mRNA_H-paniculata_contig47400.11779.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig47400.11779.1
Unique NamemRNA_H-paniculata_contig47400.11779.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig47400.11779.1 vs. uniprot
Match: D8LEU7_ECTSI (Cysteine desulfurase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEU7_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 1.960e-29
Identity = 56/68 (82.35%), Postives = 65/68 (95.59%), Query Frame = 1
Query:    1 VSDLGVDMLTVVGHKFGAPKGVAALYVRKGLSLPSMIHGGGQESGRRAGTENVMLIAGMGKAAEVCRV 204
            V+DLGVDMLT+VGHKFGAPKGVAAL+VR+GL+LP MIHGGGQE+GRRAGTENV+LI+GMGKAAE+  V
Sbjct:  295 VADLGVDMLTLVGHKFGAPKGVAALFVRRGLALPPMIHGGGQEAGRRAGTENVLLISGMGKAAEIVDV 362          
BLAST of mRNA_H-paniculata_contig47400.11779.1 vs. uniprot
Match: A0A7S4C1G4_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C1G4_CHRCT)

HSP 1 Score: 100 bits (250), Expect = 4.390e-24
Identity = 47/67 (70.15%), Postives = 57/67 (85.07%), Query Frame = 1
Query:    1 VSDLGVDMLTVVGHKFGAPKGVAALYVRKGLSLPSMIHGGGQESGRRAGTENVMLIAGMGKAAEVCR 201
            V +LGVDMLT+VGHK GAPKGV ALYVR GL LP ++HGGGQE+GRRAGTE+V+L+A +G AA + R
Sbjct:  105 VRELGVDMLTLVGHKMGAPKGVGALYVRAGLKLPPLLHGGGQEAGRRAGTESVLLLAALGAAATIAR 171          
BLAST of mRNA_H-paniculata_contig47400.11779.1 vs. uniprot
Match: X1HSN1_9ZZZZ (Aminotran_5 domain-containing protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X1HSN1_9ZZZZ)

HSP 1 Score: 100 bits (248), Expect = 4.930e-24
Identity = 51/76 (67.11%), Postives = 60/76 (78.95%), Query Frame = 1
Query:    1 VSDLGVDMLTVVGHKFGAPKGVAALYVRKGLSLPSMIHGGGQESGRRAGTENVMLIAGMGKAAEVC-RVLRKNKKI 225
            V DLGVDMLT+ GHKF APKG+ ALYVRKG+ L S++HGG QESG RAGTENV  I G+GKAAE+    LR ++KI
Sbjct:   79 VEDLGVDMLTISGHKFHAPKGIGALYVRKGVELESLVHGGRQESGLRAGTENVPSIVGLGKAAELALHTLRDSEKI 154          
BLAST of mRNA_H-paniculata_contig47400.11779.1 vs. uniprot
Match: A0A8J4FGX8_9CHLO (Aminotran_5 domain-containing protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4FGX8_9CHLO)

HSP 1 Score: 102 bits (254), Expect = 7.670e-24
Identity = 47/67 (70.15%), Postives = 57/67 (85.07%), Query Frame = 1
Query:    1 VSDLGVDMLTVVGHKFGAPKGVAALYVRKGLSLPSMIHGGGQESGRRAGTENVMLIAGMGKAAEVCR 201
            V  LGVD LT+VGHKFGAPKGVAALY+R+G++LP+  HGGGQE+GRRAGTEN+M + G+G AA V R
Sbjct:  281 VEALGVDALTIVGHKFGAPKGVAALYIRRGVTLPNYFHGGGQEAGRRAGTENIMQVVGLGAAAVVAR 347          
BLAST of mRNA_H-paniculata_contig47400.11779.1 vs. uniprot
Match: A0A2P6TKZ5_CHLSO (Cysteine desulfurase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TKZ5_CHLSO)

HSP 1 Score: 101 bits (252), Expect = 9.550e-24
Identity = 46/65 (70.77%), Postives = 59/65 (90.77%), Query Frame = 1
Query:    1 VSDLGVDMLTVVGHKFGAPKGVAALYVRKGLSLPSMIHGGGQESGRRAGTENVMLIAGMGKAAEV 195
            V  LGVDMLT+VGHKFGAPKGVAALY+R+G+++  ++ GGGQE GRRAGTENV+L+AG+GKAA++
Sbjct:  223 VQQLGVDMLTIVGHKFGAPKGVAALYIRRGVAIERLLCGGGQEGGRRAGTENVLLLAGLGKAADL 287          
BLAST of mRNA_H-paniculata_contig47400.11779.1 vs. uniprot
Match: A0A8J4ASW9_9CHLO (Uncharacterized protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4ASW9_9CHLO)

