mRNA_H-paniculata_contig4740.11777.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4740.11777.1
Unique NamemRNA_H-paniculata_contig4740.11777.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4740.11777.1 vs. uniprot
Match: D8LGM2_ECTSI (20S proteasome alpha subunit G n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGM2_ECTSI)

HSP 1 Score: 293 bits (750), Expect = 1.100e-90
Identity = 207/474 (43.67%), Postives = 262/474 (55.27%), Query Frame = 3 
Query:  123 QGVVEASSRSVESGFDTNIGVFSPSGRLLQLDYVEGIVKRGNLCVGAECKDGVVLVTNKLMSADAAKLVGEEGGVRRIYRVDSHIGLLPAGLPADGRALAHKAMEYCRLHRREYGEPIPGRILAERLGEFLHAAIVRWGSRAYPNTVFIACXXXXXXXXXXXXXVMEEVGKCQGTEKDDVMLEEQGN--AGGDDGDVSAATVKDEANFASTAKGEQETVASGTEGA-HEQRERVVAEPTAVG-------------GVVDRRNERFRLYVVEPSGVARRYRAACTGKGSANTYQWLHRRSSPVIVDKDSTTKKVPNTTIT----TATAAEE--GAWVGHKGGRGRVGRRFQHGAQTDDDDGYEDENEDRGSDSDEMERXXKQKDDRGGKEGDEGQEEGNSGAKWQRRPQRTGCRLLSEMTCAEASKALVRAAR---LGFTSKGGGG----VVGVPEVAWITSAAGDAAKFVHDKS 1457
            Q V E SSRS ES +D+N GVFSP GRL+QLDYVEG+VKRGNLC+GAECKDGVVL+TNKL++ADAAKL+  +GG RR++RVDSHIG+LPAGLPADGRALAHKAMEYCR HRREYGEPIPGR+LAERLGEF+HAA VRWGSRAYPN +F+AC                     +G       L  +G   +GG D ++     K  +   +      E    G E   H+ R+ V                     G+V  R+  F+LYVV+P G  RR+RAACTG+GS+   +WLHRR +       +  K+  +   +    +A+A  E  G W    GGR               DD  E++ +DR         XX                    G +  +R +R      S+MTCAEA++A+VR AR    G   K GGG    V G+PEVAW++   G    FVH +S
Sbjct:   18 QHVAEGSSRSAESAYDSNKGVFSPKGRLVQLDYVEGLVKRGNLCIGAECKDGVVLMTNKLVTADAAKLL-VDGGTRRVFRVDSHIGILPAGLPADGRALAHKAMEYCRSHRREYGEPIPGRLLAERLGEFIHAACVRWGSRAYPNALFVACWG-------------------EGAPDTPASLRSEGGHRSGGSDANIVVTGGKSVSKPETKETAVVEKGGGGVEPVLHDDRQPVXXXXXXXXXXXXXXXXXDDGEGLVMDRDAGFQLYVVDPGGAVRRHRAACTGRGSSRARKWLHRRVTGAAAPAPAPGKEAVSGGASGVGPSASAEREKNGGWSPEAGGR---------------DDAAEEDGDDRSX----XXXXXXXXXXXXXXXXXXXXXXXXXGVR--QRGRRRQQPPFSQMTCAEAARAMVREARRVRAGEPGKAGGGGSEAVAGLPEVAWLSIDKGGEPVFVHHRS 450
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BLAST of mRNA_H-paniculata_contig4740.11777.1 vs. uniprot
Match: A0A835ZBF0_9STRA (Nucleophile aminohydrolase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBF0_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.460e-26
Identity = 64/146 (43.84%), Postives = 79/146 (54.11%), Query Frame = 3 
Query:  138 ASSRSVESGFDTNIGVFSPSGRLLQLDYVEGIVKRGNLCVGAECKDGVVLVTNKLMSADAAKLVGEEGGVRRIYRVDSHIGLLPAGLPADGRALAHKAMEYCRLHRREYGEPIPGRILAERLGEFLHAAIVRWGSRAYPNTVFIAC 575
            A++   +  +D    VFSP G+LLQ +Y    V RG  CVG  C DG VL   KL  A    L  E    RRIYRV   +G+LPAGL ADGR +   A E  R HR  YGEP+ GR+LA +LG FLH   +    R    +  +AC
Sbjct:   13 ATAAIADGPYDKAGNVFSPQGKLLQSEYARLAVNRGATCVGMSCSDGTVLAIRKLSQAKTPSLKPERS-TRRIYRVGDAVGVLPAGLSADGRFVGATAAELVRRHRASYGEPLSGRVLAVQLGVFLHMLSLERALRPLATSALVAC 157
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BLAST of mRNA_H-paniculata_contig4740.11777.1 vs. uniprot
Match: E1Z9U8_CHLVA (PROTEASOME_ALPHA_1 domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z9U8_CHLVA)

HSP 1 Score: 110 bits (275), Expect = 6.390e-24
Identity = 56/140 (40.00%), Postives = 81/140 (57.86%), Query Frame = 3 
