mRNA_H-paniculata_contig11839.1178.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11839.1178.1
Unique NamemRNA_H-paniculata_contig11839.1178.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig11839.1178.1 vs. uniprot
Match: A0A6H5LB76_9PHAE (PKD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LB76_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 2.220e-30
Identity = 52/64 (81.25%), Postives = 59/64 (92.19%), Query Frame = 1
Query:   67 HADEYTIPCDHAGGTFWYHPHHHGSTALQLGGGAMGALIIEDRPDVHGIPDQISSMPELVLTIQ 258
            H   YTIPCDHAGGTFWYHPHHHGST+LQ+GGGAMGAL++EDR DVHGIPDQI++MPELV+ IQ
Sbjct:  747 HTFVYTIPCDHAGGTFWYHPHHHGSTSLQMGGGAMGALVVEDRVDVHGIPDQIANMPELVMVIQ 810          
BLAST of mRNA_H-paniculata_contig11839.1178.1 vs. uniprot
Match: A0A835ZH56_9STRA (CBM6 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH56_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.470e-16
Identity = 36/61 (59.02%), Postives = 42/61 (68.85%), Query Frame = 1
Query:   79 YTIPCDHAGGTFWYHPHHHGSTALQLGGGAMGALIIEDRP-DVHGIPDQISSMPELVLTIQ 258
            YT+PCDH GGT WYHPHHHG  ALQ G GAMG LI+E  P +   +P +I  MPE  + IQ
Sbjct:  380 YTVPCDHTGGTNWYHPHHHGIVALQSGTGAMGMLIVESNPREAQDMPPEIQMMPEQFIVIQ 440          
BLAST of mRNA_H-paniculata_contig11839.1178.1 vs. uniprot
Match: A0A836CK08_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK08_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 4.630e-16
Identity = 37/61 (60.66%), Postives = 44/61 (72.13%), Query Frame = 1
Query:   79 YTIPCDHAGGTFWYHPHHHGSTALQLGGGAMGALIIEDRP-DVHGIPDQISSMPELVLTIQ 258
            YTIPCDHA GT WYHPHHHGS ALQ GGGA G L+IE    +  G P +I+++PE  + IQ
Sbjct:  646 YTIPCDHASGTNWYHPHHHGSVALQTGGGAAGMLVIEPSAREALGTPAEIAALPEQFVVIQ 706          
BLAST of mRNA_H-paniculata_contig11839.1178.1 vs. uniprot
Match: A0A7S2J6U1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2J6U1_9EUKA)

HSP 1 Score: 80.9 bits (198), Expect = 8.420e-16
Identity = 35/60 (58.33%), Postives = 44/60 (73.33%), Query Frame = 1
Query:   79 YTIPCDHAGGTFWYHPHHHGSTALQLGGGAMGALIIEDRPDVHGIPDQISSMPELVLTIQ 258
            Y IP DH GGTFWYHPHHHGSTA+Q GGGA G +I+ED   ++ +P +IS M E +  +Q
Sbjct:  158 YVIPADHMGGTFWYHPHHHGSTAIQSGGGACGMIIVEDP--INYLPTEISDMEERLFVLQ 215          
BLAST of mRNA_H-paniculata_contig11839.1178.1 vs. uniprot
Match: A0A835YUJ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUJ5_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 4.030e-15
Identity = 36/61 (59.02%), Postives = 43/61 (70.49%), Query Frame = 1
Query:   79 YTIPCDHAGGTFWYHPHHHGSTALQLGGGAMGALIIEDRP-DVHGIPDQISSMPELVLTIQ 258
            YTIPC+HA GTFWYHPH HGSTALQ  GGA G LI+E  P +    P   ++MPE +L +Q
Sbjct:  414 YTIPCEHASGTFWYHPHGHGSTALQADGGAAGMLIVEGAPRESAKFPPAYNAMPEQLLVVQ 474          
BLAST of mRNA_H-paniculata_contig11839.1178.1 vs. uniprot
Match: A0A0G4FYV0_9ALVE (Plastocyanin-like domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FYV0_9ALVE)

HSP 1 Score: 75.5 bits (184), Expect = 4.880e-14
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 1
Query:   67 HADEYTIPCDHAGGTFWYHPHHHGSTALQLGGGAMGALIIEDRPDVHGIPDQISSMPELVLTIQ 258
            H     IP +H+ GT+WYHPHHHGST+LQ+GGGA GA++IEDR     +P  I+++ E VL  Q
Sbjct:  144 HRHTIEIPDEHSPGTYWYHPHHHGSTSLQVGGGAAGAIVIEDREG--DLPPSIANLEERVLVFQ 205          
BLAST of mRNA_H-paniculata_contig11839.1178.1 vs. uniprot
Match: A0A8J1YUD3_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J1YUD3_9DINO)