HSP 1 Score: 100 bits (249), Expect = 2.710e-23
Identity = 46/67 (68.66%), Postives = 57/67 (85.07%), Query Frame = 1
Query:    1 VSDLGVDMLTVVGHKFGAPKGVAALYVRKGLSLPSMIHGGGQESGRRAGTENVMLIAGMGKAAEVCR 201
            V+ LGVD LT+VGHKFGAPKGVAALY+R G++LP+  HGGGQE+GRRAGTEN+M + G+G AA V +
Sbjct:  288 VAALGVDALTIVGHKFGAPKGVAALYIRHGVTLPNYFHGGGQEAGRRAGTENIMQVVGLGAAAAVAQ 354          
BLAST of mRNA_H-paniculata_contig47400.11779.1 vs. uniprot
Match: A0A0D2N0J3_9CHLO (Cysteine desulfurase n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2N0J3_9CHLO)

HSP 1 Score: 100 bits (249), Expect = 3.300e-23
Identity = 47/64 (73.44%), Postives = 57/64 (89.06%), Query Frame = 1
Query:    1 VSDLGVDMLTVVGHKFGAPKGVAALYVRKGLSLPSMIHGGGQESGRRAGTENVMLIAGMGKAAE 192
            V  LGVD+LTVVGHKFGAPKGVAAL++R+G+ LPS++HGGGQE G RAGTE+ +LIAG+G AAE
Sbjct:  237 VRRLGVDLLTVVGHKFGAPKGVAALFIRRGVHLPSLLHGGGQERGARAGTESTLLIAGLGAAAE 300          
BLAST of mRNA_H-paniculata_contig47400.11779.1 vs. uniprot
Match: A0A835WMZ9_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WMZ9_9CHLO)

HSP 1 Score: 100 bits (248), Expect = 3.730e-23
Identity = 47/65 (72.31%), Postives = 55/65 (84.62%), Query Frame = 1
Query:    1 VSDLGVDMLTVVGHKFGAPKGVAALYVRKGLSLPSMIHGGGQESGRRAGTENVMLIAGMGKAAEV 195
            V  LGVD++TVVGHKFGAPKGVAALYVR+G SLP+  +GGGQE GRRAGTENVM + G+G AA +
Sbjct:  224 VGALGVDLMTVVGHKFGAPKGVAALYVRRGTSLPNYFYGGGQEGGRRAGTENVMQVVGLGAAAHI 288          
BLAST of mRNA_H-paniculata_contig47400.11779.1 vs. uniprot
Match: D8U8R1_VOLCA (Uncharacterized protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8U8R1_VOLCA)

HSP 1 Score: 99.8 bits (247), Expect = 4.030e-23
Identity = 46/67 (68.66%), Postives = 55/67 (82.09%), Query Frame = 1
Query:    1 VSDLGVDMLTVVGHKFGAPKGVAALYVRKGLSLPSMIHGGGQESGRRAGTENVMLIAGMGKAAEVCR 201
            V  LGVD LT+VGHKFGAPKGVAALY+R+G+ L +  HGGGQE GRRAGTEN+M + G+G AAE+ R
Sbjct:  196 VRTLGVDALTIVGHKFGAPKGVAALYIRRGVHLDNYFHGGGQEGGRRAGTENIMQVVGLGAAAELAR 262          
BLAST of mRNA_H-paniculata_contig47400.11779.1 vs. uniprot
Match: E1ZDB8_CHLVA (Aminotran_5 domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZDB8_CHLVA)

