mRNA_H-paniculata_contig474.11775.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig474.11775.1
Unique NamemRNA_H-paniculata_contig474.11775.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig474.11775.1 vs. uniprot
Match: A0A6H5L7H8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7H8_9PHAE)

HSP 1 Score: 306 bits (784), Expect = 4.560e-90
Identity = 277/576 (48.09%), Postives = 324/576 (56.25%), Query Frame = 1 
Query:  232 MANLSYRQPKMPLANPPRWLVSEIFGHESYVTSVTFFGENYDRIVSGSYDEVAKLWDLKTKRCLRKFIGHTDGVTVVMQGPDGRVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAGGNNVGEAELVSEIMAVASAATAPAAPPSRWPAKPKRSSASSSGSIASPSVAPLGKLKDGENKPAPSGPRF-RIFACGGVHIPTPARPMLRSVDVDPTATST---------AVAVDNSSHFDMCTAY--KDEPDGEE----------------------------GVVSSVAVSAAGVSGSGTLIAGCYDKAIRVLRNVFPAVLTVAEVVDADCLQSAGAEACSEGEDGGDGVASKAELPHASMEILGRHADGVRAVAISANGRWGVSGSRDGHIKVWEIASEPHPPGAALQ------TAEADFEAHHGVIFSLCMSPDARILVSGGSDRCIRVWDLSLVVNSRRLAVNRARALWSDGRIRRARAKRSSSSSANGMGGSADG-----------------SGGGALKAFNSSREQRQHIFEGLFALPEIIYAKVLMY 1770
            M+NLSY QPK+ L  P R L   I+ H SYV+SV FFG   DR+++GSYDE AKLWDLKT   L+KF GHTDG+T VM GPDGR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   G+  GE EL SEI AVA          S  P  P  SS                        PAP  P   RI ACGG  +P PA+PMLR VDV   A +          A  V   +  D+C A   + E +GE                             G+++ VA+SAAG  G G L+ G YDK +RVL NV              C       + S               P  +M +LGRH +GVRAVAISA+GRW V+G R G +KVWE+  E  PPGA  +       AEA+FEAH G ++SLCMSPDAR +VSGGSD+  RVWDLSL+V +RR+++NR RALW+  R+RRAR KRS                               +G   LKAF +SREQRQ I E LFALP+IIYAKVLMY
Sbjct:   51 MSNLSYHQPKVEL-KPTRLLARTIYAHHSYVSSVAFFGSQCDRLLTGSYDETAKLWDLKTGLALQKFQGHTDGITFVMPGPDGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAGHLHGETELDSEITAVAG---------SDGPPSPSSSS------------------------PAPVVPSVVRILACGGTFLPAPAKPMLRRVDVRTAAAAARADQAGGEEADVVSRPARSDLCAAAAGRSERNGENXXXXXXXXXXXXXXXDARGGGEAAVKEAGIMTCVAISAAGARGRGILVTGSYDKGVRVLHNVL-------------CPDRENPPSSS--------XXXXXXXPPVTMRMLGRHEEGVRAVAISADGRWAVTGDRKGIVKVWEVPREA-PPGADREPLSSDGAAEAEFEAHKGYVYSLCMSPDARTVVSGGSDKAFRVWDLSLIVYARRMSLNRLRALWTADRLRRARLKRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAGAQVLKAFGNSREQRQQILESLFALPDIIYAKVLMY 570
[Close]
BLAST of mRNA_H-paniculata_contig474.11775.1 vs. uniprot
Match: D8LF89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF89_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 3.770e-32
Identity = 102/270 (37.78%), Postives = 128/270 (47.41%), Query Frame = 1 