Query:  153 VESGFDTNIGVFSPSGRLLQLDYVEGIVKRGNLCVGAECKDGVVLVTNKLMSADAAKLVGEEGGVRRIYRVDSHIGLLPAGLPADGRALAHKAMEYCRLHRREYGEPIPGRILAERLGEFLHAAIVRWGSRAYPNTVFIA 572
            + SG+D ++  FSP GR+ Q DY +  V      VG  CKDGVVL   KL+    +K++ E    RR + VD H G+  AG+ ADGR++  +AM     ++  YG+PIPG +LAERLG ++H   + W  R Y  +  +A
Sbjct:    4 IGSGYDNSVSTFSPDGRVFQTDYAQKAVDNSGTVVGIRCKDGVVLGAEKLI---ISKMLVENSN-RRTFPVDRHAGVATAGVAADGRSIVSRAMSEANQYKSFYGDPIPGHVLAERLGSYVHVFNLYWYVRPYGVSTLLA 139
[Close]
BLAST of mRNA_H-paniculata_contig4740.11777.1 vs. uniprot
Match: A8HP17_CHLRE (20S proteasome alpha subunit G n=8 Tax=Chlamydomonadales TaxID=3042 RepID=A8HP17_CHLRE)

HSP 1 Score: 110 bits (274), Expect = 8.980e-24
Identity = 54/140 (38.57%), Postives = 84/140 (60.00%), Query Frame = 3 
Query:  153 VESGFDTNIGVFSPSGRLLQLDYVEGIVKRGNLCVGAECKDGVVLVTNKLMSADAAKLVGEEGGVRRIYRVDSHIGLLPAGLPADGRALAHKAMEYCRLHRREYGEPIPGRILAERLGEFLHAAIVRWGSRAYPNTVFIA 572
            + +G+D +   +SP G++ Q +Y +  V   +  VG  CKDGVVL   KL+    +KL+  EG  RRI+ +D H+G+  AGL  DGR +A++A +    ++R YGEPIPG +L ER+G ++H   + W  R Y   + +A
Sbjct:    4 IGTGYDLSSTTYSPDGKIFQTEYAQKAVDNSSTVVGLRCKDGVVLACEKLV---LSKLL-VEGSNRRIHNIDRHVGVAVAGLAPDGRMVANRAWDEAASYKRVYGEPIPGHVLCERVGSYVHMFNLYWSLRPYGAALLLA 139
[Close]
BLAST of mRNA_H-paniculata_contig4740.11777.1 vs. uniprot
Match: A0A835WHU8_9CHLO (PROTEASOME_ALPHA_1 domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WHU8_9CHLO)

HSP 1 Score: 109 bits (273), Expect = 1.230e-23
Identity = 53/140 (37.86%), Postives = 84/140 (60.00%), Query Frame = 3 
Query:  153 VESGFDTNIGVFSPSGRLLQLDYVEGIVKRGNLCVGAECKDGVVLVTNKLMSADAAKLVGEEGGVRRIYRVDSHIGLLPAGLPADGRALAHKAMEYCRLHRREYGEPIPGRILAERLGEFLHAAIVRWGSRAYPNTVFIA 572
            + +G+D +   +SP G++ Q +Y +  V   +  +G  CKDGVVL   KL+    +KL+  EG  RRI+ +D H+G+  AGL  DGR +A++A +    ++R YGEPIPG +L ER+G ++H   + W  R Y   + +A
Sbjct:    4 IGTGYDLSSTTYSPDGKIFQTEYAQKAVDNSSTVIGLRCKDGVVLACEKLV---LSKLL-VEGSNRRIHNIDRHVGVAVAGLAPDGRMVANRAWDEAASYKRVYGEPIPGHVLCERVGSYVHMFNLYWSLRPYGAALLLA 139
[Close]
BLAST of mRNA_H-paniculata_contig4740.11777.1 vs. uniprot
Match: L1JB89_GUITC (Proteasome subunit alpha type n=2 Tax=Geminigeraceae TaxID=589343 RepID=L1JB89_GUITC)

HSP 1 Score: 107 bits (267), Expect = 8.410e-23
Identity = 56/140 (40.00%), Postives = 84/140 (60.00%), Query Frame = 3 
Query:  150 SVESGFDTNIGVFSPSGRLLQLDYVEGIVKRGNLCVGAECKDGVVLVTNKLMSADAAKLVGEEGGVRRIYRVDSHIGLLPAGLPADGRALAHKAMEYCRLHRREYGEPIPGRILAERLGEFLHAAIVRWGSRAYPNTVFI 569
            S+ +G+D     +SP GR+ Q++Y    V+     VG  CKDGVVL   KL+    +K++  EG  RR+  VD H+G+  +GL ADGR L ++A +    ++  YGEPIPG++LAER+  F+HA  + W  R +  +V I
Sbjct:    3 SIGTGYDLYTTSYSPDGRVFQVEYAGKAVESSGTAVGVRCKDGVVLGFEKLV---ISKML-VEGSSRRLLTVDDHVGMAVSGLLADGRQLVNRARDEAASYKEFYGEPIPGKVLAERVAGFVHAYTMYWSVRPFGASVLI 138
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BLAST of mRNA_H-paniculata_contig4740.11777.1 vs. uniprot
Match: A0A7S3UXS9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXS9_HETAK)

HSP 1 Score: 107 bits (266), Expect = 1.240e-21
Identity = 61/164 (37.20%), Postives = 92/164 (56.10%), Query Frame = 3 
