mRNA_H-paniculata_contig4741.11781.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4741.11781.1
Unique NamemRNA_H-paniculata_contig4741.11781.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4741.11781.1 vs. uniprot
Match: D7FL45_ECTSI (Plastoquinol--plastocyanin reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FL45_ECTSI)

HSP 1 Score: 306 bits (784), Expect = 2.130e-98
Identity = 158/227 (69.60%), Postives = 179/227 (78.85%), Query Frame = 1 
Query:   16 LFKILSLAALAMTPSAYGFVAPFAATTAFRGNAVSTRSAV--AASRPMRMSAADDSFVPDMSRRQAMNLILFSSLGVNVLGLAVPYIAFFVPPGSGDSSGGVVAHDAIGNDVTTSSWLATHAAGSRELAEGIKGDATYLTVTDDKKISDYGIVAVCTHLGCVVPWSKAENKFICPCHGSQYDSTGKVVRGPAPLSLALSHVEESDGGKVTFKQWTETDFRNGEKPWW 690
            + K ++LAALA    A  FV+P A  T+F G+AV+ R     A S+ M+MS+ ++ FVPDM RR AMNLIL  S+GVNVLGLAVPYIAFFVP        GV A DAIGN+VT  SWLATH  GSRELAEGIKGDATYL VT+DKK+ DYGIVAVCTHLGCVVPW+KAENKF+CPCHGSQYD TGKV+RGPAPLSLALSHVEE DG KV FK+W ETDFR G+KPWW
Sbjct:    1 MIKAVALAALAALFGADAFVSPVA--TSFSGSAVAQRPTASRATSKAMKMSSNEEVFVPDMDRRTAMNLILAGSIGVNVLGLAVPYIAFFVPXXXXXXXXGVTAKDAIGNEVTVESWLATHGVGSRELAEGIKGDATYLVVTEDKKVQDYGIVAVCTHLGCVVPWNKAENKFMCPCHGSQYDQTGKVIRGPAPLSLALSHVEEVDG-KVIFKEWKETDFRTGDKPWW 224
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BLAST of mRNA_H-paniculata_contig4741.11781.1 vs. uniprot
Match: A0A836CBH8_9STRA (Plastoquinol--plastocyanin reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBH8_9STRA)

HSP 1 Score: 289 bits (740), Expect = 8.040e-92
Identity = 145/222 (65.32%), Postives = 171/222 (77.03%), Query Frame = 1 
Query:   25 ILSLAALAMTPSAYGFVAPFAATTAFRGNAVSTRSAVAASRPMRMSAADDSFVPDMSRRQAMNLILFSSLGVNVLGLAVPYIAFFVPPGSGDSSGGVVAHDAIGNDVTTSSWLATHAAGSRELAEGIKGDATYLTVTDDKKISDYGIVAVCTHLGCVVPWSKAENKFICPCHGSQYDSTGKVVRGPAPLSLALSHVEESDGGKVTFKQWTETDFRNGEKPWW 690
            +L++   A+T  ++GFVAP    +AF G  V ++    AS  ++MSAA+D+FVPDM+RR AMN IL  S GV VLGLA+PYI+FFVP  +G + GGV+A DA+G DVT   W+ATH  GSREL EGIKGDATYLTV  DK I D+GIVAVCTHLGCVVPW +AENKFICPCHGSQY+  GKVVRGPAPLSLALSH+E +D G V FK WTETDFR GE PWW
Sbjct:    5 LLAVCVAAVTCLSHGFVAP----SAFTGARVLSKPVAQASSAIKMSAAEDAFVPDMNRRVAMNAILAGSAGVVVLGLAIPYISFFVPKSAGGAGGGVIARDAVGQDVTVEGWVATHLPGSRELVEGIKGDATYLTVKQDKTIQDFGIVAVCTHLGCVVPWVQAENKFICPCHGSQYNMDGKVVRGPAPLSLALSHIE-TDTGNVVFKPWTETDFRTGEAPWW 221
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BLAST of mRNA_H-paniculata_contig4741.11781.1 vs. uniprot
Match: A0A835YPA4_9STRA (Plastoquinol--plastocyanin reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPA4_9STRA)

HSP 1 Score: 283 bits (724), Expect = 2.010e-89
Identity = 138/203 (67.98%), Postives = 160/203 (78.82%), Query Frame = 1 
Query:   82 FAATTAFRGNAVSTRSAVAASRPMRMSAADDSFVPDMSRRQAMNLILFSSLGVNVLGLAVPYIAFFVPPGSGDSSGGVVAHDAIGNDVTTSSWLATHAAGSRELAEGIKGDATYLTVTDDKKISDYGIVAVCTHLGCVVPWSKAENKFICPCHGSQYDSTGKVVRGPAPLSLALSHVEESDGGKVTFKQWTETDFRNGEKPWW 690
            F A ++F G  V +++   +     MSAA+D+FVPDM+RR AMNLIL  S GV VLGLAVPYIAFFVP  +G++ GGV+A DA+G DVT   WL TH  GSREL EGIKGDATYLTV  DK I D+GIVAVCTHLGCVVPW +AENKFICPCHGSQY++ GKVVRGPAPLSLALSH++ ++ GKV FK WTETDFR GE PWW