Query:  835 NKPAPSGPRF-RIFACGGVHIPTPARPMLRSVDVDPTATSTAVA----------VDNSSHFDMCTAY--KDEPDGEE-------------------------GVVSSVAVSAAGVSGSGTLIAGCYDKAIRVLRNVFPAVLTVAEVVDADCLQSAGAEACSEGED--GGDGVASKAELPHASMEILGRHADGVRAVAISANGRWGVSGSRDGHIKVWEIASEPHPPGAALQ------TAEADFEAHHGVIFSLCMSPDARILVSGGSDRC 1506
            + PAP  P   RI ACGG  +P PA+PMLR VDV   A + A A          V      D+C A   + E DGE                          G+++ VA+SAAG  G G L+ G YDK +RVL NV                       C + E+                +M +LGRH +GVRAVAISA+GRW V+G R G +KVWE+  E  PPGA  +       AEA+FEAH G ++SLCMSPDAR L    + RC
Sbjct:   21 SSPAPVVPPVVRILACGGTFLPAPAKPMLRRVDVRTAAPAGAGADQAGGEEADVVSRPVRSDLCAAAAGRSERDGENXXXXXXXXXXXXXXRGGGEAAVKEAGIMTCVAISAAGARGRGILVTGSYDKGVRVLHNVL----------------------CPDRENPPXXXXXXXXXXXXXVTMRMLGRHEEGVRAVAISADGRWAVTGDRKGLVKVWEVPRET-PPGADREPSSPDGAAEAEFEAHKGYVYSLCMSPDARTLAR--TSRC 265
[Close]
BLAST of mRNA_H-paniculata_contig474.11775.1 vs. uniprot
Match: D8LF88_ECTSI (WD repeat-containing protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF88_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 5.110e-24
Identity = 53/84 (63.10%), Postives = 62/84 (73.81%), Query Frame = 1 
Query:  232 MANLSYRQPKMPLANPPRWLVSEIFGHESYVTSVTFFGENYDRIVSGSYDEVAKLWDLKTKRCLRKFIGHTDGVTVVMQGPDGR 483
            M+NLSY QPK+ L  P R L   I+ H SYV+SV FFG   DR+++GSYDE AKLWDLKT   L+KF GHTDG+T VM GPDGR
Sbjct:    1 MSNLSYHQPKVEL-KPTRLLARTIYAHHSYVSSVAFFGSQCDRLLTGSYDETAKLWDLKTGLALQKFQGHTDGITFVMPGPDGR 83
[Close]
BLAST of mRNA_H-paniculata_contig474.11775.1 vs. uniprot
Match: A0A3Q3E665_HIPCM (WD repeat domain 3 n=3 Tax=Hippocampus comes TaxID=109280 RepID=A0A3Q3E665_HIPCM)

HSP 1 Score: 64.3 bits (155), Expect = 9.810e-7
Identity = 33/89 (37.08%), Postives = 57/89 (64.04%), Query Frame = 1 
Query: 1330 VSGSRDGHIKVWEIASEPHPPGAALQTAEADFEAHHGVIFSLCMSPDARILVSGGSDRCIRVWDLSLVVNS----RRLAVNRARALWSD 1584
            + GS++G ++++E+AS     G+ L+T     +AHHG ++SLC++PD R +VSGG+D+ +++WD  LV +     +RL +   R L  D
Sbjct:  461 ILGSKNGKLQIFELAS-----GSLLET----LDAHHGALWSLCLAPDQRGIVSGGADKTVKLWDFELVKDEASGHKRLTLKHRRTLQLD 540
[Close]
BLAST of mRNA_H-paniculata_contig474.11775.1 vs. uniprot
Match: A0A2D0R5D1_ICTPU (WD repeat-containing protein 3 n=7 Tax=Siluroidei TaxID=1489793 RepID=A0A2D0R5D1_ICTPU)

HSP 1 Score: 61.6 bits (148), Expect = 6.830e-6
Identity = 32/90 (35.56%), Postives = 56/90 (62.22%), Query Frame = 1 
Query: 1330 VSGSRDGHIKVWEIASEPHPPGAALQTAEADFEAHHGVIFSLCMSPDARILVSGGSDRCIRVWDLSLVVNS-----RRLAVNRARALWSD 1584
            + G++ G I+++++AS     G+ L+TAEA    H G ++S+C+SPD R +V+GG+D+ ++ WD  L+ ++     +RL V   R L  D
Sbjct:  466 IVGTKSGKIQIFDLAS-----GSLLETAEA----HEGALWSICLSPDQRGIVTGGADKMVKFWDFELIKDNESGANKRLTVKHTRTLQLD 546
[Close]
BLAST of mRNA_H-paniculata_contig474.11775.1 vs. uniprot
