mRNA_H-paniculata_contig47393.11774.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig47393.11774.1
Unique NamemRNA_H-paniculata_contig47393.11774.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig47393.11774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig47393contigH-paniculata_contig47393:558..1235 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size679
Cds size429
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930408.2926078-CDS-H-paniculata_contig47393:557..9861622930408.2926078-CDS-H-paniculata_contig47393:557..986Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47393 558..986 +
1691481278.3578184-CDS-H-paniculata_contig47393:557..9861691481278.3578184-CDS-H-paniculata_contig47393:557..986Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47393 558..986 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930408.3111405-UTR-H-paniculata_contig47393:986..12351622930408.3111405-UTR-H-paniculata_contig47393:986..1235Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig47393 987..1235 +
1691481278.3663118-UTR-H-paniculata_contig47393:986..12351691481278.3663118-UTR-H-paniculata_contig47393:986..1235Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig47393 987..1235 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig47393.11774.1prot_H-paniculata_contig47393.11774.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig47393 558..986 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig47393.11774.1

>prot_H-paniculata_contig47393.11774.1 ID=prot_H-paniculata_contig47393.11774.1|Name=mRNA_H-paniculata_contig47393.11774.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=143bp
ATQEPFSKRAIICALLSRLARPNPLNRGRRGVRKTLTSHAHVHFAQTQQR
SANICSKYLPYHNSCVCIYIYIYTSQRKHYEVKTLYTLVDFLAPNSSTLL
TATLLKQYEHTMVDVVRIPFAVEGIITLPRQGTTTAKNEAYS*
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mRNA from alignment at H-paniculata_contig47393:558..1235+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig47393.11774.1 ID=mRNA_H-paniculata_contig47393.11774.1|Name=mRNA_H-paniculata_contig47393.11774.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=678bp|location=Sequence derived from alignment at H-paniculata_contig47393:558..1235+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGACTCAGGAACCTTTTTCAAAACGCGCTATCATATGTGCACTACTTTC
AAGACTCGCTCGGCCTAACCCCCTGAACAGAGGGAGGAGGGGGGTTCGCA
AGACATTGACAAGCCACGCTCATGTCCACTTCGCACAAACCCAACAACGG
AGCGCCAACATATGTAGTAAATATCTACCGTATCACAACTCCTGTGTGTG
TATATATATATATATATATACTTCACAACGAAAACACTACGAGGTGAAGA
CACTTTATACCCTTGTCGATTTTCTCGCACCCAACAGCTCTACTCTTCTA
ACAGCGACACTTTTGAAACAATACGAGCACACCATGGTTGATGTGGTGCG
GATCCCCTTCGCGGTCGAAGGTATAATAACACTCCCCAGACAAGGAACGA
CAACAGCAAAAAACGAGGCTTACTCGTAGAATTGCCTTGAAAATTCATAC
CCTCTTTGCAAGAAAACCGGGCGGGAAAAACGCGCTCGACCACACACTCA
TTGACACAAAAAACATCGTATACCACATCATTTTTAGAGGTGAGCACAAA
GACCTCTTTCAAAAACCTTGTGTGTGCATGCAGCCACAGCTACCACGAGT
CACACCTGAAACAGATTTCTATCACCTCGTGACTAGATGTAAAATAATAC
GAAGAAAACACTAAAAAAACTTGGATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig47393:558..1235+

>mRNA_H-paniculata_contig47393.11774.1 ID=mRNA_H-paniculata_contig47393.11774.1|Name=mRNA_H-paniculata_contig47393.11774.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=858bp|location=Sequence derived from alignment at H-paniculata_contig47393:558..1235+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGACTCAGGAACCTTTTTCAAAACGCGCTATCATATGTGCACTACTTTC
AAGACTCGCTCGGCCTAACCCCCTGAACAGAGGGAGGAGGGGGGTTCGCA
AGACATTGACAAGCCACGCTCATGTCCACTTCGCACAAACCCAACAACGG
AGCGCCAACATATGTAGTAAATATCTACCGTATCACAACTCCTGTGTGTG
TATATATATATATATATATACTTCACAACGAAAACACTACGAGGTGAAGA
CACTTTATACCCTTGTCGATTTTCTCGCACCCAACAGCTCTACTCTTCTA
ACAGCGACACTTTTGAAACAATACGAGCACACCATGGTTGATGTGGTGCG
GATCCCCTTCGCGGTCGAAGGTATAATAACACTCCCCAGACAAGGAACGA
CAACAGCAAAAAACGAGGCTTACTCGTAGGCGACTCAGGAACCTTTTTCA
AAACGCGCTATCATATGTGCACTACTTTCAAGACTCGCTCGGCCTAACCC
CCTGAACAGAGGGAGGAGGGGGGTTCGCAAGACATTGACAAGCCACGCTC
ATGTCCACTTCGCACAAACCCAACAACGGAGCGCCAACATATGTAGTAAA
TATCTACCGTATCACAACTCCTGTGTGTGTATATATATATATATATATAC
TTCACAACGAAAACACTACGAGGTGAAGACACTTTATACCCTTGTCGATT
TTCTCGCACCCAACAGCTCTACTCTTCTAACAGCGACACTTTTGAAACAA
TACGAGCACACCATGGTTGATGTGGTGCGGATCCCCTTCGCGGTCGAAGG
TATAATAACACTCCCCAGACAAGGAACGACAACAGCAAAAAACGAGGCTT
ACTCGTAG
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