mRNA_H-paniculata_contig4742.11783.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4742.11783.1
Unique NamemRNA_H-paniculata_contig4742.11783.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4742.11783.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4742contigH-paniculata_contig4742:9212..14825 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size3296
Cds size714
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4742.11783.1prot_H-paniculata_contig4742.11783.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4742 9431..12462 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930409.4664018-UTR-H-paniculata_contig4742:9211..94301622930409.4664018-UTR-H-paniculata_contig4742:9211..9430Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4742 9212..9430 +
1691481278.8580158-UTR-H-paniculata_contig4742:9211..94301691481278.8580158-UTR-H-paniculata_contig4742:9211..9430Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4742 9212..9430 +
1622930409.5521877-UTR-H-paniculata_contig4742:12462..148251622930409.5521877-UTR-H-paniculata_contig4742:12462..14825Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4742 12463..14825 +
1691481278.9140856-UTR-H-paniculata_contig4742:12462..148251691481278.9140856-UTR-H-paniculata_contig4742:12462..14825Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4742 12463..14825 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930409.4788575-CDS-H-paniculata_contig4742:9430..95021622930409.4788575-CDS-H-paniculata_contig4742:9430..9502Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4742 9431..9502 +
1691481278.8689167-CDS-H-paniculata_contig4742:9430..95021691481278.8689167-CDS-H-paniculata_contig4742:9430..9502Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4742 9431..9502 +
1622930409.4920297-CDS-H-paniculata_contig4742:10689..108241622930409.4920297-CDS-H-paniculata_contig4742:10689..10824Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4742 10690..10824 +
1691481278.8797622-CDS-H-paniculata_contig4742:10689..108241691481278.8797622-CDS-H-paniculata_contig4742:10689..10824Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4742 10690..10824 +
1622930409.5131195-CDS-H-paniculata_contig4742:11363..115281622930409.5131195-CDS-H-paniculata_contig4742:11363..11528Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4742 11364..11528 +
