGAATCCTGATTAGGC
CCCTGCTCGATGTATGGAGCAATTGCCACGCTCTAAACGACACGCGCCAC
TGGTCGTGGACGTGTGCAAAGAAGCCTTGAGCATAGCACCGGCCGACTGC
CTTGGACTGCTTCCTCGGGCAACGCCGGATGAGGTTGCAGTACGGCTTTG
TAGTAGGGCAAAGACAGCAGGGCCAGCAATTTGCACAGGCTTTCGCGGAC
TGCTAATCCAGTATGGGTGGGATCTGGCAGCAAGGCTCTGTCAAGATGCC
CGTGGTCAAGGACCGGCCGAGTGTTTTCATCGAACGTCACTGGTCACAAA
ACTGTCGACTGATGATCGTATAGAGCTCTGCATTGACGCCACCAATGATG
CCCCGGCAAGGTAATCAAAGCAGGTTAAAATAGGGAATCTTCCAAAGATA
TGAACAGCGCTCGCAACACCTGTTCGTTCCACGATCGGCCCCTGAGGACC
GAACGTCTTCTTCATTTTCCTGTAATCAAAACAATGCAGTGATGACTTGC
GTTTGACGCTATTTCCAACGCGTTTTCCAGGTGCATTGGTGATATACGAG
ACCAACATCTAAGCTCCAATGAAAGGGTAGCATTGTGTCGCGGTTCATCC
AGCACCGCTCCCGCACAATGTGTCGCCCACGTACCACCTACTGTGGGAAC
CGGCCATCGTGTGGCGCTGTGCCAAGGTGCTTCCGAGCAACACTCTTTAG
CCCCCGCGCTTTGTCTCAAGAAGATATTGCAATACGTTCCGTCGTCATTC
GGTGCTCCCCTGTGCCAAGGGGTCAGCGACTCCAGCGCAGCAGAATGCGC
CAACGTAGCCCGCCACGTCATTAAGGATCACTTTGTCCTACTGGCGCTAT
GCAGAGGGGCATCATCTACTCTCCCTGCTGAATGCGCCAAAGCGGCTATT
CGGGTGGGAGCAGAACAGCACCTGGTCGCCGATCTATGTGCACATACAAC
TTCGACCGCTCCCGCATCATGTTTTTCTGCTGCACCCAATCAAATATCGG
CAGACTTGCGCACGAAAACATGTGCAAACGCGTTGTCGGTGGCGCCGGCT
CTATGTCTTGCAGCAGCTATGCCGCGCGGCATTCGCGTCGAGTCTAATGA
AGGTGGCCTCTGCCCGTTGGACCCTGAGGCTGGAGATCCACCGCGAAGTG
GTCTCGAGCACAATTTAGCTTCTCGGTTGTGCAAACATGCAACTGGTGAT
GCCCCCGCGGAATGTGGACGAGTGGCCCCACGCCAAATGAGCGAGGAAGA
TATCGAGATGCTGTGTAGTGCTGCCGGAACGCCAAGCATGCCAGGAACAA
TTCAGTGTGCTACCTCAGCTATACTGACGGGGCTCTCTGGCTCTGACGCT
GCCTCGGTCTGTCGTGGAGCTGGCTCTGATGCACCCGCTCTATGCGCAGC
TGTGGTAGCACATCGAATATGGTCAAGCGCGCTGGTCGATACATGTGTCG
GTGCAACAAACGACGCTCCTGCTCGATGTGTAAACTCGCTCCCAGTGATG
AGGACTCCAACACCTGACGAAATAGCAGTGTGTCGAGCAACTCGCCCCCG
GCCATCTGATCTACAGATCATAAATCTTGCGCATAACGGCGAGATATTGT
TTCCTAATCAACTGATGCAAGCTACTCTTGAAGTCAGGGATCAGTGGGGA
GGAAATATGGCCTTCGAAAGTTCGAGCACTGTACGCGCCTCCATCGCACT
CCGGGGCTCCAATGGCGCGTCAGTGAATGCCCACGGACGTTTCAACACCA
CCAAAGACGGCGTGGTCCACTTCTCGCACTTATCCTTCAGCGGTGCCGGC
AATCTCACTTTACAGTTCTTCATTGACGGATATGACAGCATGTCCGCTCC
TTTGGCGTCCGCGCGAGTAATTGTGGCAGAAACAGAACACACCGCTTTTC