Sbjct:   20 FVAPSSFAGAKVVSKAVTKSVARTSMSAAEDAFVPDMNRRVAMNLILAGSAGVVVLGLAVPYIAFFVPKSAGNAGGGVIARDAVGQDVTVEGWLGTHLPGSRELVEGIKGDATYLTVKQDKTIQDFGIVAVCTHLGCVVPWVQAENKFICPCHGSQYNADGKVVRGPAPLSLALSHID-TESGKVVFKPWTETDFRTGEAPWW 221
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BLAST of mRNA_H-paniculata_contig4741.11781.1 vs. uniprot
Match: A0A7S1U2M5_9STRA (Plastoquinol--plastocyanin reductase n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U2M5_9STRA)

HSP 1 Score: 265 bits (678), Expect = 1.950e-81
Identity = 123/182 (67.58%), Postives = 144/182 (79.12%), Query Frame = 1 
Query:  145 RPMRMSAADDSFVPDMSRRQAMNLILFSSLGVNVLGLAVPYIAFFVPPGSGDSSGGVVAHDAIGNDVTTSSWLATHAAGSRELAEGIKGDATYLTVTDDKKISDYGIVAVCTHLGCVVPWSKAENKFICPCHGSQYDSTGKVVRGPAPLSLALSHVEESDGGKVTFKQWTETDFRNGEKPWW 690
            R M M+A++D+FVPDM RR  MN IL +S+GV  LG+AVPYI+FFVP GSG    G +A DA+GNDVT S WL TH AG+REL +G+KGDATYL V DDK + +YG+ AVCTHLGCVVPW+ A+ KF+CPCHGSQY+  GKVVRGPAPLSLAL+HVE  DG KV F  WTETDFR GE PWW
Sbjct:  118 RAMTMAASEDAFVPDMDRRNVMNAILTASVGVAGLGMAVPYISFFVPAGSGGGGSGTIAKDALGNDVTESGWLGTHNAGARELVQGLKGDATYLIVNDDKTLENYGLSAVCTHLGCVVPWNAAQGKFMCPCHGSQYNKEGKVVRGPAPLSLALAHVENKDG-KVVFTPWTETDFRTGEAPWW 298
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BLAST of mRNA_H-paniculata_contig4741.11781.1 vs. uniprot
Match: W7TXJ0_9STRA (Plastoquinol--plastocyanin reductase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TXJ0_9STRA)

HSP 1 Score: 256 bits (654), Expect = 9.800e-79
Identity = 120/180 (66.67%), Postives = 140/180 (77.78%), Query Frame = 1 
Query:  151 MRMSAADDSFVPDMSRRQAMNLILFSSLGVNVLGLAVPYIAFFVPPGSGDSSGGVVAHDAIGNDVTTSSWLATHAAGSRELAEGIKGDATYLTVTDDKKISDYGIVAVCTHLGCVVPWSKAENKFICPCHGSQYDSTGKVVRGPAPLSLALSHVEESDGGKVTFKQWTETDFRNGEKPWW 690
            M  +  ++ FVPDM RR+ MN IL  S+G+NV GLAVPYIAFFVP   G + GG+ A DA+G+DVT   WL+TH AG R L +G+KGDATYL V +DK I +YG+ AVCTHLGCVVPW+KAE+KFICPCHGSQYD TGKVVRGPAPLSLAL+HV+ESDG KV    WTETDFR    PWW
Sbjct:   58 MAEAVGEEPFVPDMDRRKLMNTILLGSVGLNVAGLAVPYIAFFVPRTGGGAGGGLAAKDALGDDVTVQGWLSTHQAGDRSLVQGLKGDATYLIVKEDKTIENYGLNAVCTHLGCVVPWNKAESKFICPCHGSQYDKTGKVVRGPAPLSLALAHVKESDG-KVLLTPWTETDFRTDTAPWW 236
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BLAST of mRNA_H-paniculata_contig4741.11781.1 vs. uniprot
Match: A0A835ZDT9_9STRA (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDT9_9STRA)

HSP 1 Score: 253 bits (647), Expect = 4.000e-78
Identity = 125/183 (68.31%), Postives = 142/183 (77.60%), Query Frame = 1 
Query:  157 MSAADDSFVPDMSRRQAMNLILFSSLGVNVLGLAVPYIAFFVPP-GSGDSSGGVVAHDAIGNDVTTSSWLATHAAGSRELAEGIKGDATYLTVTDD----KKISDYGIVAVCTHLGCVVPWSKAENKFICPCHGSQYDSTGKVVRGPAPLSLALSHVEESDGGKVTFKQWTETDFRNGEKPWW 690
            MSAAD+++VPDM RRQA+NLIL S  GV VLGLA+PY+A FVP    G  SG VVA DA+G +VT+  WLATH  GSREL EG+KGDATYL V  D    K I D GIVAVCTH+GCVVPW+ AENKFICPCH SQYD+ G+VVRGPAPLSLALSHV+ +  GKV  + WTETDFR GE PWW
Sbjct:   26 MSAADEAYVPDMGRRQALNLILVSFTGVTVLGLAIPYVALFVPKHAEGGRSGSVVARDALGQEVTSEGWLATHLPGSRELVEGMKGDATYLIVDKDELHGKAIRDLGIVAVCTHMGCVVPWNAAENKFICPCHASQYDANGRVVRGPAPLSLALSHVD-TGSGKVLLRPWTETDFRTGEAPWW 207
[Close]
BLAST of mRNA_H-paniculata_contig4741.11781.1 vs. uniprot