1691481278.8909352-CDS-H-paniculata_contig4742:11363..115281691481278.8909352-CDS-H-paniculata_contig4742:11363..11528Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4742 11364..11528 +
1622930409.5368817-CDS-H-paniculata_contig4742:12120..124621622930409.5368817-CDS-H-paniculata_contig4742:12120..12462Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4742 12121..12462 +
1691481278.9023714-CDS-H-paniculata_contig4742:12120..124621691481278.9023714-CDS-H-paniculata_contig4742:12120..12462Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4742 12121..12462 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4742.11783.1

>prot_H-paniculata_contig4742.11783.1 ID=prot_H-paniculata_contig4742.11783.1|Name=mRNA_H-paniculata_contig4742.11783.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=238bp
MTRGESQGERPSQLEEFAHQSSLSAARPSFRCTHNAENFSQANVARPPSV
ASVGIVAELLLPLSAPQQQGLCVGASSNGLLDDTAPMEEFTAAEAEASLL
SNKPSDVDYSDLASFLTESFNTSQDGAGAGSEYVSLENDPYSDYLHFGCG
GTLSLVQQYPLAQDAQANAAQEVTQPLVPPAQSTRTPTQDRGLGCNGTSQ
GAVGNDLVGDSLVDRMFGIPNNVCDPYYDVPTKPLLH*
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mRNA from alignment at H-paniculata_contig4742:9212..14825+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4742.11783.1 ID=mRNA_H-paniculata_contig4742.11783.1|Name=mRNA_H-paniculata_contig4742.11783.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5614bp|location=Sequence derived from alignment at H-paniculata_contig4742:9212..14825+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACCAAGATTCCATTGCCAGGCTGCTGTCTTTGAGCAGTGGTGAAAGTGA
GAGTGTTAACTTAGCGGACGTTAGGTCTGGCTGCTGTGGCGGTGCGTTGG
CTGCTGCGGCCTTGAATGGTTCCAATGTCTCCAGCAGCGTTGGCGGCGGG
AGTGTGGGACGGAATTGTGCGCAGTGGCCGATATCGCGACGAAATGACCA
GTCGAATGGGTTACAAGCGATGACAAGAGGGGAAAGTCAAGGGGAACGGC
CAAGCCAGTTAGAGGAGTTCGCGCACCAGTCTTCACTTTCGGTGGGTGGT
GCTGGTCTTGGTATTTTTGTGGCGTTTTTTGCTTCGTTTCATTTCGTTTC
GTTTCGTCTTCGTCAAATATAGAAGTTCATTAGATAGGAAAAATTTGATC
GAAAAGTGGATCAATATTGTAACTTCCACATCTGACCCATGCGGCATTAT
ACACTAATCTTCTCATTGGTGGGTTTGAGTCTTACTAAATGTTTTTTTAA
TCTTTTACGCATCCTGCGAGTCGGAACCTGTCCTTGTTGTACTTGTTATG
TTGTACCGTAGACGTGTAGTTTGTATGTTTATATATACTATATATACTAT
ATATATGGTACGTGGCGTACCTACTTGGTTGCAAGAAGCAGTTAAACCAA
TGCAAAGTTTTCGTTCTTGCGTGCACACTTTTCACTCTTGTAGTAGCTTT