Query:   87 FFALCVWASQQRQGVVEASSRSVESG--FDTNIGVFSPSGRLLQLDYVEGIVKRGNLCVGAECKDGVVLVTNKLMSADAAKLVGEEGGVRRIYRVDSHIGLLPAGLPADGRALAHKAMEYCRLHRREYGEPIPGRILAERLGEFLHAAIVRWGSRAYPNTVFIA 572
            F+  C++       VV     + +SG  +D +  +FSP+G+L+Q++Y +  V +G LCVGA CKDG+VL     +  D A ++ +E   + IYR++ +I +L AG P  G  L  +AM     ++R  GE +PG  LA+RL   LHAA   W  RA P  V +A
Sbjct:   39 FWFGCIFLLLFNDAVVNGIEVARDSGTAYDLSKNMFSPTGKLMQIEYAKKAVAKGPLCVGARCKDGIVLAFQVDLDLDFAIILDQESN-KNIYRIEDNIAILVAGAPG-GVELVQQAMSEATSYKRLTGESVPGAALAQRLALRLHAAAADWDRRAAPRAVLLA 200
[Close]
BLAST of mRNA_H-paniculata_contig4740.11777.1 vs. uniprot
Match: A0A2V3IZ88_9FLOR (Proteasome subunit alpha type n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZ88_9FLOR)

HSP 1 Score: 103 bits (257), Expect = 2.320e-21
Identity = 51/140 (36.43%), Postives = 79/140 (56.43%), Query Frame = 3 
Query:  150 SVESGFDTNIGVFSPSGRLLQLDYVEGIVKRGNLCVGAECKDGVVLVTNKLMSADAAKLVGEEGGVRRIYRVDSHIGLLPAGLPADGRALAHKAMEYCRLHRREYGEPIPGRILAERLGEFLHAAIVRWGSRAYPNTVFI 569
            S+ +G+D +  +FSP GR+ Q++Y    V+    C+G  CKDGV+L   K +    +K++   G +RR + VD H  L+  GL +DGR +  +A E C  +   YG PIPG ILA+RL  F+H   + W  R +   + +
Sbjct:    3 SIGTGYDLSSTIFSPDGRVFQIEYATKAVENSGTCMGIRCKDGVLLAVEKTI---ISKML-VPGSLRRAHIVDKHASLVVCGLISDGRVIVDRAREECENYLDFYGRPIPGAILADRLAHFVHLYTLHWSVRPFGCAILL 138
[Close]
BLAST of mRNA_H-paniculata_contig4740.11777.1 vs. uniprot
Match: A0A2I0PVC9_9EURY (Proteasome subunit alpha n=1 Tax=Methanomicrobiales archaeon HGW-Methanomicrobiales-1 TaxID=2013817 RepID=A0A2I0PVC9_9EURY)

HSP 1 Score: 100 bits (250), Expect = 1.420e-20
Identity = 54/139 (38.85%), Postives = 82/139 (58.99%), Query Frame = 3 
Query:  156 ESGFDTNIGVFSPSGRLLQLDYVEGIVKRGNLCVGAECKDGVVLVTNKLMSADAAKLVGEEGGVRRIYRVDSHIGLLPAGLPADGRALAHKAMEYCRLHRREYGEPIPGRILAERLGEFLHAAIVRWGSRAYPNTVFIA 572
            ++G+D  I VFSP GRL Q++Y    VKRG   VG + KDGVVL+ +K +S+   KL+ E   + +I+++D HIG+  +GL  D RAL  +A   C+++R  Y EPI    L+++L + +       G R Y   + IA
Sbjct:    6 QTGYDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKAKDGVVLIVDKRVSS---KLL-EASSIEKIFKIDEHIGVASSGLVGDARALVDRARVECQINRVSYDEPIDVEALSKKLCDHMQTLTQYGGIRPYGTALLIA 140
[Close]
BLAST of mRNA_H-paniculata_contig4740.11777.1 vs. uniprot
Match: U6G9W4_EIMAC (Proteasome subunit alpha type n=1 Tax=Eimeria acervulina TaxID=5801 RepID=U6G9W4_EIMAC)

HSP 1 Score: 100 bits (249), Expect = 2.880e-20
Identity = 54/137 (39.42%), Postives = 74/137 (54.01%), Query Frame = 3 
Query:  159 SGFDTNIGVFSPSGRLLQLDYVEGIVKRGNLCVGAECKDGVVLVTNKLMSADAAKLVGEEGGVRRIYRVDSHIGLLPAGLPADGRALAHKAMEYCRLHRREYGEPIPGRILAERLGEFLHAAIVRWGSRAYPNTVFI 569
            SG+D ++  FSP GR+ Q++Y    V    LCV A CK GV     K        ++  +G  RRIY V   IGL+ AGL ADGR L H+A E  + + + YG  IP  +LAER+  F+HA  + W  R +  T  +
Sbjct:    6 SGYDLSVSTFSPDGRVFQVEYAAKAVDNAALCVAAACKGGVAFAVEK----PKGSVMLAQGSNRRIYPVTKDIGLVVAGLSADGRQLWHRAREEAQSYLKHYGVSIPLGVLAERIALFMHAFTLYWHVRPFGATCIL 138
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4740.11777.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGM2_ECTSI1.100e-9043.6720S proteasome alpha subunit G n=2 Tax=Ectocarpus ... [more]
A0A835ZBF0_9STRA1.460e-2643.84Nucleophile aminohydrolase (Fragment) n=1 Tax=Trib... [more]