HSP 1 Score: 75.1 bits (183), Expect = 6.030e-14
Identity = 35/74 (47.30%), Postives = 47/74 (63.51%), Query Frame = 1
Query:   40 SARILTTLPHADEYTIPCDHAGGTFWYHPHHHGSTALQLGGGAMGALIIEDRPDVHGIPDQISSMPELVLTIQV 261
            S ++  +   +  Y++P DH GGT WYHPHHHGSTALQ G  A GALI++D P   G+   I+SM E V  + +
Sbjct:  156 SVKLAPSTSFSYSYSVPPDHQGGTHWYHPHHHGSTALQTGAVAAGALIVDDDP-ADGLSSLITSMAEKVFVMSI 228          
BLAST of mRNA_H-paniculata_contig11839.1178.1 vs. uniprot
Match: UPI001BEE6C23 (Multicopper oxidase domain-containing protein n=2 Tax=Mycobacterium spongiae TaxID=886343 RepID=UPI001BEE6C23)

HSP 1 Score: 73.9 bits (180), Expect = 2.230e-13
Identity = 35/78 (44.87%), Postives = 49/78 (62.82%), Query Frame = 1
Query:   55 TTLPHADE----------YTIPCDHAGGTFWYHPHHHGSTALQLGGGAMGALIIEDRPDVHGIPDQISSMPELVLTIQ 258
            T LPH D           + +P DH  GTFWYHPH HG+TA+Q+  G  GALIIE+ PD + +PD++ ++ E +L +Q
Sbjct:  141 TALPHDDPDAYVGRFDFTFQLPDDHPSGTFWYHPHRHGATAMQVASGMAGALIIEE-PDDNRVPDELRNVAERILVLQ 217          
BLAST of mRNA_H-paniculata_contig11839.1178.1 vs. uniprot
Match: A0A0G4GWR9_9ALVE (Plastocyanin-like domain-containing protein (Fragment) n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GWR9_9ALVE)

HSP 1 Score: 73.9 bits (180), Expect = 2.280e-13
Identity = 32/58 (55.17%), Postives = 43/58 (74.14%), Query Frame = 1
Query:   67 HADEYTIPCDHAGGTFWYHPHHHGSTALQLGGGAMGALIIEDRPDVHGIPDQISSMPE 240
            HA    IP DH+ GT+WYHPHHHGST+LQ+GGGA GA++IEDR     +P  ++++ E
Sbjct:  563 HAYRIQIPDDHSPGTYWYHPHHHGSTSLQVGGGAAGAIVIEDREG--DLPPSVANLEE 618          
BLAST of mRNA_H-paniculata_contig11839.1178.1 vs. uniprot
Match: UPI00034AD136 (multicopper oxidase family protein n=1 Tax=Azospirillum sp. B506 TaxID=137721 RepID=UPI00034AD136)