TCTGAGATACTGTTTCAGAAAAAATCAAGCGATCTGACAACCTTTGTCGA
GAGCGCTGCAGTCGTTGTGGGTAGGAACCATACCAACTGAATAACTATTC
AGTATGCACTCTGTGTAATGGACCATCTGTCTGTTTTGTGGGAACAGCGG
CGGCCTGACACCTTCTTCCTGCCATGATGGCTTATTACATATATGTTTAT
TATGCTTGTTACATACATGGCAGAAAAGTTGATTTTCTCCGTTGTTGAAG
TGAACGAGGATGGTTAGATAGCGATTAGATTAGGGCTATGTATCGGTAAA
CAATACGTTATGGGCATATCGGTATGTCGATTTTATCGTCATTGTTCAGC
CGTAAAATCGATATCTCGATGGTTTACCCCCAGATGTTCTAATCGTTATC
GACTGAATGTACACATGATGTGGTCACAATCCAATAACTGAGAATGCGTA
CGTTTGCAGAGATGGGAGCTGAAGTGCATATTTTTTATGAGTCTGGCTAT
GTCTCTGCGAGGCCCCGTCACCAGCAGGCAAGGTCATGGGTTTGCGGCAA
GCCGCTCGCCTACTCGCGCTTTGCACTCGTCGATGTATTGGAGACATGGT
ATCGCCAACAGACCAATATGTTACACGTGGTTGAATGAGTGATACACAGC
CTCAGAGTTGACGGCAACCGATGCTACAGGGGTTAATGTTTTGACGTTTG
CTTGGGTTTTCGTCATTTGAGTTGAGCTGCGCCCCCACCCCTTTCCTTCT
CGTATCTTTGCCTTTGGCCACTTTTTAGGCTGCACGACCATCGTTCAGGT
GCACGCACAACGCTGAAAACTTCTCGCAAGCAAATGTCGCGAGGCCACCA
TCGGTAGCTTCTGTGGGCATTGTTGCCGAGCTTCTACTCCCTCTATCAGC
ACCCCAACAACAGGCAAGATCAGATACTCGAGAGAGATAGTACCTGCAGA
CTCGAGCTTATGGCATCCCCCGGGAGCATGCTGGAAGAGTGAAGCTGCGA
TGTATCTGGCGTTGACCTTTATTGAAATGGCTGTTCTTTGTAAATTTTCG
TTCGTTTTCTGTTTTTCCTTTTTCTCGTTCGTTGTTTTCATCACCTCACA
AAGCGACGCCATGATTGGTGATGAGATTGACATTGTGCTATGTGCACGTA
AGCGCCTTGTCTTTCTATTTCTTGCGCATGTGTTATGACGCCATGTTGTC
CAAGTTTTCCCTAGCACTCCGTATAGCCACAACAACAAGGACAACAAGAC
CATAGAGAGCAAAGACAAATAAAACCCTTCATGAGCCACAGGGGGCATTC
ATTCGAGCACGCTTTGTGTTTGTCATCGCCCTGAAACTTGCTGCTGGTGC
TGGGTTCTAGCTCTACAGTTGCAATGTAATGTACCTCTTGTTAGACGTGT
ACACTTATTTCCCTTGTTTCGTTTGTTGTGACCCATGTACTGGTCTGGAC
AGGGTTTGTGTGTCGGTGCCTCGAGCAATGGCCTCCTCGACGACACTGCA
CCAATGGAGGAGTTCACTGCGGCTGAAGCAGAGGCTTCGTTGCTGTCCAA
CAAACCCAGCGACGTGGATTACTCCGACCTTGCCTCCTTTCTTACCGAGA
GCTTCAACACAAGTCAGGTAGGTGTAGGATCGCTGCGATTGGTCGTGATA
GCTGACGCACATGACGCGTTGCCTGTGGCATCTTTCATTTATGGGCGGTG
TGTGTGTGTATGTGTGTTCGTTTCGTGTATTTAGTAGGTCTCCGGACTCT
GTTTTGACTTTCTCGTTGGATGCCCATTGGCTGAAATGCTCAATGCGTCA
GGTTATTGCTTTTTTCGATGTTGTTGGTACACTTATTTCCTCTGTTACGT
ACGTTAAACCTAGCTATCATTATAGAGGCACTTGATCGTCTACATTTCTT
TCAAAAATATATATAATCCTTCAGGTTGATACCTAAAGTTTTGGGTCAAA
GTATTGATTTTGCTCTACCAAAGCATACTCTACGAGGAAACAACTCGGTC
GAAAAAGGGCAAATGTCGTGTTTTGGCTGATCTTTTCAAAAGTAATCTTT
CCCCACCAGTCTGGGATGTTTCCGCAGTGAGGTGAAACGCTCAGCGCATT
AGGTTGTTGCTTTTTGCGTTGCTTGGAAACTATGCCCTTATCATCAACAT
GCATTTAAATGTACTCACCAACACTCTTCACCACCCGTGCTAAAACTGAA
AAATATCAGGATGGTGCTGGGGCTGGCAGTGAATATGTGTCACTTGAAAA