E1Z9U8_CHLVA6.390e-2440.00PROTEASOME_ALPHA_1 domain-containing protein n=1 T... [more]
A8HP17_CHLRE8.980e-2438.5720S proteasome alpha subunit G n=8 Tax=Chlamydomon... [more]
A0A835WHU8_9CHLO1.230e-2337.86PROTEASOME_ALPHA_1 domain-containing protein n=1 T... [more]
L1JB89_GUITC8.410e-2340.00Proteasome subunit alpha type n=2 Tax=Geminigerace... [more]
A0A7S3UXS9_HETAK1.240e-2137.20Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A2V3IZ88_9FLOR2.320e-2136.43Proteasome subunit alpha type n=1 Tax=Gracilariops... [more]
A0A2I0PVC9_9EURY1.420e-2038.85Proteasome subunit alpha n=1 Tax=Methanomicrobiale... [more]
U6G9W4_EIMAC2.880e-2039.42Proteasome subunit alpha type n=1 Tax=Eimeria acer... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4740contigH-paniculata_contig4740:3949..10073 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score301.2
Seed ortholog evalue8.4e-79
Seed eggNOG ortholog2880.D8LGM2
Preferred namePAG1
KEGG koko:K02727
KEGG Pathwayko03050,map03050
KEGG ModuleM00337,M00340
Hectar predicted targeting categorysignal peptide
GOsGO:0000502,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005839,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009266,GO:0009409,GO:0009628,GO:0009987,GO:0010035,GO:0010038,GO:0010498,GO:0010499,GO:0012505,GO:0016020,GO:0019538,GO:0019773,GO:0019941,GO:0030163,GO:0031090,GO:0031597,GO:0032991,GO:0034515,GO:0042175,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046686,GO:0048046,GO:0050896,GO:0051603,GO:0071704,GO:0097159,GO:0098588,GO:0098805,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1905368,GO:1905369
EggNOG free text desc.The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH
EggNOG OGsCOG0638@1,KOG0184@2759
Ec32 ortholog descriptionNucleophile aminohydrolases, N-terminal
Ec32 orthologEc-10_002750.1
EC3.4.25.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03051
Exons6
Model size1481
Cds size1416
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930408.6262982-CDS-H-paniculata_contig4740:3948..47091622930408.6262982-CDS-H-paniculata_contig4740:3948..4709Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4740 3949..4709 -
1691481278.5076404-CDS-H-paniculata_contig4740:3948..47091691481278.5076404-CDS-H-paniculata_contig4740:3948..4709Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4740 3949..4709 -
1622930408.6727617-CDS-H-paniculata_contig4740:4757..50321622930408.6727617-CDS-H-paniculata_contig4740:4757..5032Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4740 4758..5032 -
1691481278.5206478-CDS-H-paniculata_contig4740:4757..50321691481278.5206478-CDS-H-paniculata_contig4740:4757..5032Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4740 4758..5032 -
1622930408.6904154-CDS-H-paniculata_contig4740:5715..57821622930408.6904154-CDS-H-paniculata_contig4740:5715..5782Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4740 5716..5782 -
1691481278.5293705-CDS-H-paniculata_contig4740:5715..57821691481278.5293705-CDS-H-paniculata_contig4740:5715..5782Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4740 5716..5782 -