Match: A0A6P8GI26_CLUHA (WD repeat-containing protein 3 n=3 Tax=Clupeidae TaxID=55118 RepID=A0A6P8GI26_CLUHA)

HSP 1 Score: 61.6 bits (148), Expect = 6.830e-6
Identity = 32/91 (35.16%), Postives = 56/91 (61.54%), Query Frame = 1 
Query: 1330 VSGSRDGHIKVWEIASEPHPPGAALQTAEADFEAHHGVIFSLCMSPDARILVSGGSDRCIRVWDLSLVVN------SRRLAVNRARALWSD 1584
            + GS+ G I+++E++S     G+ L+T     +AH+G ++S+C+SPD R +V+GG+D+ ++ WD  L+ +      S+RL V   R L  D
Sbjct:  466 ILGSKSGKIQIFELSS-----GSLLET----IDAHNGAVWSMCLSPDQRGIVTGGADKTVKFWDFELIKDEQSEQASKRLTVKHTRTLQLD 547
[Close]
BLAST of mRNA_H-paniculata_contig474.11775.1 vs. uniprot
Match: A0A3B4C1D5_PYGNA (WD repeat domain 3 n=2 Tax=Pygocentrus nattereri TaxID=42514 RepID=A0A3B4C1D5_PYGNA)

HSP 1 Score: 61.2 bits (147), Expect = 8.960e-6
Identity = 32/90 (35.56%), Postives = 56/90 (62.22%), Query Frame = 1 
Query: 1330 VSGSRDGHIKVWEIASEPHPPGAALQTAEADFEAHHGVIFSLCMSPDARILVSGGSDRCIRVWDLSLVVNS-----RRLAVNRARALWSD 1584
            + G++ G I+++++AS     G+ L+T EA    H G ++S+C+SPD R +V+GG+D+ ++ WD  L+ ++     +RL V  AR L  D
Sbjct:  463 IIGTKSGKIQIFDLAS-----GSLLETTEA----HDGALWSICLSPDQRGIVTGGADKTVKFWDFELIKDNESGPNKRLTVKHARTLQLD 543
[Close]
BLAST of mRNA_H-paniculata_contig474.11775.1 vs. uniprot
Match: A0A8C4QVD1_EPTBU (Utp12 domain-containing protein n=1 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4QVD1_EPTBU)

HSP 1 Score: 60.5 bits (145), Expect = 1.240e-5
Identity = 33/89 (37.08%), Postives = 56/89 (62.92%), Query Frame = 1 
Query: 1330 VSGSRDGHIKVWEIASEPHPPGAALQTAEADFEAHHGVIFSLCMSPDARILVSGGSDRCIRVWDLSLVVN----SRRLAVNRARALWSD 1584
            + G+++G ++++E+AS     G+ LQ+ EA    H G ++SLC++PD R LVSGG+D+ ++ WD  L+      SR+L +  +R L  D
Sbjct:  126 ILGTKEGKLELFELAS-----GSLLQSEEA----HGGAVWSLCLNPDKRGLVSGGADKAVKFWDFELLAQPGKTSRQLCLAESRCLLLD 205
[Close]
BLAST of mRNA_H-paniculata_contig474.11775.1 vs. uniprot
Match: A0A5A9P067_9TELE (WD repeat-containing protein 3 n=1 Tax=Triplophysa tibetana TaxID=1572043 RepID=A0A5A9P067_9TELE)

HSP 1 Score: 60.5 bits (145), Expect = 1.550e-5
Identity = 31/90 (34.44%), Postives = 55/90 (61.11%), Query Frame = 1 
Query: 1330 VSGSRDGHIKVWEIASEPHPPGAALQTAEADFEAHHGVIFSLCMSPDARILVSGGSDRCIRVWDLSLVV-----NSRRLAVNRARALWSD 1584
            + G++ G I+++++AS      + L+T +A    H G ++S+C+SPD R +V+GG+D+ ++ WD  L+      N++RL VN  R L  D
Sbjct:  477 ILGTKSGKIQIFDLAS-----ASLLETTDA----HEGALWSMCLSPDQRGIVTGGADKTVKFWDFELIKDQDSGNNKRLTVNHMRTLQLD 557
[Close]
BLAST of mRNA_H-paniculata_contig474.11775.1 vs. uniprot
Match: A0A1B7TJ73_9ASCO (WD40 repeat-like protein n=1 Tax=Hanseniaspora valbyensis NRRL Y-1626 TaxID=766949 RepID=A0A1B7TJ73_9ASCO)