CGACCCTTACAGCGATTACTTGCACTTCGGCTGCGGAGGAACCCTAAGCC
TTGTACAACAGTACCCACTTGCTCAAGACGCTCAAGCCAATGCCGCCCAA
GAGGTTACTCAGCCACTTGTGCCTCCAGCTCAAAGCACTCGGACTCCTAC
CCAGGATCGAGGATTGGGATGTAATGGTACCTCACAGGGAGCGGTGGGGA
ATGATCTTGTTGGGGACTCTCTTGTTGATCGCATGTTTGGTATCCCCAAC
AACGTGTGTGATCCATACTATGATGTACCCACCAAGCCATTACTTCATTA
AATGGTGTTGTAGCAAACCTGCGATTAGGAGAACCATAATGATCGTATTC
TGTCGAGGGAGGCTCCGTAGCTCTTCGGGCACGTGCATTTGTGTGTACTA
GGGTGCAGACGAGGTCATGGCTATACCCTCCTTTCTTGAGTCACGTGATA
ACCTGAGAACGATGGTCTCGCGTCAATAGAGGGAGAAGTGACCAATAATT
GCTTTTTCGTGTCGAGAGTTGTTCCGCTGGGGAGCTCCGTTTTTCGTCGC
GTTTGCTATTAACACTATCACTATTACTCATGGAACGCTGCCTGTTTCGT
CTCGGTGCGATTTGTGTGTGTTTTTTTTGTTTGTGTCCACGGTATCATAG
GGGCGTTGACAGCACTCGTTGCGGCCTTTTTGTTTTTGTATGCGTATTTT
GGTAACTTGGTTATGGTGGTGACGCGTTTGTGTATCTCTCTTGTATATAT
GTCAGGACTTGTGCGTTTTGATGTGTTTCGTTGCGCGCGTGTTTCGTGTG
GGCCTTCGTTTGGTTCACCGTGTTCACGGTGACGAGTAGAGTAACGTGGC
ACAGCATCCGAAGTCTGGGACACTGTCTTTCGAATTGTTTCGTTCTCTAG
CGATGAATTGAGCCTTCAGTGCTGATCGATTTCGAAATTTATGGACATGA
AGAGAGTAGCGTTATTTTTGCGACTTGACTTTTGGTTGTATTACCAGGGA
GCGGGGGTGGGCGCTAAAAAAAGATTGTTCATCTTGTTGCGCTCTATTTT
TACATGAATTTATGTGTTTGTTTTTATCAAGCCAGTAGTACGGGTGTACT
CTCTGCATGGTAGTAGTAGGACCCTATTCGCTGCTCGAGTTATTACTGTG
TTTTGTGTTCCACTCCGAATAGTGTTTTGTACATACATAGTTATCACATC
TAACCAATTTCCACGGAATGAACGGAGAAAAAACGTGTTTTATCTACGCC
TTGAAATATACGAGCTCATTGCGTGTGCCGCTCTTGCGTCTGCTGCTGGT
GCCGCACTCCAGAGAGGTGGTTTCCGTATTTATTTCGACAATTTTGGTTT
TGTCATATCCATTCATCCATCTCACCAACGCTCTTTTCGATGATCTTTTG
TTTGCTCGTATGGTTGAAGCACGTATATCGCAGGGGCCGTGTGTATGCGT
GCTCCCTTGTTCTTCTGTAGTTATTTGTGGCACGGCGTTTGTATTTTTCA
GGTGTGATGGCGGCGACGATGGTGAGGAAGCGATGACTGTACTCACGACC
GCGGCACGTGTATACTTGTCGTTATACTGGAGGCTATCACTGTCTTGCGC
TATAGGTGGTACATGACTACAGAGCCCCTTTTGTGTCGATCAATGACGGC
CTTGCAAGCTGGAGCGGGGGACGACAGTAACTCGACCCAACCCCGCTCCA
TCTGATCGGTAGATAAGCAGGTGTCGCTAGCTTCATTATCCACCGTGATG
GGACTTGTGTGAAATACGTTTTTATGTGGTTTATAAAAAGACACCGAGCG
TCGTACTATCACTTTTGCTGTAACAGTCTCTCACTACTCCCCCCGCTTTC
CGGGGGTCATCAGACAAACCATGAATAGTACAAATATGTTTGTACCGAAG
CGAATCTTTCGGGTGGTGGCTACTTACTCTTCGCGCCGATGGTCGATAAG
CCATCGATTGCTGAGTCGAAGGCCATCTTCAACTCGATGGTTTTGGTTGT
TGGATCTTTGGGTTGATGACTAGTGGTCATGAAAAAAAGGAGTCTTCGAT
GCTGCGATGTTGGCATAGTAAGGAGTAACTGGGTCGATCGCCCATTATGA
GCAAGCAGGTATGGAGGTTGAGAATGGAGTAGGAGGGACAAAACAACGAA
TGGCAGCAATGAGGCATTGTTCACTTTTGGCTCATCCTCGCGATGAGGGT
GATAGTTTGCCCACCATGTTATGCGTATTTAGCGTATAGAATAGGCGCGT
