prot_H-paniculata_contig4744.11786.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4744.11786.1 vs. uniprot
Match: A0A6H5KJZ4_9PHAE (General transcription factor IIH subunit 4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJZ4_9PHAE) HSP 1 Score: 239 bits (610), Expect = 2.310e-75 Identity = 120/161 (74.53%), Postives = 135/161 (83.85%), Query Frame = 0
Query: 1 ILSSGT--NANVFEILERLPADALDKLYGKGVVTAKGMTS-NHGQWTCRAILQSLPQLAKQHVMRLLFVEEYVEKGMLKSWVKKEYHRVHSTSIRRLVSLRVLLQKNDGQEYLLNPPFRESLQRALCASDKTPWQGDVPLVPDRSPPSIAKIEQKMHSQWQ 158
+L+S T + NVF+ LERLP DALDKLYG A+G +HGQWTCRA+LQSLPQLAKQHVMRLLFVE V KGMLKSWVKKEY RVH+ S+R+LVSLRVLL DGQEY LNPPFRE+LQRALCASDKTPWQGDVPL DRSPP++AKIE++MHSQWQ
Sbjct: 12 LLASTTTMSLNVFDYLERLPPDALDKLYGAAPPAAQGQGGRSHGQWTCRALLQSLPQLAKQHVMRLLFVEGPVGKGMLKSWVKKEYQRVHAASVRKLVSLRVLLPSADGQEYQLNPPFRENLQRALCASDKTPWQGDVPLSADRSPPTVAKIERQMHSQWQ 172
BLAST of mRNA_H-paniculata_contig4744.11786.1 vs. uniprot
Match: D7FHY7_ECTSI (General transcription factor IIH subunit 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHY7_ECTSI) HSP 1 Score: 236 bits (603), Expect = 6.460e-73 Identity = 119/161 (73.91%), Postives = 133/161 (82.61%), Query Frame = 0
Query: 1 ILSSGT--NANVFEILERLPADALDKLYGKGVVTAKGMTS-NHGQWTCRAILQSLPQLAKQHVMRLLFVEEYVEKGMLKSWVKKEYHRVHSTSIRRLVSLRVLLQKNDGQEYLLNPPFRESLQRALCASDKTPWQGDVPLVPDRSPPSIAKIEQKMHSQWQ 158
+L+S T + NVF+ LERLP DALDKLYG A G +HGQWTCRA+LQSLPQLAKQHVMRLLFVE V KGMLKSWVKKEY RVH+ S+R+LVSLRVLL GQEY LNPPFRE+LQRALCASDKTPWQGDVPL DRSPP++AKIE++MHSQWQ
Sbjct: 12 LLASATTMSLNVFDYLERLPPDALDKLYGAAPPAADGQGGRSHGQWTCRALLQSLPQLAKQHVMRLLFVEGPVGKGMLKSWVKKEYQRVHAASVRKLVSLRVLLPSAGGQEYQLNPPFRENLQRALCASDKTPWQGDVPLSADRSPPTVAKIERQMHSQWQ 172
BLAST of mRNA_H-paniculata_contig4744.11786.1 vs. uniprot
Match: A0A1V9ZYD0_9STRA (General transcription factor IIH subunit 4 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZYD0_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 8.130e-16 Identity = 50/149 (33.56%), Postives = 71/149 (47.65%), Query Frame = 0
Query: 9 NVFEILERLPADALDKLYGKGVVTAKGMTSNHGQWTCRAILQSLPQLAKQHVMRLLFVEEYVEKGMLKSWVKKEYHRVHSTSIRRLVSLRVLLQKNDGQEYLLNPPFRESLQRALCASDKTPWQGDVPLVPDRSPPSIAKIEQKMHSQW 157
N FE L LP ++D+L+ + W C+A+ QSLP LA+Q VMRLLF L WVK + SI +L LRVL + +GQ LNP F+ L+ AL + +PW+ + P S ++E +W
Sbjct: 2 NAFEYLTTLPVASVDRLF-------------NDPWACQAVFQSLPSLAQQVVMRLLFSHSPTPLSSLNEWVKPSAIETINLSIEKLCHLRVLSKSGNGQ-IQLNPNFKAQLKAALSSLGGSPWEEGRKKIKQEKPISAVQLEHYARKRW 136
BLAST of mRNA_H-paniculata_contig4744.11786.1 vs. uniprot
Match: I0YPN8_COCSC (RNA polymerase II transcription factor B subunit 2 n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YPN8_COCSC) HSP 1 Score: 82.8 bits (203), Expect = 1.460e-15 Identity = 54/150 (36.00%), Postives = 81/150 (54.00%), Query Frame = 0