1622930408.7071667-CDS-H-paniculata_contig4740:6805..69021622930408.7071667-CDS-H-paniculata_contig4740:6805..6902Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4740 6806..6902 -
1691481278.538653-CDS-H-paniculata_contig4740:6805..69021691481278.538653-CDS-H-paniculata_contig4740:6805..6902Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4740 6806..6902 -
1622930408.7221107-CDS-H-paniculata_contig4740:7782..78361622930408.7221107-CDS-H-paniculata_contig4740:7782..7836Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4740 7783..7836 -
1691481278.5482662-CDS-H-paniculata_contig4740:7782..78361691481278.5482662-CDS-H-paniculata_contig4740:7782..7836Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4740 7783..7836 -
1622930408.7386894-CDS-H-paniculata_contig4740:9846..100081622930408.7386894-CDS-H-paniculata_contig4740:9846..10008Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4740 9847..10008 -
1691481278.5586648-CDS-H-paniculata_contig4740:9846..100081691481278.5586648-CDS-H-paniculata_contig4740:9846..10008Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4740 9847..10008 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930408.774215-UTR-H-paniculata_contig4740:10008..100731622930408.774215-UTR-H-paniculata_contig4740:10008..10073Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4740 10009..10073 -
1691481278.5677161-UTR-H-paniculata_contig4740:10008..100731691481278.5677161-UTR-H-paniculata_contig4740:10008..10073Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4740 10009..10073 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4740.11777.1prot_H-paniculata_contig4740.11777.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4740 3949..10008 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4740.11777.1

>prot_H-paniculata_contig4740.11777.1 ID=prot_H-paniculata_contig4740.11777.1|Name=mRNA_H-paniculata_contig4740.11777.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=472bp
MRTRPVAFFALCVWASQQRQGVVEASSRSVESGFDTNIGVFSPSGRLLQL
DYVEGIVKRGNLCVGAECKDGVVLVTNKLMSADAAKLVGEEGGVRRIYRV
DSHIGLLPAGLPADGRALAHKAMEYCRLHRREYGEPIPGRILAERLGEFL
HAAIVRWGSRAYPNTVFIACCEEQEQREEEEEEVMEEVGKCQGTEKDDVM
LEEQGNAGGDDGDVSAATVKDEANFASTAKGEQETVASGTEGAHEQRERV
VAEPTAVGGVVDRRNERFRLYVVEPSGVARRYRAACTGKGSANTYQWLHR
RSSPVIVDKDSTTKKVPNTTITTATAAEEGAWVGHKGGRGRVGRRFQHGA
QTDDDDGYEDENEDRGSDSDEMERQRKQKDDRGGKEGDEGQEEGNSGAKW
QRRPQRTGCRLLSEMTCAEASKALVRAARLGFTSKGGGGVVGVPEVAWIT
SAAGDAAKFVHDKSLPDEALS*
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mRNA from alignment at H-paniculata_contig4740:3949..10073-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4740.11777.1 ID=mRNA_H-paniculata_contig4740.11777.1|Name=mRNA_H-paniculata_contig4740.11777.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6125bp|location=Sequence derived from alignment at H-paniculata_contig4740:3949..10073- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGCCAGTGTGATTAAGTACAATACAGTACCACACACCACACAGTAGACC
TTGCGTTTCTAGACAATGAGGACGCGGCCAGTAGCTTTTTTCGCCTTGTG
CGTATGGGCAAGCCAGCAGCGGCAGGGTGTTGTCGAAGCGTCTTCAAGGT
CGGTCGAGAGCGGTTTTGATACTAACATCGGTGTATTCAGTCCATCCGGG
CGCCTGCTTCAGCTCGATTATGTCGAGGTAGGTCTGGCTATTTCACTCGT