HSP 1 Score: 58.9 bits (141), Expect = 1.720e-5
Identity = 32/66 (48.48%), Postives = 38/66 (57.58%), Query Frame = 1 
Query:  292 VSEIFGHESYVTSVTFFG----ENYDRIVSGSYDEVAKLWDLKTKRCLRKFIGHTDGVTVVMQGPD 477
            +S + GH  +VTSV  F     EN+    S S D+ AKLWDLKT RCL  F GH  G+ VV   PD
Sbjct:  140 ISTLLGHNDWVTSVKAFTPAKTENH-LAFSASSDKTAKLWDLKTSRCLADFKGHNGGINVVATSPD 204
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig474.11775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L7H8_9PHAE4.560e-9048.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LF89_ECTSI3.770e-3237.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LF88_ECTSI5.110e-2463.10WD repeat-containing protein (Partial) (Fragment) ... [more]
A0A3Q3E665_HIPCM9.810e-737.08WD repeat domain 3 n=3 Tax=Hippocampus comes TaxID... [more]
A0A2D0R5D1_ICTPU6.830e-635.56WD repeat-containing protein 3 n=7 Tax=Siluroidei ... [more]
A0A6P8GI26_CLUHA6.830e-635.16WD repeat-containing protein 3 n=3 Tax=Clupeidae T... [more]
A0A3B4C1D5_PYGNA8.960e-635.56WD repeat domain 3 n=2 Tax=Pygocentrus nattereri T... [more]
A0A8C4QVD1_EPTBU1.240e-537.08Utp12 domain-containing protein n=1 Tax=Eptatretus... [more]
A0A5A9P067_9TELE1.550e-534.44WD repeat-containing protein 3 n=1 Tax=Triplophysa... [more]
A0A1B7TJ73_9ASCO1.720e-548.48WD40 repeat-like protein n=1 Tax=Hanseniaspora val... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig474contigH-paniculata_contig474:11368..15385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.2
Seed ortholog evalue3e-21
Seed eggNOG ortholog2880.D8LF88
KEGG koko:K02084
KEGG Pathwayko01524,ko04115,ko04210,ko04214,ko04215,ko05010,ko05012,ko05014,ko05016,ko05134,ko05152,ko05161,ko05200,ko05222,map01524,map04115,map04210,map04214,map04215,map05010,map05012,map05014,map05016,map05134,map05152,map05161,map05200,map05222
KEGG ModuleM00685
Hectar predicted targeting categoryother localisation
EggNOG free text desc.maturation of LSU-rRNA
EggNOG OGsCOG2319@1,KOG0300@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Exons3
Model size2676
Cds size1545
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig474.11775.1prot_H-paniculata_contig474.11775.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig474 11599..14485 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930408.3612795-UTR-H-paniculata_contig474:11367..115981622930408.3612795-UTR-H-paniculata_contig474:11367..11598Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig474 11368..11598 +
1691481278.374634-UTR-H-paniculata_contig474:11367..115981691481278.374634-UTR-H-paniculata_contig474:11367..11598Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig474 11368..11598 +