Query: 14 LERLPADALDKLYGKGVVTAKGMTSNHGQWTCRAILQSLPQLAKQHVMRLLFVEEYVEKGMLKSWVKKEYHRVHSTSIRRLVSLRVLLQKN---DGQE--YLLNPPFRESLQRALCASDKTPWQGDVPLVPDRSPPSIAKIEQKMHSQWQ 158
LE LPAD + KLY S+H W C+A+L+ L LAKQ+V+R+LF++ V K ++ SW+ + H+T+I RL L++LL N +GQ+ Y L+P FRE L+ A+ K +VP + PS + QW+
Sbjct: 7 LETLPADTVGKLY-----------SSH--WACQAVLRGLTSLAKQYVIRMLFLDVPVTKSVMDSWIAQSSKSKHATAINRLKGLQLLLPSNVASNGQQAAYQLHPVFREQLRWAVSTGGKVGID-EVPAGVLQQAPSREMLSSYAQQQWE 142
BLAST of mRNA_H-paniculata_contig4744.11786.1 vs. uniprot
Match: A0A2R6WYY1_MARPO (RNA polymerase II transcription factor B subunit 2 n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WYY1_MARPO) HSP 1 Score: 82.8 bits (203), Expect = 1.500e-15 Identity = 51/153 (33.33%), Postives = 77/153 (50.33%), Query Frame = 0
Query: 9 NVFEILERLPADALDKLYGKGVVTAKGMTSNHGQWTCRAILQSLPQLAKQHVMRLLFVEEYVEKGMLKSWVKKEYHRVHSTSIRRLVSLRVLLQKNDGQE---YLLNPPFRESLQRALCASDKTPWQGDVPLVPDRSPPSIAKIEQKMHSQWQ 158
N E++ LPA LD+LYG WTC+A+++SLP LAKQ+V+RLLFVE V ++ W + H +I +L LRVL++ + ++ Y LNP ++ LQ L P + +P PS+ +E QW+
Sbjct: 10 NFMEMVAALPAAKLDELYGS-------------PWTCQAVVRSLPPLAKQYVLRLLFVEAAVSSKSIQDWALPDALNKHKVAIDKLEQLRVLIEATERRKEVSYKLNPRLQKQLQDVLKTGGGVPRES-LPASFAARVPSLVDLENYAMKQWE 148
BLAST of mRNA_H-paniculata_contig4744.11786.1 vs. uniprot
Match: A0A061S035_9CHLO (RNA polymerase II transcription factor B subunit 2 (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S035_9CHLO) HSP 1 Score: 80.5 bits (197), Expect = 9.630e-15 Identity = 47/153 (30.72%), Postives = 77/153 (50.33%), Query Frame = 0
Query: 9 NVFEILERLPADALDKLYGKGVVTAKGMTSNHGQWTCRAILQSLPQLAKQHVMRLLFVEEYVEKGMLKSWVKKEYHRVHSTSIRRLVSLRVLLQKND---GQEYLLNPPFRESLQRALCASDKTPWQGDVPLVPDRSPPSIAKIEQKMHSQWQ 158
N+ LE LP L +Y WTC+A+L++LP +AKQ+V+R+LF+ V + + +W + H+ ++ + L++L + D G Y L P F+ +LQRALC G VP ++ PS A +E+ +QW+
Sbjct: 6 NLLNYLEELPPIKLRNIY-------------ESHWTCQAVLRALPPIAKQYVLRILFIAGSVPENTVSNWSQSAASDKHAAALDAMQRLQILQPQPDRAGGCSYALQPAFQANLQRALCLRHPG-GSGGVPAAVKQAAPSPADVEKYSSNQWE 144
BLAST of mRNA_H-paniculata_contig4744.11786.1 vs. uniprot
Match: A0A1Y1I418_KLENI (RNA polymerase II transcription factor B subunit 2 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I418_KLENI) HSP 1 Score: 79.7 bits (195), Expect = 1.800e-14 Identity = 53/151 (35.10%), Postives = 76/151 (50.33%), Query Frame = 0
Query: 14 LERLPADALDKLYGKGVVTAKGMTSNHGQWTCRAILQSLPQLAKQHVMRLLFVEEYVEKGMLKSWVKKEYHRVHSTSIRRLVSLRVLLQ------KNDGQEYLLNPPFRESLQRALCASDKTPWQGDVPLVPDRSPPSIAKIEQKMHSQWQ 158
L LP LD+LY +TC+A+L+SLP +AKQ+V+RLLF+E+ + ++ W K E H+ ++ RL LRVLL+ K D Y LNP F++ LQRAL + P P + P S A + QW+
Sbjct: 7 LSELPPVKLDRLY-------------ESHFTCQAVLRSLPPIAKQYVLRLLFIEQPIAGETMRGWAKPEALGKHNAAMERLDQLRVLLETGGKSGKKDAS-YRLNPVFQQQLQRALSGAIGPPKDPLPPALASHKP-SPADLNAYALKQWE 142