HSP 1 Score: 73.6 bits (179), Expect = 3.130e-13
Identity = 43/86 (50.00%), Postives = 50/86 (58.14%), Query Frame = 1
Query:    7 SHLTLVIPRETSARILTTL-PHAD---EYTIPCDHAGGTFWYHPHHHGSTALQLGGGAMGALIIE-DRP---DVHGIPDQISSMPE 240
            SH   V P   S  +L ++ P  D   EY IP DH  GTFWYHPH HGSTALQ+G G  G LII  DRP   D +G  D + S P+
Sbjct:  157 SHGVWVSPTGNSDNVLVSINPGVDFEYEYNIPADHPAGTFWYHPHRHGSTALQVGSGMAGTLIIRGDRPPTPDANGDLDTLLSSPK 242          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11839.1178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LB76_9PHAE2.220e-3081.25PKD domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835ZH56_9STRA2.470e-1659.02CBM6 domain-containing protein n=1 Tax=Tribonema m... [more]
A0A836CK08_9STRA4.630e-1660.66Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S2J6U1_9EUKA8.420e-1658.33Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A835YUJ5_9STRA4.030e-1559.02Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0G4FYV0_9ALVE4.880e-1453.13Plastocyanin-like domain-containing protein n=1 Ta... [more]
A0A8J1YUD3_9DINO6.030e-1447.30Hypothetical protein n=1 Tax=Amoebophrya sp. A25 T... [more]
UPI001BEE6C232.230e-1344.87Multicopper oxidase domain-containing protein n=2 ... [more]
A0A0G4GWR9_9ALVE2.280e-1355.17Plastocyanin-like domain-containing protein (Fragm... [more]
UPI00034AD1363.130e-1350.00multicopper oxidase family protein n=1 Tax=Azospir... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11839contigH-paniculata_contig11839:7507..7785 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score70.5
Seed ortholog evalue4.8e-10
Seed eggNOG ortholog323098.Nwi_2661
KEGG rclassRC00086,RC00092
KEGG koko:K00368,ko:K00423
KEGG ReactionR00068,R00783,R00785
KEGG Pathwayko00053,ko00910,ko01100,ko01120,map00053,map00910,map01100,map01120
KEGG ModuleM00529
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Multicopper oxidase
EggNOG OGs1MU0J@1224,2U19S@28211,3JXX9@41294,COG2132@1,COG2132@2
EC1.10.3.3,1.7.2.1
COG Functional cat.Q
Best tax levelBradyrhizobiaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size279
Cds size279
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928894.3884838-CDS-H-paniculata_contig11839:7506..77851622928894.3884838-CDS-H-paniculata_contig11839:7506..7785Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11839 7507..7785 +
1691480659.540352-CDS-H-paniculata_contig11839:7506..77851691480659.540352-CDS-H-paniculata_contig11839:7506..7785Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11839 7507..7785 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11839.1178.1prot_H-paniculata_contig11839.1178.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11839 7507..7785 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11839.1178.1

>prot_H-paniculata_contig11839.1178.1 ID=prot_H-paniculata_contig11839.1178.1|Name=mRNA_H-paniculata_contig11839.1178.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=93bp
LCSHLTLVIPRETSARILTTLPHADEYTIPCDHAGGTFWYHPHHHGSTAL
QLGGGAMGALIIEDRPDVHGIPDQISSMPELVLTIQVRCRVQ*
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mRNA from alignment at H-paniculata_contig11839:7507..7785+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11839.1178.1 ID=mRNA_H-paniculata_contig11839.1178.1|Name=mRNA_H-paniculata_contig11839.1178.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=279bp|location=Sequence derived from alignment at H-paniculata_contig11839:7507..7785+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGTGCTCTCACCTCACGTTGGTTATCCCACGGGAAACATCTGCACGAAT CCTCACCACTTTGCCGCATGCAGATGAATATACGATACCATGCGATCATG CCGGCGGGACATTTTGGTACCACCCCCATCACCACGGATCCACGGCGCTT CAGTTGGGTGGAGGAGCAATGGGTGCACTCATCATCGAGGATCGACCAGA CGTGCACGGCATCCCCGATCAAATTTCCAGCATGCCAGAACTCGTCTTGA CAATCCAGGTGCGGTGCCGCGTACAGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig11839:7507..7785+

>mRNA_H-paniculata_contig11839.1178.1 ID=mRNA_H-paniculata_contig11839.1178.1|Name=mRNA_H-paniculata_contig11839.1178.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at H-paniculata_contig11839:7507..7785+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGTGCTCTCACCTCACGTTGGTTATCCCACGGGAAACATCTGCACGAAT
CCTCACCACTTTGCCGCATGCAGATGAATATACGATACCATGCGATCATG
CCGGCGGGACATTTTGGTACCACCCCCATCACCACGGATCCACGGCGCTT
CAGTTGGGTGGAGGAGCAATGGGTGCACTCATCATCGAGGATCGACCAGA
CGTGCACGGCATCCCCGATCAAATTTCCAGCATGCCAGAACTCGTCTTGA
CAATCCAGGTGCGGTGCCGCGTACAGTAGCTGTGCTCTCACCTCACGTTG
GTTATCCCACGGGAAACATCTGCACGAATCCTCACCACTTTGCCGCATGC
AGATGAATATACGATACCATGCGATCATGCCGGCGGGACATTTTGGTACC
ACCCCCATCACCACGGATCCACGGCGCTTCAGTTGGGTGGAGGAGCAATG
GGTGCACTCATCATCGAGGATCGACCAGACGTGCACGGCATCCCCGATCA
AATTTCCAGCATGCCAGAACTCGTCTTGACAATCCAGGTGCGGTGCCGCG
TACAGTAG
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