GGTGGTGTGCTGTGACCTGGAGACAGATGAGACCACGTACGGGAGAGTTG
AACTGCTCTGTCGTGGGTATCTCTAATACTCGCATTAATCATATTCGCCA
GTAAGTGGAATGAAATGCGGACATGGATCTGTGAGGTAACAAACTCACTG
TATTCAGGTTTCGATGGATTCGGATATTTGCTAACTCTCGTTGTCAACAC
CTCAAACACGTGACAAACACAGGGCAATGTAGTATTTAGTGTCTCCGACG
GTTACATTTTATAGGAATTCACACCCTCATCTAGGGACGAGTGAGTGGCG
GTTAAGTTTGAAACCGAGAATAGCCATTGACTATTGGTGCTCGTTCGAAA
GGACGTTCTGCAGCTGTCCTCACTGAGTGCTACTGCCGTGCGTTGCAAAG
TCTTTTCACTGAGAGCGCTGCTGTTCTTTTGTACAAATTATGTTGCTGCG
GATGTACTATTGCACATTCAATATTGAACGATGTGTTAACGATTTTTCGA
TGTATCTCACCTGGTACTGAGTTTGGGTGGGGGCAGAGGTTGGGCCGCAT
GCCCTCCCCCCTACGACAATAGATCCCAAAGACACCTCTGCCCCTCTGTT
TATTTCCTTGCTTCACTCAATTTTTTGTTTAAATAAGTGACATAAACACC
ATCCAGTTAGCATTTGATAATACACCAGACAGCTCTAACTTCTGCCGCGG
GAGTCATGACGTGATTTTTCGAACTGCTTAGTAGGGCGCAGCAACCTTAC
AGTGCCATACTGCTGCTAACCAGATACACATTAGGCGCCTTTTCTTTTCT
CCTAGTTTTTTGCGGCTTAATGCATGGCTATTTAACTCAGGGACATGTTT
TCTCACATGGAAAAAGAACTGGTAAAATAGACATATCTACATCGCTTCCA
CCACTAAAAAATACATAACCACATGACTGCAGGTCTTTGGGTGGCGAGCA
AACCCGAGTGACGTAAAAAGATAATGCCCGTAACTAAAAAAAAATAAAGC
GATTCTTCGCTGCAGATATCATATCCCACATGCTCCCATCTATCGTCACT
AGCCATTGCCTTGAACGTAAATTTATTGCGATCAAGCTGCCCAAAAAACA
AGGATCGGGGCAACACTTTAAATGCCACCTATTGACTCCCGGAAAATGAC
CAACTTGGGGTGAAATGCGTATGTTGCCTATTACCTCATGACCTCAGTAT
TCCATTTAAAAGTAAATACGTCATTTCCACTTATCATCTCGTACTCTCCA
TTTGCGACTCCACAAATAAGTATGAAATTTCGGGTATTGTGTGTAAAAAG
GTGGAGCATCCGCGACGTGTGACAGGCTTGATTGACCAGCTGAGAATATC
GCTACTGCGAAGTTATATGTATCAATAACTTTTCACATCCAGCGAATCAG
ACATTAGGTCATTTTTGCTGTGTTTTTTCCATCTCGTTTAGTATACATAC
TGTTGCCATAAACAACAGCTGTTGTTTGTTGATAAGCGATTTTCTCCCTA
TCAACACACGGTCTCCGATATCTTGGCCTCGGTCTTCTCCTGATGCCACC
GAAGCCTCTGATGGGTGATGTTGGTTTTCTTTCGTAGATTCGGAGAAGGA
GAGTTCGAACCAGATACATAGTAGACTTCTTGAGATCCTGGTGTACAAAG
GAAATCCTTCATCTACTCTTGTTCGGGTTGGCTAGAAGAAGGGAGTGATG
GAGATCCAGCACGAGCTTTTGCGTGAGAGATAAGAGAGAGTTTTCCCTCA
GTAAGGTTGCCACTGTTCGCCTCGCGTTCTAAATGACCGAATCATATCCG
TAGCTTTATGTTGTACATGTGTGACGTAAGATCTACGACGGTATGAAAAA
ACGGTCTCCACGTGTTTATTTACCTCTCTAAATGTGAAGCGCAATAACGC
TCTTCTTTCCATTATTCATACCTTACCTACGTACTATCGGTCTTTCTTTA
TTCCCGTACACCTCGGTCAACGGTTGACTGCACACAGGGCATCGTGAAGA
GAGGTAACCTGTGTGTCGGAGCTGAGTGCAAGGACGGTGTGGTGAGTGAC
CACGCGGACACAACGTTGTACTGGGTGTAGTAGTAATACATAAAATTGAA
ATGAAAAATTGCTGCGTCGTGCATGCTGACGGGTAGAATAAAACGTTGGC
AGTGAATTGTGGTGAATCGCTTGAAGAAGTTGTTGAAAAAAGCAAGACTG
AGACCTTCATGTACCACAGGAATACTAGTATGATGCACATGTGCATGGGT
AGCGCAAAACAGTCAAGAGCCAAGAAGAAATAATGACAAAAGCTGACGAC
AAAGGCGAGTGCTACCCTGGTGTTCCCAGGTCATCGTCGATAGGCATCCA
AGAAAAATTGGTTGTGTGTGTATGTGTGTGTATGTGTGTGTGTCACTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCACACACTCTCTC
TGCATCATGACCGTAATTCAGTAGCCCCATCGAAAGACTCCCTCTTGCAC
AAAGAAAGCTTCGTATGTTTTTTTTTCCGTCGACCTTACGGAAGCGGACC
CGCGAAAGATGTCAATCGTCACCCTATAGAGAGCATCATCATACGATACT
TCTCGGAGCAAAAATCACGAAATGGTAGCTCGCAGCTCGCTGCTGCATTA
TCGGTTGCCTTGCCGACTCACGGCTCCCAGCCAGGTTTACTGTACCGCTC
ACCATGCCGTGAAAGTAGGTTACAGAGGGATTAATTTGATAGCAGTTTGG
AATTTTCCAGCGAATAGATAGGTGGTTGTATTTGCAACATTGAGAGACGG
TTCTTCAAGGTAGCGTAAGCTTTTCCTGTTCCCCCCCTTGTGTCTAATAT
TGAACATCCCACCTACATACTGAACCACTCAACTCGGTCGACTGTCTGGT
GTGTCCTCTTTTGCTGTGCAGGTCTTGGTCACTAACAAGCTCATGTCTGC
AGATGCGGCCAAGTTGGTTGGGGAAGAGGGCGGTGTCCGACGTATTTATC
