mRNA_H-paniculata_contig4750.11799.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4750.11799.1
Unique NamemRNA_H-paniculata_contig4750.11799.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4750.11799.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 1.390e-16
Identity = 47/93 (50.54%), Postives = 58/93 (62.37%), Query Frame = 2 
Query:  149 WYTEISLPPLNEKMPWLKEEEMVVQ*DGANPHTGKGTRARKLYLAGREDGWNMKFVMQWAGGQSPALTINALGFFTSLKSRVWREHYRMLDAL 427
            WY ++ LP + EKMPWL+ + +VVQ DGA+PHTGKG     L  AG   GW ++ V Q A  QSP L IN LG F SLK RVW  +   +D L
Sbjct:  274 WYIDVLLPAIKEKMPWLRSKRVVVQQDGASPHTGKGN-PEILNSAGIARGWLVELVTQPA--QSPDLNINDLGCFASLKPRVWGVNAFSIDEL 363
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4750.11799.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JIM0_9PHAE1.390e-1650.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4750contigH-paniculata_contig4750:8363..10852 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size726
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4750.11799.1prot_H-paniculata_contig4750.11799.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4750 10431..10739 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930411.5646129-UTR-H-paniculata_contig4750:8362..84261622930411.5646129-UTR-H-paniculata_contig4750:8362..8426Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4750 8363..8426 +
1691481279.9500308-UTR-H-paniculata_contig4750:8362..84261691481279.9500308-UTR-H-paniculata_contig4750:8362..8426Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4750 8363..8426 +
1622930411.5808454-UTR-H-paniculata_contig4750:10190..104301622930411.5808454-UTR-H-paniculata_contig4750:10190..10430Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4750 10191..10430 +
1691481279.9592483-UTR-H-paniculata_contig4750:10190..104301691481279.9592483-UTR-H-paniculata_contig4750:10190..10430Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4750 10191..10430 +
1622930411.614839-UTR-H-paniculata_contig4750:10739..108521622930411.614839-UTR-H-paniculata_contig4750:10739..10852Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4750 10740..10852 +
1691481279.9774506-UTR-H-paniculata_contig4750:10739..108521691481279.9774506-UTR-H-paniculata_contig4750:10739..10852Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4750 10740..10852 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930411.5991504-CDS-H-paniculata_contig4750:10430..107391622930411.5991504-CDS-H-paniculata_contig4750:10430..10739Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4750 10431..10739 +
1691481279.9694157-CDS-H-paniculata_contig4750:10430..107391691481279.9694157-CDS-H-paniculata_contig4750:10430..10739Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4750 10431..10739 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4750.11799.1

>prot_H-paniculata_contig4750.11799.1 ID=prot_H-paniculata_contig4750.11799.1|Name=mRNA_H-paniculata_contig4750.11799.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
MKFVMQWAGGQSPALTINALGFFTSLKSRVWREHYRMLDALAEGIERTCG
RYDADTLEMDWQSLVKRCSQLLNALGGNDLDIGHTESRKRQREGLLDHLD
PD*
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mRNA from alignment at H-paniculata_contig4750:8363..10852+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4750.11799.1 ID=mRNA_H-paniculata_contig4750.11799.1|Name=mRNA_H-paniculata_contig4750.11799.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2490bp|location=Sequence derived from alignment at H-paniculata_contig4750:8363..10852+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGGAACAGGGTATGGCACACTTCGAAGACTGCAAGTTCTTCTTGCGAGG