HSP 1 Score: 99.8 bits (247), Expect = 4.610e-23
Identity = 48/65 (73.85%), Postives = 56/65 (86.15%), Query Frame = 1
Query:    1 VSDLGVDMLTVVGHKFGAPKGVAALYVRKGLSLPSMIHGGGQESGRRAGTENVMLIAGMGKAAEV 195
            V  LGVDMLTVV HKFG PKGVAALYVR+G+ L  ++ GGGQE GRRAGTENV+L+AG+GKAAE+
Sbjct:  214 VQQLGVDMLTVVAHKFGGPKGVAALYVRRGVRLERLLCGGGQEGGRRAGTENVVLVAGLGKAAEL 278          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig47400.11779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEU7_ECTSI1.960e-2982.35Cysteine desulfurase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A7S4C1G4_CHRCT4.390e-2470.15Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
X1HSN1_9ZZZZ4.930e-2467.11Aminotran_5 domain-containing protein (Fragment) n... [more]
A0A8J4FGX8_9CHLO7.670e-2470.15Aminotran_5 domain-containing protein n=1 Tax=Volv... [more]
A0A2P6TKZ5_CHLSO9.550e-2470.77Cysteine desulfurase n=1 Tax=Chlorella sorokiniana... [more]
A0A8J4ASW9_9CHLO2.710e-2368.66Uncharacterized protein n=1 Tax=Volvox africanus T... [more]
A0A0D2N0J3_9CHLO3.300e-2373.44Cysteine desulfurase n=1 Tax=Monoraphidium neglect... [more]
A0A835WMZ9_9CHLO3.730e-2372.31Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
D8U8R1_VOLCA4.030e-2368.66Uncharacterized protein n=1 Tax=Volvox carteri f. ... [more]
E1ZDB8_CHLVA4.610e-2373.85Aminotran_5 domain-containing protein n=1 Tax=Chlo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig47400contigH-paniculata_contig47400:261..488 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score91.3
Seed ortholog evalue1.9e-16
Seed eggNOG ortholog3067.XP_002955039.1
KEGG rclassRC01789,RC02313
KEGG koko:K04487
KEGG ReactionR07460,R11528,R11529
KEGG Pathwayko00730,ko01100,ko04122,map00730,map01100,map04122
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Aminotransferase class-V
EggNOG OGs34H8Y@3041,37MHQ@33090,COG1104@1,KOG1549@2759
EC2.8.1.7
COG Functional cat.E
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02048,ko03016,ko03029
Exons1
Model size228
Cds size207
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930408.914298-UTR-H-paniculata_contig47400:260..2811622930408.914298-UTR-H-paniculata_contig47400:260..281Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig47400 261..281 +
1691481278.619125-UTR-H-paniculata_contig47400:260..2811691481278.619125-UTR-H-paniculata_contig47400:260..281Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig47400 261..281 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930408.950422-CDS-H-paniculata_contig47400:281..4881622930408.950422-CDS-H-paniculata_contig47400:281..488Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47400 282..488 +
1691481278.629429-CDS-H-paniculata_contig47400:281..4881691481278.629429-CDS-H-paniculata_contig47400:281..488Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47400 282..488 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig47400.11779.1prot_H-paniculata_contig47400.11779.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig47400 282..488 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig47400.11779.1

>prot_H-paniculata_contig47400.11779.1 ID=prot_H-paniculata_contig47400.11779.1|Name=mRNA_H-paniculata_contig47400.11779.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=69bp
MLTVVGHKFGAPKGVAALYVRKGLSLPSMIHGGGQESGRRAGTENVMLIA
GMGKAAEVCRVLRKNKKI*
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mRNA from alignment at H-paniculata_contig47400:261..488+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig47400.11779.1 ID=mRNA_H-paniculata_contig47400.11779.1|Name=mRNA_H-paniculata_contig47400.11779.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=228bp|location=Sequence derived from alignment at H-paniculata_contig47400:261..488+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTCGGATCTCGGCGTGGACATGCTCACGGTGGTGGGACACAAATTTGG GGCTCCAAAAGGCGTGGCCGCCCTGTACGTGAGAAAGGGATTGTCCCTAC CTTCCATGATTCATGGGGGGGGGCAGGAGTCGGGACGGCGGGCGGGGACA GAGAACGTCATGCTTATTGCAGGGATGGGCAAGGCGGCGGAGGTGTGTCG TGTCTTGCGAAAAAACAAGAAAATATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig47400:261..488+

>mRNA_H-paniculata_contig47400.11779.1 ID=mRNA_H-paniculata_contig47400.11779.1|Name=mRNA_H-paniculata_contig47400.11779.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at H-paniculata_contig47400:261..488+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCACGGTGGTGGGACACAAATTTGGGGCTCCAAAAGGCGTGGCCGC
CCTGTACGTGAGAAAGGGATTGTCCCTACCTTCCATGATTCATGGGGGGG
GGCAGGAGTCGGGACGGCGGGCGGGGACAGAGAACGTCATGCTTATTGCA
GGGATGGGCAAGGCGGCGGAGGTGTGTCGTGTCTTGCGAAAAAACAAGAA
AATATGAATGCTCACGGTGGTGGGACACAAATTTGGGGCTCCAAAAGGCG
TGGCCGCCCTGTACGTGAGAAAGGGATTGTCCCTACCTTCCATGATTCAT
GGGGGGGGGCAGGAGTCGGGACGGCGGGCGGGGACAGAGAACGTCATGCT
TATTGCAGGGATGGGCAAGGCGGCGGAGGTGTGTCGTGTCTTGCGAAAAA
ACAAGAAAATATGA
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