Match: A0A8J5X155_DIALT (Rieske domain-containing protein n=3 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X155_DIALT)

HSP 1 Score: 245 bits (626), Expect = 7.790e-75
Identity = 119/178 (66.85%), Postives = 130/178 (73.03%), Query Frame = 1 
Query:  157 MSAADDSFVPDMSRRQAMNLILFSSLGVNVLGLAVPYIAFFVPPGSGDSSGGVVAHDAIGNDVTTSSWLATHAAGSRELAEGIKGDATYLTVTDDKKISDYGIVAVCTHLGCVVPWSKAENKFICPCHGSQYDSTGKVVRGPAPLSLALSHVEESDGGKVTFKQWTETDFRNGEKPWW 690
            M+AADD FVPDM RR  MN +L  +  V  L LA  Y  FF PPGS     GV AHDA+G+DVT   WLATH AG R+L EG+KGDATYL VT DKKI  Y + AVCTHLGCVVPW+ A+ KFICPCHGSQYDSTGKVVRGPAPLSLAL+HV   D GKV    WTETDFR G  PWW
Sbjct:   41 MAAADDGFVPDMERRVIMNALLVGATAVPGLWLAGGYAYFFAPPGSXXXXXGVTAHDALGDDVTVEKWLATHPAGDRKLVEGLKGDATYLIVTPDKKIETYALNAVCTHLGCVVPWNAAQQKFICPCHGSQYDSTGKVVRGPAPLSLALAHVN-GDSGKVVLSTWTETDFRTGLAPWW 217
[Close]
BLAST of mRNA_H-paniculata_contig4741.11781.1 vs. uniprot
Match: A0A8K1ZZD0_9CYAN (Cytochrome b6-f complex iron-sulfur subunit n=1 Tax=Petrachloros mirabilis ULC683 TaxID=2781853 RepID=A0A8K1ZZD0_9CYAN)

HSP 1 Score: 241 bits (616), Expect = 6.780e-74
Identity = 106/170 (62.35%), Postives = 130/170 (76.47%), Query Frame = 1 
Query:  181 VPDMSRRQAMNLILFSSLGVNVLGLAVPYIAFFVPPGSGDSSGGVVAHDAIGNDVTTSSWLATHAAGSRELAEGIKGDATYLTVTDDKKISDYGIVAVCTHLGCVVPWSKAENKFICPCHGSQYDSTGKVVRGPAPLSLALSHVEESDGGKVTFKQWTETDFRNGEKPWW 690
            VPDM RRQ MN + F ++    LG   P + +F+PP SG S  GV A DA+GND+  S ++ATH AG R LA+G+KGD TY+ VT+D+ ++DYG+ AVCTHLGCVVPW+  ENKFICPCHGSQYDSTGKVVRGPAPLSLAL+H   ++G K+ F QWTETDFR G+ PWW
Sbjct:   10 VPDMGRRQFMNFLAFGTITGTALGALYPIVKYFIPPSSGSSGSGVTAKDALGNDLVVSDFIATHPAGERTLAQGLKGDPTYVIVTEDQTLADYGLSAVCTHLGCVVPWNAGENKFICPCHGSQYDSTGKVVRGPAPLSLALAHATVTEGDKLVFSQWTETDFRTGKDPWW 179
[Close]
BLAST of mRNA_H-paniculata_contig4741.11781.1 vs. uniprot
Match: W9R0C1_9ROSA (Plastoquinol--plastocyanin reductase n=1 Tax=Morus notabilis TaxID=981085 RepID=W9R0C1_9ROSA)

HSP 1 Score: 242 bits (618), Expect = 1.920e-73
Identity = 115/199 (57.79%), Postives = 142/199 (71.36%), Query Frame = 1 
Query:  112 AVSTRSAVAASRPMRM-----SAADDSFVPDMSRRQAMNLILFSSLGVNVLGLAVPYIAFFVPPGSGDSSGGVVAHDAIGNDVTTSSWLATHAAGSRELAEGIKGDATYLTVTDDKKISDYGIVAVCTHLGCVVPWSKAENKFICPCHGSQYDSTGKVVRGPAPLSLALSHVEES-DGGKVTFKQWTETDFRNGEKPWW 690
            A  ++SAV   + MR+     S   D  VPDM +RQ +NL+L  ++ +   G+ +PY +FF PPGSG + GG VA DA+GNDV  S WL TH  G R L +G+KGD TYL V +DK ++ YGI AVCTHLGCVVPW+KAENKFICPCHGSQY+  G+VVRGPAPLSLAL+H + + D GKV F  W ETDFR GE+PWW
Sbjct:   33 AAKSQSAVVKGKGMRIACQATSVPADDRVPDMGKRQLLNLLLLGAISLPSAGMLIPYASFFAPPGSGGAGGGTVAKDAVGNDVIASEWLKTHGPGDRTLTQGLKGDPTYLVVENDKTLATYGINAVCTHLGCVVPWNKAENKFICPCHGSQYNERGRVVRGPAPLSLALAHADVNVDDGKVVFVPWVETDFRTGEEPWW 231
[Close]
BLAST of mRNA_H-paniculata_contig4741.11781.1 vs. uniprot
Match: UPI00140DE06B (cytochrome b6-f complex iron-sulfur subunit n=1 Tax=Aphanocapsa montana TaxID=327565 RepID=UPI00140DE06B)

HSP 1 Score: 239 bits (611), Expect = 3.770e-73
Identity = 105/170 (61.76%), Postives = 130/170 (76.47%), Query Frame = 1 
Query:  181 VPDMSRRQAMNLILFSSLGVNVLGLAVPYIAFFVPPGSGDSSGGVVAHDAIGNDVTTSSWLATHAAGSRELAEGIKGDATYLTVTDDKKISDYGIVAVCTHLGCVVPWSKAENKFICPCHGSQYDSTGKVVRGPAPLSLALSHVEESDGGKVTFKQWTETDFRNGEKPWW 690