GAGTTGATTCTCACATCGGTAAGAGCCAGAGCGGCGGACAGGGGGGAAAG
ATATACATACGCCTCGGATGGGGGGAGGGGGTGAGGAAAGAAAGGTTGCT
CTGCGGTTGTCCAAACGTCATTATGGAAGAGAGCGACCCTTCATCGTAAC
GAATGGATGCTTTTTCAAAAGTTCTCAGCTAGCGACCGAATTTGGTCTAC
CTTCTCGCCCTTACTTCATTCACATACTCAATATATACATTTCACGATGT
CGTATTTTTTTTATCCATATTGCGGGCGCGCGTGTACTCGGACACACGAA
AGCATGGTCAAGGGAGGGAGGGCATGTATATGGTCACGTGTTGTTCCGTT
TAACCCAGCAAACACGAAGCCCGAGTGCCGAATAGTAGTCAAGTGTGCCA
GGTGTACGAGCGGTCGATGGTCGTTGGATTTTGCTCGATTGAAACGATGA
TTGGGGGATCCGGTGAATCACAAGGGCCGTTTTCGGGTTTGTTCTCTCTC
GGGCAAATAAAGAATGTTTTCGTTCATCAATACAAGCGGATTGCAAACAA
GCACAAACTGTGCAATCATAAACATGATGAGAGCTTACTACCCCGGCTTG
GTATATTTTCGTTGATAAGTGTACACAACTGAGAATTGAGGTCAGCTGTA
TAATCTCAGCATGGGGTACGATTCAATTAGATTATGACTTTTATCGAGCT
ACTAACGTAAGCCCCCCCCTCCCCCCCCTGGGGTATGCATGAAATGACCG
GTATATACCAGGCGTTTTTACCGTCTCTTCTTAGCTGCATGAGGGTAATA
ATCCCCCGGCAGGGAAAATCTATTACAGCTTCCTTCTCCTGTCGCAAATT
TGTTTACCCAAAGACACGTGCTAATCCCCGTCGACCGTTGTGTGTGTGTA
CACTGATCGTTCGTTGAAGTGGGGATTTAGAACCGCCGGAGGGTTTGCTT
CTAGCGATGCCCGCTGGCGTTTTGCTTTTTTCTCTCGGTTGACGCTCTCT
CGTGTTTTCTCGCATGTTCCTGTTTGTGTGAGAGAAACCAGGCCTATTGC
CTGCAGGATTACCGGCCGACGGGAGGGCCCTGGCGCATAAGGCGATGGAG
TACTGCAGGTACGCGCGCGAACGAGGCGATGACACCCTGGCTTTGCATTG
CTGCGCAGGATTATATTTTCATGGACCATGGTCCACGGAGATGAAACAGT
TCCTCCAAACACGAATAGTGTCAGAGGAAAAGTGCGGCGTTTGTCCTCAC
ACCGTGCAATAATAGTTATACAAAGATTGCGTGTTGAGTTTGAGAAATCA
CGCTGCAAACGCGATGGTTCCCCCCCCCCCGAGCGCGCTACGTAGGAAAG
AGAGATGGGTCATCGGAAATCGCTCTGATACGAACAAAACTCCGTCCTCC
CGAGGACGCATGGTCAATTGTCTAAGAAGTACGCCCATGCAAAACATGAG
TACACCCCTAGCGTGCGCGTGCGCCGCCGTCGCTGCCGCCGCCGCGATGA
CGATTCGGTCGTTCTTGGCGTGTATCGGTGCCCTCTTTAGCGTTCTTGAG
GCTCATTATTACCCTGGCCCAACCATCGCATCTCTCTTTCTCTCTCTCTC
GCTGATCCGTATGTATATATGTACCATCAAAACCGAAAAATTATCCCATG
CTTCTGTTACCTCAGTGGCACCACTTCCCCCCCAACCTCCCTGTCTCTCA
TCCCCCGTCCCTTCCTCTACTTTACTGATAAGTGTATACGCATCCTTGAT
TTCATCTCCCCTCCCTCTCTCCCTGAAAAAAAAAAAAAAAGATTGCATCG
GAGGGAGTACGGAGAGCCGATCCCCGGGCGCATACTCGCCGAGCGACTGG
GAGAGTTCCTCCACGCTGCCATCGTTCGGTGGGGATCTCGTGCATATCCC
AACACTGTTTTCATTGCTTGCTGCGAGGAGCAGGAGCAGAGAGAGGAGGA
GGAGGAGGAGGTGATGGAGGAGGTGGGAAAATGTCAAGGTACCGAGAAGG
ATGATGTAATGCTGGAGGAACAGGGAAACGCGGGCGGTGACGACGGCGAT
GTTAGTGCTGCTACTGGTGATGATAATGACGATGATGGCTGTAGTAGAGG
TCAAGATGATAGAGTCAAGGATGAAGCGAATTTCGCCAGTACTGCAAAGG
GGGAGCAGGAGACCGTCGCGAGTGGGACAGAGGGAGCCCACGAACAGCGG
GAGCGTGTTGTTGCGGAACCTACCGCCGTCGGTGGCGTGGTGGACAGGAG
GAACGAACGGTTTCGCCTTTATGTGGTGGAGCCTAGCGGGGTGGCGCGGC
GGTACCGAGCAGCGTGCACAGGAAAGGGGAGCGCGAACACTTACCAGTGG
CTGCACCGTCGATCATCTCCCGTGATTGTCGATAAAGATAGTACGACAAA
AAAGGTGCCGAATACCACTATTACTACTGCTACTGCTGCAGAGGAAGGGG
CATGGGTAGGGCATAAAGGAGGAAGAGGAAGAGTAGGAAGGCGTTTTCAA
CATGGGGCCCAGACCGACGACGACGACGGATATGAGGACGAGAATGAAGA
CAGGGGCTCGGATAGCGATGAGATGGAAAGGCAGCGAAAGCAAAAGGATG
ATAGGGGGGGGAAGGAAGGGGACGAGGGGCAGGAGGAGGGGAATAGTGGG
GCAAAATGGCAGCGGCGGCCGCAGCGGACGGGCTGCCGATTATTATCGGA
GATGACGTGTGCCGAGGCATCGAAAGCCTTGGTGCGGGCCGCGAGACTTG
GTTTCACCAGTAAGGGAGGAGGGGGGGTGGTGGGTGTCCCAGAGGTTGCT
TGGATCACTTCGGCCGCTGGGGATGCTGCTAAGTTTGTCCATGATAAGTC
ATTGCCGGATGAGGCGCTATCGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig4740:3949..10073-