BLAST of mRNA_H-paniculata_contig4744.11786.1 vs. uniprot
Match: A0A3B4UAE7_SERDU (General transcription factor IIH subunit 4 n=7 Tax=Clupeocephala TaxID=186625 RepID=A0A3B4UAE7_SERDU) HSP 1 Score: 77.4 bits (189), Expect = 1.190e-13 Identity = 50/153 (32.68%), Postives = 78/153 (50.98%), Query Frame = 0
Query: 9 NVFEILERLPADALDKLYGKGVVTAKGMTSNHGQWTCRAILQSLPQLAKQHVMRLLFVEEYVEKGMLKSWVKKEYHRVHSTSIRRLVSLRVL-LQKNDG--QEYLLNPPFRESLQRALCASDKTPWQGDVPLVPDRSPPSIAKIEQKMHSQWQ 158
N+ E L L D LD+LY NH TC A+ + LP LAK +VMR+LF+++ + + + WVKK+ H+ H + L LR+ Q+ G Q Y+LNP F+++L+ AL + L PDR I +++ +W+
Sbjct: 11 NLHEYLRELSPDILDRLY------------NHPA-TCLAVYRELPSLAKNYVMRMLFLDQPLPQAAVALWVKKDSHKDHDECVSVLAGLRLWHSQQLQGGLQGYILNPVFKDNLRIALLGGGRAWADEGSTLGPDRHARDIESLDRYAMERWE 150
BLAST of mRNA_H-paniculata_contig4744.11786.1 vs. uniprot
Match: A0A3B4UAI4_SERDU (General transcription factor IIH subunit 4 n=2 Tax=Seriola dumerili TaxID=41447 RepID=A0A3B4UAI4_SERDU) HSP 1 Score: 77.4 bits (189), Expect = 1.270e-13 Identity = 50/153 (32.68%), Postives = 78/153 (50.98%), Query Frame = 0
Query: 9 NVFEILERLPADALDKLYGKGVVTAKGMTSNHGQWTCRAILQSLPQLAKQHVMRLLFVEEYVEKGMLKSWVKKEYHRVHSTSIRRLVSLRVL-LQKNDG--QEYLLNPPFRESLQRALCASDKTPWQGDVPLVPDRSPPSIAKIEQKMHSQWQ 158
N+ E L L D LD+LY NH TC A+ + LP LAK +VMR+LF+++ + + + WVKK+ H+ H + L LR+ Q+ G Q Y+LNP F+++L+ AL + L PDR I +++ +W+
Sbjct: 47 NLHEYLRELSPDILDRLY------------NHPA-TCLAVYRELPSLAKNYVMRMLFLDQPLPQAAVALWVKKDSHKDHDECVSVLAGLRLWHSQQLQGGLQGYILNPVFKDNLRIALLGGGRAWADEGSTLGPDRHARDIESLDRYAMERWE 186
BLAST of mRNA_H-paniculata_contig4744.11786.1 vs. uniprot
Match: UPI00202671EA (general transcription factor IIH subunit 4-like n=1 Tax=Sphaerodactylus townsendi TaxID=933632 RepID=UPI00202671EA) HSP 1 Score: 75.5 bits (184), Expect = 1.440e-13 Identity = 52/154 (33.77%), Postives = 76/154 (49.35%), Query Frame = 0
Query: 9 NVFEILERLPADALDKLYGKGVVTAKGMTSNHGQWTCRAILQSLPQLAKQHVMRLLFVEEYVEKGMLKSWVKKEYHRVHSTSIRRLVSLRVL---LQKNDGQEYLLNPPFRESLQRALCASDKTPWQGDVP-LVPDRSPPSIAKIEQKMHSQWQ 158
N+ E L L LD+LY NH TC A+ + LP LAK +VMR+LF+E+ + K + SWVKK+Y + S L+ LR+ L Q +LNP F+E+L AL K W D L PD+ + +++ +W+
Sbjct: 16 NLHEFLRGLSPGILDRLY------------NHPA-TCLAVFRELPGLAKNYVMRMLFLEQALPKAAVASWVKKDYVKEQDESSDVLLGLRLWHTQLLPGGLQGIILNPIFKENLHIALLGGGKA-WSDDTSQLGPDKHARDVPSLDKYAEERWE 155 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4744.11786.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >prot_H-paniculata_contig4744.11786.1 ID=prot_H-paniculata_contig4744.11786.1|Name=mRNA_H-paniculata_contig4744.11786.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=158bpback to top Annotated Terms
The following terms have been associated with this polypeptide:
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