            VPDM RRQ MNL+ F ++    LG   P + +F+PP SG + GGVVA DA+GND+  S++L TH+AG R LA+G+KGD TY+ + DD+ I DYG+ AVCTHLGCVVPW+  +NKF+CPCHGSQYDSTGKVVRGPAPLSLAL H   S+  K+ F  WTETDFR G++PWW
Sbjct:   10 VPDMGRRQFMNLLTFGTITGTALGALYPIVKYFIPPSSGGTGGGVVAKDALGNDIVASAYLETHSAGDRSLAQGLKGDPTYVVIQDDQTIGDYGLNAVCTHLGCVVPWNAGQNKFMCPCHGSQYDSTGKVVRGPAPLSLALVHANVSEDDKLVFTPWTETDFRTGKEPWW 179
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4741.11781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL45_ECTSI2.130e-9869.60Plastoquinol--plastocyanin reductase n=2 Tax=Ectoc... [more]
A0A836CBH8_9STRA8.040e-9265.32Plastoquinol--plastocyanin reductase n=1 Tax=Tribo... [more]
A0A835YPA4_9STRA2.010e-8967.98Plastoquinol--plastocyanin reductase n=1 Tax=Tribo... [more]
A0A7S1U2M5_9STRA1.950e-8167.58Plastoquinol--plastocyanin reductase n=2 Tax=Phaeo... [more]
W7TXJ0_9STRA9.800e-7966.67Plastoquinol--plastocyanin reductase n=2 Tax=Monod... [more]
A0A835ZDT9_9STRA4.000e-7868.31Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
A0A8J5X155_DIALT7.790e-7566.85Rieske domain-containing protein n=3 Tax=Diacronem... [more]
A0A8K1ZZD0_9CYAN6.780e-7462.35Cytochrome b6-f complex iron-sulfur subunit n=1 Ta... [more]
W9R0C1_9ROSA1.920e-7357.79Plastoquinol--plastocyanin reductase n=1 Tax=Morus... [more]
UPI00140DE06B3.770e-7361.76cytochrome b6-f complex iron-sulfur subunit n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4741contigH-paniculata_contig4741:7552..14511 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score306.6
Seed ortholog evalue9.7e-81
Seed eggNOG ortholog2880.D7FL45
Preferred namePETC
KEGG rclassRC01002
KEGG koko:K02636
KEGG ReactionR03817,R08409
KEGG Pathwayko00195,ko01100,map00195,map01100
KEGG ModuleM00162
Hectar predicted targeting categorychloroplast
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006091,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0009055,GO:0009314,GO:0009416,GO:0009507,GO:0009512,GO:0009526,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009767,GO:0009941,GO:0009987,GO:0010196,GO:0015979,GO:0016020,GO:0016491,GO:0019684,GO:0022900,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0032991,GO:0034357,GO:0042651,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046028,GO:0050896,GO:0051704,GO:0051707,GO:0055035,GO:0055114,GO:0070069,GO:0071944,GO:0080167,GO:0098542,GO:1990066
EggNOG free text desc.oxidoreductase activity, acting on diphenols and related substances as donors
EggNOG OGsCOG0723@1,KOG1671@2759
EC1.10.9.1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194,ko01000
Exons5
Model size1633
Cds size684
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930409.1488056-UTR-H-paniculata_contig4741:7551..84881622930409.1488056-UTR-H-paniculata_contig4741:7551..8488Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4741 7552..8488 -
1691481278.6917524-UTR-H-paniculata_contig4741:7551..84881691481278.6917524-UTR-H-paniculata_contig4741:7551..8488Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4741 7552..8488 -