>mRNA_H-paniculata_contig4740.11777.1 ID=mRNA_H-paniculata_contig4740.11777.1|Name=mRNA_H-paniculata_contig4740.11777.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2832bp|location=Sequence derived from alignment at H-paniculata_contig4740:3949..10073- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGACGCGGCCAGTAGCTTTTTTCGCCTTGTGCGTATGGGCAAGCCA
GCAGCGGCAGGGTGTTGTCGAAGCGTCTTCAAGGTCGGTCGAGAGCGGTT
TTGATACTAACATCGGTGTATTCAGTCCATCCGGGCGCCTGCTTCAGCTC
GATTATGTCGAGATGAGGACGCGGCCAGTAGCTTTTTTCGCCTTGTGCGT
ATGGGCAAGCCAGCAGCGGCAGGGTGTTGTCGAAGCGTCTTCAAGGTCGG
TCGAGAGCGGTTTTGATACTAACATCGGTGTATTCAGTCCATCCGGGCGC
CTGCTTCAGCTCGATTATGTCGAGGGCATCGTGAAGAGAGGTAACCTGTG
TGTCGGAGCTGAGTGCAAGGACGGTGTGGGCATCGTGAAGAGAGGTAACC
TGTGTGTCGGAGCTGAGTGCAAGGACGGTGTGGTCTTGGTCACTAACAAG
CTCATGTCTGCAGATGCGGCCAAGTTGGTTGGGGAAGAGGGCGGTGTCCG
ACGTATTTATCGAGTTGATTCTCACATCGGTCTTGGTCACTAACAAGCTC
ATGTCTGCAGATGCGGCCAAGTTGGTTGGGGAAGAGGGCGGTGTCCGACG
TATTTATCGAGTTGATTCTCACATCGGCCTATTGCCTGCAGGATTACCGG
CCGACGGGAGGGCCCTGGCGCATAAGGCGATGGAGTACTGCAGGCCTATT
GCCTGCAGGATTACCGGCCGACGGGAGGGCCCTGGCGCATAAGGCGATGG
AGTACTGCAGATTGCATCGGAGGGAGTACGGAGAGCCGATCCCCGGGCGC
ATACTCGCCGAGCGACTGGGAGAGTTCCTCCACGCTGCCATCGTTCGGTG
GGGATCTCGTGCATATCCCAACACTGTTTTCATTGCTTGCTGCGAGGAGC
AGGAGCAGAGAGAGGAGGAGGAGGAGGAGGTGATGGAGGAGGTGGGAAAA
TGTCAAGGTACCGAGAAGGATGATGTAATGCTGGAGGAACAGGGAAACGC
GGGCGGTGACGACGGCGATGTTAGTGCTGCTACTGATTGCATCGGAGGGA
GTACGGAGAGCCGATCCCCGGGCGCATACTCGCCGAGCGACTGGGAGAGT
TCCTCCACGCTGCCATCGTTCGGTGGGGATCTCGTGCATATCCCAACACT
GTTTTCATTGCTTGCTGCGAGGAGCAGGAGCAGAGAGAGGAGGAGGAGGA
GGAGGTGATGGAGGAGGTGGGAAAATGTCAAGGTACCGAGAAGGATGATG
TAATGCTGGAGGAACAGGGAAACGCGGGCGGTGACGACGGCGATGTTAGT
GCTGCTACTGTCAAGGATGAAGCGAATTTCGCCAGTACTGCAAAGGGGGA
GCAGGAGACCGTCGCGAGTGGGACAGAGGGAGCCCACGAACAGCGGGAGC
GTGTTGTTGCGGAACCTACCGCCGTCGGTGGCGTGGTGGACAGGAGGAAC
GAACGGTTTCGCCTTTATGTGGTGGAGCCTAGCGGGGTGGCGCGGCGGTA
CCGAGCAGCGTGCACAGGAAAGGGGAGCGCGAACACTTACCAGTGGCTGC
ACCGTCGATCATCTCCCGTGATTGTCGATAAAGATAGTACGACAAAAAAG
GTGCCGAATACCACTATTACTACTGCTACTGCTGCAGAGGAAGGGGCATG
GGTAGGGCATAAAGGAGGAAGAGGAAGAGTAGGAAGGCGTTTTCAACATG
GGGCCCAGACCGACGACGACGACGGATATGAGGACGAGAATGAAGACAGG
GGCTCGGATAGCGATGAGATGGAAAGGCAGCGAAAGCAAAAGGATGATAG
GGGGGGGAAGGAAGGGGACGAGGGGCAGGAGGAGGGGAATAGTGGGGCAA
AATGGCAGCGGCGGCCGCAGCGGACGGGCTGCCGATTATTATCGGAGATG
ACGTGTGCCGAGGCATCGAAAGCCTTGGTGCGGGCCGCGAGACTTGGTTT
CACCAGTAAGGGAGGAGGGGGGGTGGTGGGTGTCCCAGAGGTTGCTTGGA
TCACTTCGGCCGCTGGGGATGCTGCTAAGTTTGTCCATGATAAGTCATTG
CCGGATGAGGCGCTATCGTAATCAAGGATGAAGCGAATTTCGCCAGTACT
GCAAAGGGGGAGCAGGAGACCGTCGCGAGTGGGACAGAGGGAGCCCACGA
ACAGCGGGAGCGTGTTGTTGCGGAACCTACCGCCGTCGGTGGCGTGGTGG
ACAGGAGGAACGAACGGTTTCGCCTTTATGTGGTGGAGCCTAGCGGGGTG
GCGCGGCGGTACCGAGCAGCGTGCACAGGAAAGGGGAGCGCGAACACTTA
CCAGTGGCTGCACCGTCGATCATCTCCCGTGATTGTCGATAAAGATAGTA
CGACAAAAAAGGTGCCGAATACCACTATTACTACTGCTACTGCTGCAGAG
GAAGGGGCATGGGTAGGGCATAAAGGAGGAAGAGGAAGAGTAGGAAGGCG
TTTTCAACATGGGGCCCAGACCGACGACGACGACGGATATGAGGACGAGA
ATGAAGACAGGGGCTCGGATAGCGATGAGATGGAAAGGCAGCGAAAGCAA
AAGGATGATAGGGGGGGGAAGGAAGGGGACGAGGGGCAGGAGGAGGGGAA
TAGTGGGGCAAAATGGCAGCGGCGGCCGCAGCGGACGGGCTGCCGATTAT
TATCGGAGATGACGTGTGCCGAGGCATCGAAAGCCTTGGTGCGGGCCGCG
AGACTTGGTTTCACCAGTAAGGGAGGAGGGGGGGTGGTGGGTGTCCCAGA
GGTTGCTTGGATCACTTCGGCCGCTGGGGATGCTGCTAAGTTTGTCCATG
ATAAGTCATTGCCGGATGAGGCGCTATCGTAA
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