1622930408.4194443-UTR-H-paniculata_contig474:14485..153851622930408.4194443-UTR-H-paniculata_contig474:14485..15385Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig474 14486..15385 +
1691481278.414503-UTR-H-paniculata_contig474:14485..153851691481278.414503-UTR-H-paniculata_contig474:14485..15385Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig474 14486..15385 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930408.3776526-CDS-H-paniculata_contig474:11598..117601622930408.3776526-CDS-H-paniculata_contig474:11598..11760Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig474 11599..11760 +
1691481278.3843222-CDS-H-paniculata_contig474:11598..117601691481278.3843222-CDS-H-paniculata_contig474:11598..11760Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig474 11599..11760 +
1622930408.3923554-CDS-H-paniculata_contig474:12352..133181622930408.3923554-CDS-H-paniculata_contig474:12352..13318Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig474 12353..13318 +
1691481278.3970804-CDS-H-paniculata_contig474:12352..133181691481278.3970804-CDS-H-paniculata_contig474:12352..13318Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig474 12353..13318 +
1622930408.406143-CDS-H-paniculata_contig474:14068..144851622930408.406143-CDS-H-paniculata_contig474:14068..14485Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig474 14069..14485 +
1691481278.406516-CDS-H-paniculata_contig474:14068..144851691481278.406516-CDS-H-paniculata_contig474:14068..14485Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig474 14069..14485 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig474.11775.1

>prot_H-paniculata_contig474.11775.1 ID=prot_H-paniculata_contig474.11775.1|Name=mRNA_H-paniculata_contig474.11775.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=515bp
MANLSYRQPKMPLANPPRWLVSEIFGHESYVTSVTFFGENYDRIVSGSYD
EVAKLWDLKTKRCLRKFIGHTDGVTVVMQGPDGRVLTASEDRTVRMWDGE
TGECVKVVRSHSGSVTGLCMAGPDRIVTGSTDKKLRIFDAGGNNVGEAEL
VSEIMAVASAATAPAAPPSRWPAKPKRSSASSSGSIASPSVAPLGKLKDG
ENKPAPSGPRFRIFACGGVHIPTPARPMLRSVDVDPTATSTAVAVDNSSH
FDMCTAYKDEPDGEEGVVSSVAVSAAGVSGSGTLIAGCYDKAIRVLRNVF
PAVLTVAEVVDADCLQSAGAEACSEGEDGGDGVASKAELPHASMEILGRH
ADGVRAVAISANGRWGVSGSRDGHIKVWEIASEPHPPGAALQTAEADFEA
HHGVIFSLCMSPDARILVSGGSDRCIRVWDLSLVVNSRRLAVNRARALWS
DGRIRRARAKRSSSSSANGMGGSADGSGGGALKAFNSSREQRQHIFEGLF
ALPEIIYAKVLMYL*
back to top