1622930409.2488542-UTR-H-paniculata_contig4741:14499..145111622930409.2488542-UTR-H-paniculata_contig4741:14499..14511Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4741 14500..14511 -
1691481278.7618504-UTR-H-paniculata_contig4741:14499..145111691481278.7618504-UTR-H-paniculata_contig4741:14499..14511Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4741 14500..14511 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930409.161859-CDS-H-paniculata_contig4741:8488..85341622930409.161859-CDS-H-paniculata_contig4741:8488..8534Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4741 8489..8534 -
1691481278.7113864-CDS-H-paniculata_contig4741:8488..85341691481278.7113864-CDS-H-paniculata_contig4741:8488..8534Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4741 8489..8534 -
1622930409.1746485-CDS-H-paniculata_contig4741:8892..89751622930409.1746485-CDS-H-paniculata_contig4741:8892..8975Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4741 8893..8975 -
1691481278.726143-CDS-H-paniculata_contig4741:8892..89751691481278.726143-CDS-H-paniculata_contig4741:8892..8975Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4741 8893..8975 -
1622930409.1978412-CDS-H-paniculata_contig4741:9463..96221622930409.1978412-CDS-H-paniculata_contig4741:9463..9622Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4741 9464..9622 -
1691481278.7342396-CDS-H-paniculata_contig4741:9463..96221691481278.7342396-CDS-H-paniculata_contig4741:9463..9622Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4741 9464..9622 -
1622930409.2152665-CDS-H-paniculata_contig4741:10405..106871622930409.2152665-CDS-H-paniculata_contig4741:10405..10687Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4741 10406..10687 -
1691481278.744216-CDS-H-paniculata_contig4741:10405..106871691481278.744216-CDS-H-paniculata_contig4741:10405..10687Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4741 10406..10687 -
1622930409.2317233-CDS-H-paniculata_contig4741:14385..144991622930409.2317233-CDS-H-paniculata_contig4741:14385..14499Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4741 14386..14499 -
1691481278.7541218-CDS-H-paniculata_contig4741:14385..144991691481278.7541218-CDS-H-paniculata_contig4741:14385..14499Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4741 14386..14499 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4741.11781.1prot_H-paniculata_contig4741.11781.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4741 8489..14499 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4741.11781.1

>prot_H-paniculata_contig4741.11781.1 ID=prot_H-paniculata_contig4741.11781.1|Name=mRNA_H-paniculata_contig4741.11781.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=228bp
MLFKILSLAALAMTPSAYGFVAPFAATTAFRGNAVSTRSAVAASRPMRMS
AADDSFVPDMSRRQAMNLILFSSLGVNVLGLAVPYIAFFVPPGSGDSSGG
VVAHDAIGNDVTTSSWLATHAAGSRELAEGIKGDATYLTVTDDKKISDYG
IVAVCTHLGCVVPWSKAENKFICPCHGSQYDSTGKVVRGPAPLSLALSHV
EESDGGKVTFKQWTETDFRNGEKPWWT*