TTCGGCGATGCGGGCGTCTATTTTCGTCCCTGGCATGCCCGCTATCGGCT
GCGAGATATGGTGAGGAGTGTGCCGCACCCGAAGAGCATGTATCCTCGGC
CGTGACTGAAGCAGTTGCCATCGTTTTTTCCGGAGCGGTTACGGCATGGG
ACGTGCTAAACTGCCAAACTATTTTGGCGGAGAATGGCGTGCAGACGACG
ATGGTATCTGGAAGGTCATATTCGCTCACCGCTTGGATTTGGTATCACCC
TGGTATGGAGGAGTTGGAAACGGGCATAGGATTACCGACGCGAGAGCAGT
CCGCGTGGGAAACGCTTGGGGTGGAAAGGAATGCCAGCGGGCGCGAGATG
CGGCGGGCCTATTATCGCCTGTCGCTGCTGTGGCACCCTGATCGCTGGGT
ACGCCACTCTATGCATTCGGCCCGCGCTCAAGATGTTTTTGAGATTGTGA
GCGAGGCTTACTCGTGGATG

Coding sequence (CDS) from alignment at H-paniculata_contig1184:20717..24136-

>mRNA_H-paniculata_contig1184.1180.1 ID=mRNA_H-paniculata_contig1184.1180.1|Name=mRNA_H-paniculata_contig1184.1180.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4980bp|location=Sequence derived from alignment at H-paniculata_contig1184:20717..24136- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCGTCGCCGCAACACCGACAGAGTGCTCTCGACTAGCACCTTTTTT
CTTGGCGGTGGACCAACGTATAGCTCTATGTAAAAATGCGAGAACCTCTG
CTCCTGCAGACTGTGCTCGAAAAGCACATGAGAGTCCAGACGGTCTCACC
GACTTTTTTGTGCTTGAGCTGTGCACTGGTGTGACGACGCTCGGCCCAGC
AAAGTGCGTGGCAAGCTTGTCGAGGGCCGTGACGAAGACGTTGTCGCCGG
AGCTCCGCGTGGAGCTCTGTAAAAATGCACGGTCGGATATGTTCGTCGCC
GCAACACCGACAGAGTGCTCTCGACTAGCACCTTTTTTCTTGGCGGTGGA
CCAACGTATAGCTCTATGTAAAAATGCGAGAACCTCTGCTCCTGCAGACT
GTGCTCGAAAAGCACATGAGAGTCCAGACGGTCTCACCGACTTTTTTGTG
CTTGAGCTGTGCACTGGTGTGACGACGCTCGGCCCAGCAAAGTGCGTGGC
AAGCTTGTCGAGGGCCGTGACGAAGACGTTGTCGCCGGAGCTCCGCGTGG
AGCTCTGTAAAAATGCACGGTCGGATGCCCCTGCTCGATGTATGGAGCAA
TTGCCACGCTCTAAACGACACGCGCCACTGGTCGTGGACGTGTGCAAAGA
AGCCTTGAGCATAGCACCGGCCGACTGCCTTGGACTGCTTCCTCGGGCAA
CGCCGGATGAGGTTGCAGTACGGCTTTGTAGTAGGGCAAAGACAGCAGGG
CCAGCAATTTGCACAGGCTTTCGCGGACTGCTAATCCAGTATGGGTGGGA
TCTGGCAGCAAGGCTCTGTCAAGATGCCCGTGGTCAAGGACCGGCCGAGT
GTTTTCATCGAACGTCACTGGTCACAAAACTGTCGACTGATGATCGTATA
GAGCTCTGCATTGACGCCACCAATGATGCCCCGGCAAGGCCCCTGCTCGA
TGTATGGAGCAATTGCCACGCTCTAAACGACACGCGCCACTGGTCGTGGA
CGTGTGCAAAGAAGCCTTGAGCATAGCACCGGCCGACTGCCTTGGACTGC
TTCCTCGGGCAACGCCGGATGAGGTTGCAGTACGGCTTTGTAGTAGGGCA