mRNA from alignment at H-paniculata_contig474:11368..15385+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig474.11775.1 ID=mRNA_H-paniculata_contig474.11775.1|Name=mRNA_H-paniculata_contig474.11775.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4018bp|location=Sequence derived from alignment at H-paniculata_contig474:11368..15385+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGACGATATTTTTGAATTTTGCTCGGTCGGTCGTGCTGTGGTGTGGGGGC
CGAGAGGCGTGATCTGCCCTTCTGTTGCTGGTCAGAGATTGAAATACATA
CCGCAGTAGTGCCCGATAGGCGATTTCTGTGAAAAATTAAGGGTTCGGCA
AGGGAGAGCGACGGAGACCTAGCGCGGGTCAAGGATTGGTACTGTTGTTC
GATAAATTCAAATTGCAGACAAGCTGCAAAGATGGCGAACCTGTCCTATC
GTCAGCCGAAGATGCCGTTGGCTAATCCTCCGAGGTGGCTCGTCTCGGAG
ATATTTGGGCACGAAAGCTACGTGACCTCTGTGACTTTCTTTGGAGAAAA
TTATGACCGCATCGTAAGCGGTAGCTACGATGAGGTGGCGAAGGTGTGTT
TTGGACTAAATGTGCCACTTAATATCATGCATAGACACCGCTCTACAGAC
AGTCGTGTATTTTGCTCCTGAAAAAAGTAACCACCCCAGTGAAGGCGATG
TCTGGTATGTCTGACTTGTCCTAGGTCGGATGATGGATTTCAAAAGGTGG
GGCGGCCGATACCTTCTCGCGAAGGTAGTCAATAACAAATTAGAAGGTTC
CTCCCTTAAATATTACAACTCTCTGACTTGCACCCTACAAGCCCATGGAA
GAACTGGGATATATTGATAGTTTGATCTTGCAGGTGCTGTTGCATTTAAT
TTACTGTACAACTGTAATTCTACTGAGCACGTACATATTGTAGGGCAAGG
CAAGAAGAGAGGTCTATGGGTGAGAGGCCAGTACCACTACAGCATTGCAG
TAAAGTAGTGGCATCGCCAGCGACGGACCGTCTTGTCCTTTTCAATAATG
TAACACGGTGTGTGTTTTTCCGAGCGTCCTTCTATCAAATAAACCTTTCC
CCATACCTTTTACCCGCCTGCCCCCGGGCACACTTGCTCGTCGCGTCTAC
TGCAATCGGGAACAAACACACCGGCCAATAATTAGCTGTGGGATCTCAAG
ACAAAACGGTGTCTGCGCAAGTTCATTGGCCACACGGACGGGGTTACCGT
GGTCATGCAGGGTCCCGATGGCCGCGTCCTCACAGCGAGCGAAGACCGCA
CCGTGCGCATGTGGGACGGCGAGACGGGAGAGTGCGTGAAGGTCGTACGC
TCCCACAGCGGCAGCGTCACCGGCCTGTGTATGGCCGGCCCGGACCGGAT
CGTGACAGGTTCCACCGATAAAAAGCTAAGGATTTTCGACGCCGGCGGCA
ACAACGTTGGGGAAGCGGAGCTCGTGAGCGAGATCATGGCAGTGGCTTCT
GCAGCAACAGCACCAGCAGCGCCGCCATCACGATGGCCGGCCAAACCAAA
GCGATCATCAGCATCGAGTTCTGGAAGCATCGCATCGCCGTCGGTGGCGC
CCCTGGGGAAATTGAAAGACGGAGAAAACAAACCGGCGCCTTCCGGGCCC
CGCTTTAGAATATTCGCGTGCGGAGGCGTGCATATCCCAACCCCGGCCAG
GCCGATGCTGCGAAGCGTAGACGTGGACCCTACCGCGACGTCGACCGCGG
TCGCGGTTGACAACTCCAGCCACTTTGACATGTGCACCGCCTACAAGGAT
GAGCCGGACGGAGAAGAGGGGGTAGTCTCCTCCGTGGCCGTCTCCGCGGC
CGGGGTCAGCGGCAGTGGGACTCTGATAGCGGGTTGCTATGACAAGGCTA
TCCGGGTGTTGCGGAACGTTTTTCCTGCCGTGCTCACCGTCGCTGAGGTG
GTAGATGCTGACTGCCTTCAGTCTGCGGGGGCAGAAGCGTGTTCGGAGGG
CGAGGACGGTGGTGACGGAGTTGCCTCCAAGGCCGAACTGCCGCACGCCT
CCATGGAAATCTTGGGTCGTCACGCGGATGGCGTGCGTGCGGTTGCTATC
TCAGCTAACGGACGTTGGGGAGTCAGCGGCAGCCGTGACGGTCATATTAA
GGTGAGTCTCTCTGATGGGCTAGCTAGTAGGGGGTAGCGAGCTGACAAGC
CGGGAGGGAGAGCACGCTTTGGAGTCTGAAAAGCTACAAACCATCCTCCG
TCCCTTGTAGCGGTCGGTTGGAGTCAACACCGTACGGGCGTATAGCAGAT
GACTCTAGATTGAGCTACTGGTAGTACTGCGGCACCTAATTGGCAGCAGA
ACTTACAGAGTTTGTCCAGGTGTCAATGTGCCGATTTGTCGTACAAAAGT
ATATTTGGTTTTCTAGCAACTCCTTGGGCTGCGGGGAAAATTCATCTCTC
GATATCCTGGTCTACTCGCTGTGCGTGCCGACACGAACATGCGAAGTGTT
TCCTATTGACGCGGTGACAGTTGTTGCTAGCTGCATACCTTCCAGTTACT