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mRNA from alignment at H-paniculata_contig4741:7552..14511-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4741.11781.1 ID=mRNA_H-paniculata_contig4741.11781.1|Name=mRNA_H-paniculata_contig4741.11781.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6960bp|location=Sequence derived from alignment at H-paniculata_contig4741:7552..14511- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATACCCACAACGATGTTGTTCAAGATCCTTTCACTCGCCGCCCTGGCGAT
GACCCCCTCAGCTTATGGATTTGTGGCTCCTTTCGCGGCGACCACCGCAT
TCAGGGGTAATGCTGTGTCGACAAGGGTAAGTACTCTTATTTTGCTCGTG
GGAGCTCTTCTTTGTTCATGGGATGCGTTCGTGGGCTTGGGCCGATTGTC
ATGGCTGTGCATGCGGTTAGCAGGGCGGTATTCGTGGTGACGCGCAGTTA
TCATGATCTGGTGATGGAGTGAAGGATGTGGTTGGATTTGAGATGGGGTC
AGATTTCGCTACGGCTTAGTATCGGTCGAGAACAGACGCTGTTCATGTAC
GGTGTTGGCTAGCGATTCGGGGTGTTCATTTTTGGAAGCTTGTTTGCGGA
AGCGATCTTGCTGCACCTCCGCCCGTCGAAACTTATGCCCAGCTTCGAAC
AAGCTAGTGCATTCTACAACAACCTCGTCGAGTGATGCGTGTCTAGCGAG
TATCTAACGTGTATCTGTTTCACTTTGACTCAAGGTGAGGTTTATTGAAC
TGGATCCCTGCAGGGGTAGCCGGATGCACCAACAGGGTAACACATCCCGC
CAGCCTCCCAATTTTGTTTTCAGGGGTGATGAGAAATGGTTTGGGGTTAG
AGAATGACGGGAGTAGTCTCTAACCCTTGTTCATGATACATTACAATCTC
TATTCCAATATCACATGAGACATGTGCATGCGAACTCATCCCTTACTGTC
ATGGATGTGTCGCAAGCACGGGGCCAAAATTGACTGAGCCGGACAACAGC
TTGATTAACATTGTATGTACTCCGTGTTTAAATCGGTGCAGATGTTTCTT
TTCTTTTTTTGGCCACCTGGACTCGAGTTGAACCCAGTACCCAACCAGAC
CCAGAGAGATACTCACGTCATTCACTAATGGCCCTGGGTTGAAGACGCGG
TGGATAGACCTCCGAACTCGGAATATGAACATATGAGCCAAGCGAATGAT
ACCAATGCTCTAGAATTGGAAGTCCGGATGGCTGTGGGTTCTTTGCTCCT
GCGATTTTGTATTCCACAACATACGAAAGCGTCATGTGCCATGTCATGTA
CATTCTGTACTACAAACGACTGTATTTTTTGTGTCGACAAACCAGATGAA
CACTAATTTCGTCAACTTATACATGCAACCCGTTGCCATCTAGTATGGCA
CAGCGCAGAAATGATTTTCAGTATGTTGGTCGAAGTTGATCCTTTTTGTT
CAGTGTTGACTTGGGGTTATGGACTCAACTGAAGGTACGAGATCCTAATG
TATCATACGTCGGCACTACGACATTTGAACAAGGAGAGGTAGTTCTGTTC
TCAAAACTAATCGGAGCGAATGACTCAGTGTTCGATCCATTTGAAGGCCA
AGGCGTGGAATCTGATCTGTCTGTGTTCAGATCATCGTAAACAACCAACA
CAGCTTCTTCACCAATAGTTTCATGTGACACTGGAAGCAGCACACCATAG
TAGAGGTATCGAGTGAACAACTGACGTTTGTTCTCGCGTCACTTCACCTA
CAGTACATCAGTTGCATACATGTAAATAGCTCGTGCTTCCTACTGTGCGC
TGTGTCTGATCCTCGTGTGCACCAGAATATGGTGACATCGCCTGGCCAAG
TACATTTCAGTTGACCTTGGTGCATGTTCCTGAACCATCGCTGTGTACTT
TGATAGTTCCAGTGGCGAAAACTGCTCTGGGTCTGTGGCTCCGTTGTCGT
CGTGTGATGCGCCATTAGCATGTGAAGTAAAGAGGTCATGACTATGCTAG
AAGCGGCCCCACAGTGAGTAGTTTTGGGGGGGTGTTTCCCCAGTTCTGGT
GAGATGGGCTTGTTGGAACTTCATCGAAGTTGACAGGGCAGATATTCAAT
GCCGCTGGAGTGATGAACACGGGAGTTTCTGGGGGATAATGACTGTGATG
AAGAGCCGTCTTCATTGGTACAATTGGTGACATTGCCTCCAGTCTGTGCT
GGAGGTGGTATCTTCCGTTTTTGCATAATATCTTCGGCCCTGTTGGTCCG
GAGGGACAAGCTCTTCCCTTGATGTAACGAGTTTGTCGATCGACACAATC
ACCTCAACAGAGCACAACTTTTCATCCTAGGCCACAGGGATAACTCCCAT
GCTATGACGGAAGGTGCTCGATGTGGGCATCTTGTAGTCGATGTACCGCG
GTGGCCTCGATTTGCAAGAGCGAGTGAGGGTGTAGAAGAAGTTTCCGCGG
CTCCAAGCACAACTTCACGGAGTGGTCAACGGTGTTGTAATCACGCCCGC
TGCCGACCTGTTTCATGATACGGTGTCGAATTAAGGATGGTGACTATCGG
AAGTATACCCTCGATATTTCCAACTGGAAGAGTAGTGTCGTTCAACAGTC
GTGAAATTCGTAGGTGTGAAGCAATGCCCTGCCGTACTCCATCATCGACC
ATGTAGAATTTCAGAGTGTGGGGGCTGACAGAAACAACGATGAAGATCTT
CCAACAGAGCACAATGCATTTTGTATTAGTCATTTTCAGGGTCAGACTTC
TACACCTCATGTGAACCATGGGGGAAGGGGGAACCTTTGTAGACCAACTA
TGTACGTCAGTCCTGGATTACTCTCGGCTTTCCGTCACACTTCGAAATAT
AATGAATGAAAACGACGATCGCTTTAGCTTTTGTCATTATTTGGTCGAAG