ATCACGTAGACAGCAACAGCCAACAATACTTGATGGTCTAGGTGTTTCGT
GCTACCGGGTTACAGATTGATGATCGATTCCACGTCCGTCTAGAGGGTGT
CTTGGAGAACTCTAGTCAAGTTGGCTTGGGTGTGCGCTTGGTGTGTCATA
GATGATAATGCCTCCGCTGTTGTGTGTCAGACCCTTATTTCTGGACAAGT
GCGCAGTGTGACAGAGGGGAAATACGTTGTTGGGGTTGCATCTGCAGCTG
AGCTCACTTGATATCGACTGAGGGTCACTGTTACGAGGTATTGTACACTA
TTGAAAGAATTTGCCTTATTAGTAGGAGACCTGTTCTAGACGAGTGAGCC
TGGTTTACGATCCCAATTCCGGTTGTTTTATGGAAATACACCAAACTTTT
TTATGATAACAAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig4742:9212..14825+

>mRNA_H-paniculata_contig4742.11783.1 ID=mRNA_H-paniculata_contig4742.11783.1|Name=mRNA_H-paniculata_contig4742.11783.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1428bp|location=Sequence derived from alignment at H-paniculata_contig4742:9212..14825+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACAAGAGGGGAAAGTCAAGGGGAACGGCCAAGCCAGTTAGAGGAGTT
CGCGCACCAGTCTTCACTTTCGATGACAAGAGGGGAAAGTCAAGGGGAAC
GGCCAAGCCAGTTAGAGGAGTTCGCGCACCAGTCTTCACTTTCGGCTGCA
CGACCATCGTTCAGGTGCACGCACAACGCTGAAAACTTCTCGCAAGCAAA
TGTCGCGAGGCCACCATCGGTAGCTTCTGTGGGCATTGTTGCCGAGCTTC
TACTCCCTCTATCAGCACCCCAACAACAGGCTGCACGACCATCGTTCAGG
TGCACGCACAACGCTGAAAACTTCTCGCAAGCAAATGTCGCGAGGCCACC
ATCGGTAGCTTCTGTGGGCATTGTTGCCGAGCTTCTACTCCCTCTATCAG
CACCCCAACAACAGGGTTTGTGTGTCGGTGCCTCGAGCAATGGCCTCCTC
GACGACACTGCACCAATGGAGGAGTTCACTGCGGCTGAAGCAGAGGCTTC
GTTGCTGTCCAACAAACCCAGCGACGTGGATTACTCCGACCTTGCCTCCT
TTCTTACCGAGAGCTTCAACACAAGTCAGGGTTTGTGTGTCGGTGCCTCG
AGCAATGGCCTCCTCGACGACACTGCACCAATGGAGGAGTTCACTGCGGC
TGAAGCAGAGGCTTCGTTGCTGTCCAACAAACCCAGCGACGTGGATTACT
CCGACCTTGCCTCCTTTCTTACCGAGAGCTTCAACACAAGTCAGGATGGT
GCTGGGGCTGGCAGTGAATATGTGTCACTTGAAAACGACCCTTACAGCGA
TTACTTGCACTTCGGCTGCGGAGGAACCCTAAGCCTTGTACAACAGTACC
CACTTGCTCAAGACGCTCAAGCCAATGCCGCCCAAGAGGTTACTCAGCCA
CTTGTGCCTCCAGCTCAAAGCACTCGGACTCCTACCCAGGATCGAGGATT
GGGATGTAATGGTACCTCACAGGGAGCGGTGGGGAATGATCTTGTTGGGG
ACTCTCTTGTTGATCGCATGTTTGGTATCCCCAACAACGTGTGTGATCCA
TACTATGATGTACCCACCAAGCCATTACTTCATTAAGATGGTGCTGGGGC
TGGCAGTGAATATGTGTCACTTGAAAACGACCCTTACAGCGATTACTTGC
ACTTCGGCTGCGGAGGAACCCTAAGCCTTGTACAACAGTACCCACTTGCT
CAAGACGCTCAAGCCAATGCCGCCCAAGAGGTTACTCAGCCACTTGTGCC
TCCAGCTCAAAGCACTCGGACTCCTACCCAGGATCGAGGATTGGGATGTA
ATGGTACCTCACAGGGAGCGGTGGGGAATGATCTTGTTGGGGACTCTCTT
GTTGATCGCATGTTTGGTATCCCCAACAACGTGTGTGATCCATACTATGA
TGTACCCACCAAGCCATTACTTCATTAA
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