TGATCATTTTGCTGGGAAATGTTTCCATTTGTCAGCACGATGTTATATGA
CCCCCCCCCTTCCTTACCGTTAGTAATTAGAAAGCTCGCTAAACATTCAC
ATTCAGCACGTTTGACCTGCGCGAAAGCACGCCCTGAGTTCGGTTAGCCA
AGATTAGTCTATCCATTTATCATTGAAGGTACCCCTGCCCCCCTCTCCGA
AGGAGCGATGGACCTTCTGAGGTCGATATTTCAGAAGCAGAGCTCCCTCC
TCTTCAGGACGCGAGGTCAACAGACTAACAACTGAGGCATGAAAATCTTG
AGTATACCCCGCTGCCCCCCCCTAAAGTTTGTGTAACTGGACTTGACTCA
GGTGTGGGAGATCGCGTCGGAGCCGCATCCGCCAGGCGCGGCTCTGCAGA
CCGCCGAGGCTGACTTCGAGGCTCATCACGGCGTAATTTTCTCGCTGTGC
ATGTCTCCGGACGCACGGATTTTGGTAAGCGGAGGCTCTGACCGTTGCAT
ACGGGTGTGGGATTTGTCGCTTGTGGTGAATTCGCGACGGCTGGCGGTTA
ATCGCGCGCGGGCGCTGTGGTCGGACGGCCGTATCCGGCGGGCGCGCGCG
AAGCGCTCTAGTAGTTCTTCTGCGAATGGCATGGGGGGGAGCGCGGATGG
CAGCGGTGGGGGTGCGTTGAAAGCGTTCAACAGCTCGAGAGAACAGCGGC
AGCATATTTTCGAGGGCTTATTTGCCCTGCCTGAGATTATCTATGCTAAG
GTACTCATGTATCTTTGACCATTTCGGCGGGTGTGCCTGTTGCTGTAAAG
GCCATGTCGTGTGTGGACTGATGTATGGAAGTGTCGGATGTGCCTACTGC
GGCGTGTATGTACACCCACTCACCGTGCTCAGTAGTTTCTGATACTGGGA
GCACAGAGGAAGAGGGGGGGAGGTAGGAATGATGAATCTAGCAAGTGTGT
TTTGCTTTTGCGATAAAAGGGGGGGGGCTTCATTTTATTCCTGTCTTTTT
CTTGGCACGCGTCTACCCACACCCCGTTCCTGATGGAAGACGGACGGAGG
CAAAAATTCGTACTGTACAATCTAACACCAGTAAAGTAGCAAGCAAGCAC
CACAGCACAGAGGTGAACGGGCTGGCTTGCATTCCCATACAGCACCGTAG
AACCCCCCCGGTGCGAGACCATGCAATTCGTAGTACTAAATAAATGGTGC
AAGTCATGGTTTGTGGAGGTTACCGATGAGGAGCAAGTAATACATCAAAT
TGACAGAAGATGCCTTTTGAATTGACTCCCCCACGAATTAGCGGAGAAGG
GAAGGGTAGGGTAGTTTAGGCCATAATCGCGGCCGGATATACTCTTGGGC
AATTTTGGGGTGCCGTAAGGAGGGAGGGCATGCCAGAGCTGGACCCTACC
CAGCTTGGAGATTGTAACGTAGTTGAAAAACTTTGTCTTCATGAAATCAG
TGGATCTTCTTCATCAGGCGCATTCAAATATATTTTCATGATTGAATAGA
ACTGCCTTCGATCATTTTTCAAGCCAAAATCGGTGAGGAGGGAAGTGGTA
GGGCTGCTCCAAGATGAAGCAATGAAACAAGCGCACATGCAGTGCTTTGG
TGTTTTAAAGTGCCACCCGACGGCGTGGACGGGCTCTCAGCAGCCGGAGG
TTTGCCGTAGTTTGCGGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig474:11368..15385+

>mRNA_H-paniculata_contig474.11775.1 ID=mRNA_H-paniculata_contig474.11775.1|Name=mRNA_H-paniculata_contig474.11775.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3090bp|location=Sequence derived from alignment at H-paniculata_contig474:11368..15385+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGAACCTGTCCTATCGTCAGCCGAAGATGCCGTTGGCTAATCCTCC
GAGGTGGCTCGTCTCGGAGATATTTGGGCACGAAAGCTACGTGACCTCTG
TGACTTTCTTTGGAGAAAATTATGACCGCATCGTAAGCGGTAGCTACGAT
GAGGTGGCGAAGATGGCGAACCTGTCCTATCGTCAGCCGAAGATGCCGTT
GGCTAATCCTCCGAGGTGGCTCGTCTCGGAGATATTTGGGCACGAAAGCT
ACGTGACCTCTGTGACTTTCTTTGGAGAAAATTATGACCGCATCGTAAGC
GGTAGCTACGATGAGGTGGCGAAGCTGTGGGATCTCAAGACAAAACGGTG
TCTGCGCAAGTTCATTGGCCACACGGACGGGGTTACCGTGGTCATGCAGG
GTCCCGATGGCCGCGTCCTCACAGCGAGCGAAGACCGCACCGTGCGCATG
TGGGACGGCGAGACGGGAGAGTGCGTGAAGGTCGTACGCTCCCACAGCGG
CAGCGTCACCGGCCTGTGTATGGCCGGCCCGGACCGGATCGTGACAGGTT