TAAGCTTCATTCATCTGTTGCTGCGTCTCAGGTATATGTACGGTTCGAGG
AGTTGAACGATCCAGTTGGGTCGTCGTGCCATGACGCTGAACTGTACTGA
GTTGCCAAATGTGGAAGCTTCGTAACAGTGAATGTAATCCTGTCCGACCT
GAAAAGTACCGAACTGGAGGAATGCCCCACAGTCGGATGGTTCAATCTTT
GAACAGAGATCGCATGACGATACCTACTCTGACCGCGCGGGGCGAACGAT
GTTCACGAAAAAAAGAAACGAAGCATGCTAACAGACGCCGTGAAGCTGGC
AGTGTAGAGAATTTACCTGTGGGATCCCCTGGGTATTTGACCCGTCATCG
CAAACGTCTGTTCGTGACGAAGGAAGAAGATGTCGAGAGAATGTCACATG
TCCATGTTTTGCAGAGAGAAAATAGGAAGAAACAATCTCGCGATGACACC
AAAATTATCGGGGTCCAGGTCTAGTCCGACGACTAGATGCATTGTACGTT
TTGCCATAACCTATAGGCACTAGTGAGGGGATCTTACGTTAGTTTAGGTA
TAGTCATGTTAGTAACATGACAGCAATTCTACATGTCATGGAAGTGTCAT
GGCTTCTCTCGCTTGTTTGTGTATGAAAAATATAAGGACATGATTGAACT
CCAAAGTTCCAAGCCGTTGGAAAATAATACCTTATTCGAACTTTTTTGTA
CGAAGCTTGTTACGTGTTTTCTTCGTTTCAACGTTAAGCTGTTCTGCACT
GGAGGAAAAAGCACAAAAGAAGAAGTTTGACCGGCGTTGTCGTAGCCCCG
GCAAAATCCAGCTGCCACGGTCGAGCAGGTCAAAGATGCCACTCAAGCTT
TCTGGGCGGCTTTGGTTTTTCTTGTTTTAAGACCCGTAGTGATTTACCTC
CAATGCGCGGTTATTGTTCAATGTCCGCCCGAAGTAATCGTTCTTCTCAA
TGACTAGCAAGTTCGTTTTAACCCCGTCCAATCAAGTCATGAAAGTCTTT
TCGTATGAAGTGCGTTTTTCACGACTCGGTACGCTTCCGTAACACGGTCT
CGTGAAATTTCTTCCGTTCTGTTTTTCACTTGTCTTTTTTCATGGTGTGC
CCCCTTCTCCCTCGTGAACCACAGAGTGCCGTTGCGGCCTCCAGACCGAT
GCGCATGTCTGCGGCAGACGACTCTTTCGTGCCGGACATGTCCCGCCGCC
AGGCGATGAATCTTATTCTATTTTCGTCGCTTGGCGTGAATGTCTTGGGA
TTAGCGGTGCCGTACATCGCGTTCTTCGTGCCCCCGGGCAGCGGCGACTC
CTCGGGCGGTGTGGTGGCGCACGACGCCATCGGAAACGATGTGACTACGT
CGAGCTGGCTCGCGACGCATGCGGCGGGTTCGAGGGAACTTGCGGAGGGC
ATCAAGGTACCCGGTGTATGTGGATTGTCGTCTTCGTTTAGGTCCATGTT
GTGGGTCGTTCTTCTTTCATCTTTTGATGAAACACCATGTAGGTCCACAA
TTGTTCCGAACTTGCCTTGTTTTCCCCACGCTTTAAAGAGCAGTCATACT
CGCTATCCCGTGAGATATGGTCAACGTAGAACCATTAGCCGCCTCTCAAC
CGTAGGACTCTCCTCTTGTACATGGTAATCGTGAGTCAAACTTGATGCAA
GTATAGATCTCCAACTTGGGCTTTTATCAACAGGATGTTTGTGCATGGAC
ATTGTGATTCCCTGCATGGACATTGTGATTCCCTGCACATGAAATTATTC
AAATCTTTGAGGCAGACATCTTGCACATTTGGTTTCTCTTCAGAGAGGTC
ACAACTCGATTTCCCCCGTGCACTGGGGGACGGTGTAGTTCCATGAGCAT
TAACATGAAATATGGAGCATGATGGGTCATATATTGCAAGCGTTCCAGGT
ACCGTGATAAAACTGTTCGTTCCAACGACAACTAGAACCATTATAGTAGA
CTAAAAACGCTAGTGTTGACCTCTGAAAGCACCATGAAGCGTCACTGAGG
ATCGTGAACGTTCACTAGCTCATGAACCAATCAGCTGTTGTCCACTGCTT
CTCATCTTTCAACGTTGCTCATGACTAGGTAGACGGTAGTGTCGGTCAAA
CATGGTACATTTGAAATATAATACCACTTGACTATCGCGACAGATGATGA
ACATCACCCCCCTCCCCTACACTTGCGCGACTTATTCAGGGGGACGCAAC
GTACCTAACAGTTACGGATGACAAGAAGATCTCTGATTACGGTATTGTTG
CTGTGTGCACCCACCTGGGATGTGTGGTACCCTGGAGCAAGGCTGAGAAC
AAGTTCATATGCCCGTGCCACGGGTCTCAGTACGACAGCACTGGAAAGGT
GAGGTGTAGTCCGCGCTATCGATGTACCCGGTTGGCAACATATATTATAT
TGACATGCGCATGATGTACTGTCCCTATTGATCGATCCGGCCTGACAGCA
GCGGCTCAAAACGTCTGAAGTCATCTAGTAGGCCTGTGTCCCAACAGCAC
ATCGTTAGGCCGAAGAAATTTTGGTGTTGGCCGATGAATATTGGTTGGGT
TGTCAAGTTGTTTTCATGAGAACGCAAGGTAGCGTTTGAGAAAAGGGGGG
GTTATACGTGTTTTAGTAATTGGTCACTGCGCCTTCCATTCTGTGTAGCG
ATTCATCATCCAACTACTTGAAAAGCTTGTGTCCTCATGTCCTTTACCGT
GTTGCATCTTCACTATTCCGCAAGGCATCACTTGACCCTTGATCGTCGTG
CTGGGATGACCCCACGTGTATTTTTACTCGAACATTCTGCTCGATGTCCT
TATGCGGCTTGGTGTATCGACTCCGTACATCACTAGGTTGTGAGGGGGCC
CGCACCACTTTCGCTTGCCCTATCCCACGTCGAGGAATCGGATGGTGGCA
AGGTTACCTTCAAGCAGTGGTGAGTAAATCATATGGTGCCCGGTACATTG
AATTAGGTATTACCCTTTTAAAACTGAATTCCTGATGAATGGGGAACATC
CTGCTCTGTCATGTTCAGTATTTAGTGGATAGGTGTAGACCGCATCTTCG