AAGACAGCAGGGCCAGCAATTTGCACAGGCTTTCGCGGACTGCTAATCCA
GTATGGGTGGGATCTGGCAGCAAGGCTCTGTCAAGATGCCCGTGGTCAAG
GACCGGCCGAGTGTTTTCATCGAACGTCACTGGTCACAAAACTGTCGACT
GATGATCGTATAGAGCTCTGCATTGACGCCACCAATGATGCCCCGGCAAG
GTGCATTGGTGATATACGAGACCAACATCTAAGCTCCAATGAAAGGGTAG
CATTGTGTCGCGGTTCATCCAGCACCGCTCCCGCACAATGTGTCGCCCAC
GTACCACCTACTGTGGGAACCGGCCATCGTGTGGCGCTGTGCCAAGGTGC
TTCCGAGCAACACTCTTTAGCCCCCGCGCTTTGTCTCAAGAAGATATTGC
AATACGTTCCGTCGTCATTCGGTGCTCCCCTGTGCCAAGGGGTCAGCGAC
TCCAGCGCAGCAGAATGCGCCAACGTAGCCCGCCACGTCATTAAGGATCA
CTTTGTCCTACTGGCGCTATGCAGAGGGGCATCATCTACTCTCCCTGCTG
AATGCGCCAAAGCGGCTATTCGGGTGGGAGCAGAACAGCACCTGGTCGCC
GATCTATGTGCACATACAACTTCGACCGCTCCCGCATCATGTTTTTCTGC
TGCACCCAATCAAATATCGGCAGACTTGCGCACGAAAACATGTGCAAACG
CGTTGTCGGTGGCGCCGGCTCTATGTCTTGCAGCAGCTATGCCGCGCGGC
ATTCGCGTCGAGTCTAATGAAGGTGGCCTCTGCCCGTTGGACCCTGAGGC
TGGAGATCCACCGCGAAGTGGTCTCGAGCACAATTTAGCTTCTCGGTTGT
GCAAACATGCAACTGGTGATGCCCCCGCGGAATGTGGACGAGTGGCCCCA
CGCCAAATGAGCGAGGAAGATATCGAGATGCTGTGTAGTGCTGCCGGAAC
GCCAAGCATGCCAGGAACAATTCAGTGTGCTACCTCAGCTATACTGACGG
GGCTCTCTGGCTCTGACGCTGCCTCGGTCTGTCGTGGAGCTGGCTCTGAT
GCACCCGCTCTATGCGCAGCTGTGGTAGCACATCGAATATGGTCAAGCGC
GCTGGTCGATACATGTGTCGGTGCAACAAACGACGCTCCTGCTCGATGTG
TAAACTCGCTCCCAGTGATGAGGACTCCAACACCTGACGAAATAGCAGTG
TGTCGAGCAACTCGCCCCCGGCCATCTGATCTACAGATCATAAATCTTGC
GCATAACGGCGAGATATTGTTTCCTAATCAACTGATGCAAGCTACTCTTG
AAGTCAGGGATCAGTGGGGAGGAAATATGGCCTTCGAAAGTTCGAGCACT
GTACGCGCCTCCATCGCACTCCGGGGCTCCAATGGCGCGTCAGTGAATGC
CCACGGACGTTTCAACACCACCAAAGACGGCGTGGTCCACTTCTCGCACT
TATCCTTCAGCGGTGCCGGCAATCTCACTTTACAGTTCTTCATTGACGGA
TATGACAGCATGTCCGCTCCTTTGGCGTCCGCGCGAGTAATTGTGGCAGA
AACAGAACACACCGCTTTTCTTCGGCGATGCGGGCGTCTATTTTCGTCCC
TGGCATGCCCGCTATCGGCTGCGAGATATGGTGAGGAGTGTGCCGCACCC
GAAGAGCATGTATCCTCGGCCGTGACTGAAGCAGTTGCCATCGTTTTTTC
CGGAGCGGTTACGGCATGGGACGTGCTAAACTGCCAAACTATTTTGGCGG
AGAATGGCGTGCAGACGACGATGGTATCTGGAAGGTCATATTCGCTCACC
GCTTGGATTTGGTATCACCCTGGTATGGAGGAGTTGGAAACGGGCATAGG
ATTACCGACGCGAGAGCAGTCCGCGTGGGAAACGCTTGGGGTGGAAAGGA
ATGCCAGCGGGCGCGAGATGCGGCGGGCCTATTATCGCCTGTCGCTGCTG