CCACCGATAAAAAGCTAAGGATTTTCGACGCCGGCGGCAACAACGTTGGG
GAAGCGGAGCTCGTGAGCGAGATCATGGCAGTGGCTTCTGCAGCAACAGC
ACCAGCAGCGCCGCCATCACGATGGCCGGCCAAACCAAAGCGATCATCAG
CATCGAGTTCTGGAAGCATCGCATCGCCGTCGGTGGCGCCCCTGGGGAAA
TTGAAAGACGGAGAAAACAAACCGGCGCCTTCCGGGCCCCGCTTTAGAAT
ATTCGCGTGCGGAGGCGTGCATATCCCAACCCCGGCCAGGCCGATGCTGC
GAAGCGTAGACGTGGACCCTACCGCGACGTCGACCGCGGTCGCGGTTGAC
AACTCCAGCCACTTTGACATGTGCACCGCCTACAAGGATGAGCCGGACGG
AGAAGAGGGGGTAGTCTCCTCCGTGGCCGTCTCCGCGGCCGGGGTCAGCG
GCAGTGGGACTCTGATAGCGGGTTGCTATGACAAGGCTATCCGGGTGTTG
CGGAACGTTTTTCCTGCCGTGCTCACCGTCGCTGAGGTGGTAGATGCTGA
CTGCCTTCAGTCTGCGGGGGCAGAAGCGTGTTCGGAGGGCGAGGACGGTG
GTGACGGAGTTGCCTCCAAGGCCGAACTGCCGCACGCCTCCATGGAAATC
TTGGGTCGTCACGCGGATGGCGTGCGTGCGGTTGCTATCTCAGCTAACGG
ACGTTGGGGAGTCAGCGGCAGCCGTGACGGTCATATTAAGCTGTGGGATC
TCAAGACAAAACGGTGTCTGCGCAAGTTCATTGGCCACACGGACGGGGTT
ACCGTGGTCATGCAGGGTCCCGATGGCCGCGTCCTCACAGCGAGCGAAGA
CCGCACCGTGCGCATGTGGGACGGCGAGACGGGAGAGTGCGTGAAGGTCG
TACGCTCCCACAGCGGCAGCGTCACCGGCCTGTGTATGGCCGGCCCGGAC
CGGATCGTGACAGGTTCCACCGATAAAAAGCTAAGGATTTTCGACGCCGG
CGGCAACAACGTTGGGGAAGCGGAGCTCGTGAGCGAGATCATGGCAGTGG
CTTCTGCAGCAACAGCACCAGCAGCGCCGCCATCACGATGGCCGGCCAAA
CCAAAGCGATCATCAGCATCGAGTTCTGGAAGCATCGCATCGCCGTCGGT
GGCGCCCCTGGGGAAATTGAAAGACGGAGAAAACAAACCGGCGCCTTCCG
GGCCCCGCTTTAGAATATTCGCGTGCGGAGGCGTGCATATCCCAACCCCG
GCCAGGCCGATGCTGCGAAGCGTAGACGTGGACCCTACCGCGACGTCGAC
CGCGGTCGCGGTTGACAACTCCAGCCACTTTGACATGTGCACCGCCTACA
AGGATGAGCCGGACGGAGAAGAGGGGGTAGTCTCCTCCGTGGCCGTCTCC
GCGGCCGGGGTCAGCGGCAGTGGGACTCTGATAGCGGGTTGCTATGACAA
GGCTATCCGGGTGTTGCGGAACGTTTTTCCTGCCGTGCTCACCGTCGCTG
AGGTGGTAGATGCTGACTGCCTTCAGTCTGCGGGGGCAGAAGCGTGTTCG
GAGGGCGAGGACGGTGGTGACGGAGTTGCCTCCAAGGCCGAACTGCCGCA
CGCCTCCATGGAAATCTTGGGTCGTCACGCGGATGGCGTGCGTGCGGTTG
CTATCTCAGCTAACGGACGTTGGGGAGTCAGCGGCAGCCGTGACGGTCAT
ATTAAGGTGTGGGAGATCGCGTCGGAGCCGCATCCGCCAGGCGCGGCTCT
GCAGACCGCCGAGGCTGACTTCGAGGCTCATCACGGCGTAATTTTCTCGC
TGTGCATGTCTCCGGACGCACGGATTTTGGTAAGCGGAGGCTCTGACCGT
TGCATACGGGTGTGGGATTTGTCGCTTGTGGTGAATTCGCGACGGCTGGC
GGTTAATCGCGCGCGGGCGCTGTGGTCGGACGGCCGTATCCGGCGGGCGC
GCGCGAAGCGCTCTAGTAGTTCTTCTGCGAATGGCATGGGGGGGAGCGCG
GATGGCAGCGGTGGGGGTGCGTTGAAAGCGTTCAACAGCTCGAGAGAACA
GCGGCAGCATATTTTCGAGGGCTTATTTGCCCTGCCTGAGATTATCTATG
CTAAGGTACTCATGTATCTTTGAGTGTGGGAGATCGCGTCGGAGCCGCAT
CCGCCAGGCGCGGCTCTGCAGACCGCCGAGGCTGACTTCGAGGCTCATCA
CGGCGTAATTTTCTCGCTGTGCATGTCTCCGGACGCACGGATTTTGGTAA
GCGGAGGCTCTGACCGTTGCATACGGGTGTGGGATTTGTCGCTTGTGGTG
AATTCGCGACGGCTGGCGGTTAATCGCGCGCGGGCGCTGTGGTCGGACGG
CCGTATCCGGCGGGCGCGCGCGAAGCGCTCTAGTAGTTCTTCTGCGAATG
GCATGGGGGGGAGCGCGGATGGCAGCGGTGGGGGTGCGTTGAAAGCGTTC
AACAGCTCGAGAGAACAGCGGCAGCATATTTTCGAGGGCTTATTTGCCCT
GCCTGAGATTATCTATGCTAAGGTACTCATGTATCTTTGA
back to top