GAGACGTAGTCAACGCCGGCCATGGTCACTGTCGCATCGTGGCCAAAAGC
CTGACAGAGAATAACTAAATAAATCGCGAAGTATCCGTAGGAGTGAAAAA
ATGTCTCCTCGTTTACTGCATCCTTCCCGCCATTACTCTTTAATCCGCTC
CCACTCTGCTGCCTTTCGTTCGCATGCTTGCTTATTTTCGTTTCCTTTTT
CCGATCAAATTTTGTTCACTTTATCAGGACCGAGACGGACTTCCGCAACG
GAGAAAAGCCGTGGTGGACTTGAACATAAATAGTCGTCAGAGCTCCTCTA
CTATTTACAAATAGACGTTATACTCAGGGAATGATGGATTTTTCAGTATG
AGTACCAGCTGTCGTTATGTTCTGCCTTCTGAGGGTTTCCTTTAGTGACA
TTTTCTGTTTATGTCCAAGCTTGTTTCCCTCTAGTACCGGTGGGGGTACC
CATGCTGGGAAGCTGGGAGAGTGTCATCAAGTATCATTATGCCTCGTAAT
AGCTCTGGGAAGGCGGAGGTTGCGGTGTTGAGTCTGGAAACTGAGATTGA
ATTGTCGCGGCAATGCTTCAGGCGAGTTTGAGTCCTCGAGGGTTGTATAC
GGGAAAGGACACGGATATACGAAGTCGTGTCGGCTTTTTTTTTTTGCAAA
TTCTCGGGTGTCTTTTGTAAAGGTGTTTTTTCCAGACCACCTGGAGAGAC
GGGAATGGCTCGTGACATTTGAATGAGGGCACATGTTCAATTGATGCTAT
TGTTGTGCGCACAATTTTCCCAGCGGGCATGCTCGAGAATCGACTGGTCT
AGGTGTATCCACGGTTGTCGAGACGTTGCGACTAAAACCTCGTTCGATTT
GCTGTCGAGATGAGGTCTATGTGTGTCAACAATACATTAGATCGAATAAT
AATGGATTGAGAGCTGACGAGAGGCCGTCCGATTTATTTTACACAGATGG
AGCAGGAACAATTGTGATCGTTTGTAGATATCCAACGCCTGATGCATCAT
GTCGAAAATATTTATGTGTGATTCACTAACCTAGGGTTTGAAATTTTCGA
CTGATCAAAACCAGTTACAACATATCATGGCCGAAAGCAAATCAATACAT
GGCATGTGGGCATCACGACGACTTCGCTTTATCGTGGGATTTACAATTGT
CATCCTGATTCGAAACTAAATTTTGAATGATCCTGCAATGTCGCCGATAT
TGAAATAAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig4741:7552..14511-

>mRNA_H-paniculata_contig4741.11781.1 ID=mRNA_H-paniculata_contig4741.11781.1|Name=mRNA_H-paniculata_contig4741.11781.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1368bp|location=Sequence derived from alignment at H-paniculata_contig4741:7552..14511- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGTTCAAGATCCTTTCACTCGCCGCCCTGGCGATGACCCCCTCAGC
TTATGGATTTGTGGCTCCTTTCGCGGCGACCACCGCATTCAGGGGTAATG
CTGTGTCGACAAGGATGTTGTTCAAGATCCTTTCACTCGCCGCCCTGGCG
ATGACCCCCTCAGCTTATGGATTTGTGGCTCCTTTCGCGGCGACCACCGC
ATTCAGGGGTAATGCTGTGTCGACAAGGAGTGCCGTTGCGGCCTCCAGAC
CGATGCGCATGTCTGCGGCAGACGACTCTTTCGTGCCGGACATGTCCCGC
CGCCAGGCGATGAATCTTATTCTATTTTCGTCGCTTGGCGTGAATGTCTT
GGGATTAGCGGTGCCGTACATCGCGTTCTTCGTGCCCCCGGGCAGCGGCG
ACTCCTCGGGCGGTGTGGTGGCGCACGACGCCATCGGAAACGATGTGACT
ACGTCGAGCTGGCTCGCGACGCATGCGGCGGGTTCGAGGGAACTTGCGGA
GGGCATCAAGAGTGCCGTTGCGGCCTCCAGACCGATGCGCATGTCTGCGG
CAGACGACTCTTTCGTGCCGGACATGTCCCGCCGCCAGGCGATGAATCTT
ATTCTATTTTCGTCGCTTGGCGTGAATGTCTTGGGATTAGCGGTGCCGTA
CATCGCGTTCTTCGTGCCCCCGGGCAGCGGCGACTCCTCGGGCGGTGTGG
TGGCGCACGACGCCATCGGAAACGATGTGACTACGTCGAGCTGGCTCGCG
ACGCATGCGGCGGGTTCGAGGGAACTTGCGGAGGGCATCAAGGGGGACGC
AACGTACCTAACAGTTACGGATGACAAGAAGATCTCTGATTACGGTATTG
TTGCTGTGTGCACCCACCTGGGATGTGTGGTACCCTGGAGCAAGGCTGAG
AACAAGTTCATATGCCCGTGCCACGGGTCTCAGTACGACAGCACTGGAAA
GGGGGACGCAACGTACCTAACAGTTACGGATGACAAGAAGATCTCTGATT
ACGGTATTGTTGCTGTGTGCACCCACCTGGGATGTGTGGTACCCTGGAGC
AAGGCTGAGAACAAGTTCATATGCCCGTGCCACGGGTCTCAGTACGACAG
CACTGGAAAGGTTGTGAGGGGGCCCGCACCACTTTCGCTTGCCCTATCCC
ACGTCGAGGAATCGGATGGTGGCAAGGTTACCTTCAAGCAGTGGTTGTGA
GGGGGCCCGCACCACTTTCGCTTGCCCTATCCCACGTCGAGGAATCGGAT
GGTGGCAAGGTTACCTTCAAGCAGTGGACCGAGACGGACTTCCGCAACGG
AGAAAAGCCGTGGTGGACTTGAGACCGAGACGGACTTCCGCAACGGAGAA
AAGCCGTGGTGGACTTGA
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