GACATGTGTCAATGGTAAGAAGCGTGTTTTTTTCCAAATCCGTGCTGCTT
TCTATTGTCCCCGTAAAATCCTCTGATCGATTTGAGTGATGATTTGACCA
GCAGCAGCAACAGCAGCAGTGAGTTTGGCTCGTCTTCCACAACTACACAC
AGCGTCGTGTATATGCATGAATAGAAAGCTCCCACACCCCAATCACTACC
AGCTCTACTCTGTTCTACGGATGGCTACAGTACCATGTGCAGTAGGAGGA
GTTCCAGCTTAAAATTAATAACATACTGATGTCTGGAAGAACTCCTTCTA
TAACACGCCGGGTGATCAAACCCACCTTCCGTACCCAAAGCCCTAATTTT
CAATGTTGCAAACAGTAAGCCAAATCCAAAACCATGTTGATCGACTCTAG
TCCAGTGGAATCATGCGACACTTTGTCCAGCTGACCGACTGATGACCTGT
ATAGTGCGACCTATATAGCACGCCTATGATATTGGATGCATCACGTCTTT
GATATGACACCACGAAGGCGGGATTATGGGTCAGCATTATGTAGTGTCGT
TCGTGTGTGTGGGGTATGAGGGGGTGCAGCAGCAACTTTTCGCCGATGAC
GCTATCACGCTGTTCCTCAAAAGAAAACTCGTTAATCGTCGAAAAGAACC
TATTTTATTTACAGTATTAGCCATGGGTACTTCGTGAACCTGACCCACCC
CTGGTCCTGAAGAGGTACATGACATGACAGGCGGCTAGCTGGGCTGAGCG
CGATGTACGTCGCCTTGCCGCAGCTAAATAATTTAATTTCTCCACGCTGG
TTAAACTCGCCGAGGGATTGGATTTCTGATGAACATTAGCCATTTCACGA
ACAGTCAGGACCTGACAGCTATTCTTAATAGTCAGTGAAAGCTGACCACG
TTCAGAAGCGGTCTGCACACTAAATACTGCATTGGAAATTATGTGCACTG
TGTACTAGGATAACCGAATAAGAGAGGAGAGGAACCGTCTGGATCAGTTC
GCCGGGGTGATGTATTGGGGACGGTAATACAAGGGCCCCGGCCTCTCGGT
GTTGACTTTTCTATCGAGATTATGCTAATTAGAGCACCTGAAGAAGCAAC
GTGCTTCGGAGCACGTTCCTGAGGTTCCTAGGATTCCTAAGAAAATCCGA
CCCACATCCATTATGATTTTCCAGTGTTTCGTATCCTTCATATATTGAAT
CTTCATAACGTTCTACTAAAAAATACCACCTTTGTCCCACAAGTCTGGCT
AATAACGATATTTGTAAATAGTTTTTGCGATTTGAGGTTTCGTGAAAAAT
ACAGCATATCATTCGAAAGCCCACATGTTCAGTTTGCCAGTAGATATCTT
CATAATGTTTTTTAATTTGAAGTGGTTGAGAGCCGGGTATCTCAACACTT
TTCTTTTTTTTTCGGAAATGGCGGATTTTGGAAAAAAACAGCCGATGAGC
CGAAATCTGCTGAAAATGATGTTTTTCCATTGTTTCGCGAGCTGTGTCTT
CGTGTGTTGCTAGATTTTCCAGACCAGCAATAACGTAAATGGAGCCCCTC
AATCATATGACCCCAGCGGATTTGTTTTTAGAATATATATTTTTCCGATT
TGGTTATAAAAAATAGAATTCTGAAAGATTTTACGGGAAGGAGCGGATGG
GCTCCATCAAGGTGTAGCACAAGAGTCACATTTCTGAAGTGATTTTCATC
TGCGCTGTTTCCCGCCCGGATCGTGACAACGGCCCTCCGACGGCGCGATC
GAGACTTGGCGTATTAACGTCATCAAAGAGGCGCAGCAGAGCATCGCTCG
TCGCGAAAAGCGTTACGAGCACGAGGTTGAGATCACCATCGACAGCGAGT
GATACTAGGAGGTGGTACACGGAGATTTCCCTCCCCCCACTCAATGAAAA
GATGCCATGGTTGAAGGAGGAGGAAATGGTCGTGCAGTAGGATGGCGCGA
ACCCGCACACGGGCAAGGGCACACGGGCAAGGAAGCTCTATCTGGCAGGG
AGAGAGGATGGATGGAACATGAAGTTCGTAATGCAGTGGGCGGGGGGGCA
GTCTCCTGCTCTCACTATCAACGCTTTGGGGTTCTTCACATCCCTAAAAT
CCAGAGTGTGGAGGGAGCACTACCGTATGTTGGACGCCCTTGCAGAGGGG
ATTGAAAGAACGTGCGGCCGGTATGATGCGGATACTCTAGAGATGGATTG
GCAGAGCCTCGTCAAGCGGTGCAGCCAGCTATTGAACGCACTGGGGGGAA
ACGATTTGGACATCGGTCATACCGAGAGCAGGAAAAGGCAGCGTGAGGGG
CTTTTGGACCACTTGGATCCCGATTGACAGAGCCGCTTACGACGTGGCTT
TCAATCGGTGGATTGACGGAGAGGATGGCAGTAATGAACAATGAATTTAT
TGTACTACGTAGTATGAAACGCCCAGGGATATGACGTAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig4750:8363..10852+

>mRNA_H-paniculata_contig4750.11799.1 ID=mRNA_H-paniculata_contig4750.11799.1|Name=mRNA_H-paniculata_contig4750.11799.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig4750:8363..10852+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGTTCGTAATGCAGTGGGCGGGGGGGCAGTCTCCTGCTCTCACTAT
CAACGCTTTGGGGTTCTTCACATCCCTAAAATCCAGAGTGTGGAGGGAGC
ACTACCGTATGTTGGACGCCCTTGCAGAGGGGATTGAAAGAACGTGCGGC
CGGTATGATGCGGATACTCTAGAGATGGATTGGCAGAGCCTCGTCAAGCG
GTGCAGCCAGCTATTGAACGCACTGGGGGGAAACGATTTGGACATCGGTC
ATACCGAGAGCAGGAAAAGGCAGCGTGAGGGGCTTTTGGACCACTTGGAT
CCCGATTGAATGAAGTTCGTAATGCAGTGGGCGGGGGGGCAGTCTCCTGC
TCTCACTATCAACGCTTTGGGGTTCTTCACATCCCTAAAATCCAGAGTGT
GGAGGGAGCACTACCGTATGTTGGACGCCCTTGCAGAGGGGATTGAAAGA
ACGTGCGGCCGGTATGATGCGGATACTCTAGAGATGGATTGGCAGAGCCT
CGTCAAGCGGTGCAGCCAGCTATTGAACGCACTGGGGGGAAACGATTTGG
ACATCGGTCATACCGAGAGCAGGAAAAGGCAGCGTGAGGGGCTTTTGGAC
CACTTGGATCCCGATTGA
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