TGGCACCCTGATCGCTGGGTACGCCACTCTATGCATTCGGCCCGCGCTCA
AGATGTTTTTGAGATTGTGAGCGAGGCTTACTCGTGGATGGTGCATTGGT
GATATACGAGACCAACATCTAAGCTCCAATGAAAGGGTAGCATTGTGTCG
CGGTTCATCCAGCACCGCTCCCGCACAATGTGTCGCCCACGTACCACCTA
CTGTGGGAACCGGCCATCGTGTGGCGCTGTGCCAAGGTGCTTCCGAGCAA
CACTCTTTAGCCCCCGCGCTTTGTCTCAAGAAGATATTGCAATACGTTCC
GTCGTCATTCGGTGCTCCCCTGTGCCAAGGGGTCAGCGACTCCAGCGCAG
CAGAATGCGCCAACGTAGCCCGCCACGTCATTAAGGATCACTTTGTCCTA
CTGGCGCTATGCAGAGGGGCATCATCTACTCTCCCTGCTGAATGCGCCAA
AGCGGCTATTCGGGTGGGAGCAGAACAGCACCTGGTCGCCGATCTATGTG
CACATACAACTTCGACCGCTCCCGCATCATGTTTTTCTGCTGCACCCAAT
CAAATATCGGCAGACTTGCGCACGAAAACATGTGCAAACGCGTTGTCGGT
GGCGCCGGCTCTATGTCTTGCAGCAGCTATGCCGCGCGGCATTCGCGTCG
AGTCTAATGAAGGTGGCCTCTGCCCGTTGGACCCTGAGGCTGGAGATCCA
CCGCGAAGTGGTCTCGAGCACAATTTAGCTTCTCGGTTGTGCAAACATGC
AACTGGTGATGCCCCCGCGGAATGTGGACGAGTGGCCCCACGCCAAATGA
GCGAGGAAGATATCGAGATGCTGTGTAGTGCTGCCGGAACGCCAAGCATG
CCAGGAACAATTCAGTGTGCTACCTCAGCTATACTGACGGGGCTCTCTGG
CTCTGACGCTGCCTCGGTCTGTCGTGGAGCTGGCTCTGATGCACCCGCTC
TATGCGCAGCTGTGGTAGCACATCGAATATGGTCAAGCGCGCTGGTCGAT
ACATGTGTCGGTGCAACAAACGACGCTCCTGCTCGATGTGTAAACTCGCT
CCCAGTGATGAGGACTCCAACACCTGACGAAATAGCAGTGTGTCGAGCAA
CTCGCCCCCGGCCATCTGATCTACAGATCATAAATCTTGCGCATAACGGC
GAGATATTGTTTCCTAATCAACTGATGCAAGCTACTCTTGAAGTCAGGGA
TCAGTGGGGAGGAAATATGGCCTTCGAAAGTTCGAGCACTGTACGCGCCT
CCATCGCACTCCGGGGCTCCAATGGCGCGTCAGTGAATGCCCACGGACGT
TTCAACACCACCAAAGACGGCGTGGTCCACTTCTCGCACTTATCCTTCAG
CGGTGCCGGCAATCTCACTTTACAGTTCTTCATTGACGGATATGACAGCA
TGTCCGCTCCTTTGGCGTCCGCGCGAGTAATTGTGGCAGAAACAGAACAC
ACCGCTTTTCTTCGGCGATGCGGGCGTCTATTTTCGTCCCTGGCATGCCC
GCTATCGGCTGCGAGATATGGTGAGGAGTGTGCCGCACCCGAAGAGCATG
TATCCTCGGCCGTGACTGAAGCAGTTGCCATCGTTTTTTCCGGAGCGGTT
ACGGCATGGGACGTGCTAAACTGCCAAACTATTTTGGCGGAGAATGGCGT
GCAGACGACGATGGTATCTGGAAGGTCATATTCGCTCACCGCTTGGATTT
GGTATCACCCTGGTATGGAGGAGTTGGAAACGGGCATAGGATTACCGACG
CGAGAGCAGTCCGCGTGGGAAACGCTTGGGGTGGAAAGGAATGCCAGCGG
GCGCGAGATGCGGCGGGCCTATTATCGCCTGTCGCTGCTGTGGCACCCTG
ATCGCTGGGTACGCCACTCTATGCATTCGGCCCGCGCTCAAGATGTTTTT
GAGATTGTGAGCGAGGCTTACTCGTGGATG