mRNA_H-paniculata_contig4738.11771.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4738.11771.1
Unique NamemRNA_H-paniculata_contig4738.11771.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4738.11771.1 vs. uniprot
Match: D7FX58_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX58_ECTSI)

HSP 1 Score: 296 bits (758), Expect = 9.120e-95
Identity = 150/179 (83.80%), Postives = 160/179 (89.39%), Query Frame = 1 
Query:  289 MFYLKELKRPMLIPPSDFGPKLKDTVRRKLIEEVEGTSVGNLGFVITVTEVTDEHITLGTIEFDTGFVNVVAVYRAICFRPFVNEVLDAAVSHVTELGFFAEVGPLEVFVSRLGMPDEIAGGYDAVGDMWVSSEDSDTEIKAGCGVRLRIIGVTVGAELVRKFEHSPVFSGRAGLVSGP 825
            MFYLKEL+RPML+PPSDFGPKLKDT+RRKLIEEVEGTSVG+LGFVITVT V+D+ I +GTIEFDTGF NV+ VYRAICFRPFVNEVLDAAVSHVTELGFFAEVGPLEVFVSRLGMPD+IAGGYD VGDMWVSSEDSDTEIK+GCGVRLRIIGVTVGAEL         F    GLVSGP
Sbjct:    1 MFYLKELRRPMLVPPSDFGPKLKDTIRRKLIEEVEGTSVGSLGFVITVTNVSDDQIQMGTIEFDTGFANVLVVYRAICFRPFVNEVLDAAVSHVTELGFFAEVGPLEVFVSRLGMPDDIAGGYDPVGDMWVSSEDSDTEIKSGCGVRLRIIGVTVGAELKAVGSIKDDF---LGLVSGP 176
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BLAST of mRNA_H-paniculata_contig4738.11771.1 vs. uniprot
Match: A0A835YX29_9STRA (S1 motif domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX29_9STRA)

HSP 1 Score: 199 bits (507), Expect = 1.970e-57
Identity = 103/162 (63.58%), Postives = 125/162 (77.16%), Query Frame = 1 
Query:  289 MFYLKELKRPMLIPPSDFGPKLKDTVRRKLIEEVEGTSVGNLGFVITVTEVTDEHITL--GTIEFDTGFVNVVAVYRAICFRPFVNEVLDAAVSHVTELGFFAEVGPLEVFVSRLGMPDEIAG-GYDAVGDMWVSSEDSDTEIKAGCGVRLRIIGVTVGAEL 765
            MFYLK LK+ +L+ P  FGP L + V R L+E+VEG S+GN GFVI+V      + ++  GTIE+DTG  N++  Y AICFRPF NEVLDA VS+VT+LGFFAEVGPLE+FVSR  MP++IA  GYD+VGDMWVS ED + EIK GCGVRLRIIG+TV AEL
Sbjct:    1 MFYLKTLKKDLLLEPQFFGPNLHEVVGRLLLEQVEGMSLGNDGFVISVFSQNSANTSMEMGTIEYDTGAANIICTYEAICFRPFRNEVLDATVSNVTDLGFFAEVGPLEIFVSRFNMPEDIANTGYDSVGDMWVS-EDKEVEIKKGCGVRLRIIGITVEAEL 161
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BLAST of mRNA_H-paniculata_contig4738.11771.1 vs. uniprot
Match: A0A6S9LV75_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9LV75_HETAK)

HSP 1 Score: 195 bits (496), Expect = 8.320e-56
Identity = 102/181 (56.35%), Postives = 131/181 (72.38%), Query Frame = 1 
Query:  289 MFYLKELKRPMLIPPSDFGPKLKDTVRRKLIEEVEGTSVGNLGFVITVTEVTDEHITLGTIEFDTGFVNVVAVYRAICFRPFVNEVLDAAVSHVTELGFFAEVGPLEVFVSRLGMPDEIAGGYDAVGDMWVSSEDSDTEIKAGCGVRLRIIGVTVGAELVRKFEHSPVFSGRAGLVSGPES 831
            MF+LK+L R + +PP+  GPKLK+T+RR+LIEEVEG +VG LG+VITVTE+ DE I+ G IE+D+GFV    VY AICFRPF +EVLDA +S VTELGFFA+VGPL VFVSR  MP ++  GYD   ++W  SED + E++AG GVRLRI+G++V A  +       V     GLVS  E+
Sbjct:    1 MFFLKQLTRELQLPPAFLGPKLKETIRRRLIEEVEGQAVGKLGYVITVTEMKDEAISQGLIEYDSGFVTFNVVYSAICFRPFRDEVLDATISSVTELGFFADVGPLTVFVSRHAMPADLQEGYDPARELW-QSEDREVELRAGAGVRLRIMGLSVDAADISAI--GTVADDYLGLVSAAEA 178
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BLAST of mRNA_H-paniculata_contig4738.11771.1 vs. uniprot
Match: A0A7S2Y2T3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y2T3_9STRA)

HSP 1 Score: 184 bits (466), Expect = 1.980e-51
Identity = 97/180 (53.89%), Postives = 126/180 (70.00%), Query Frame = 1 
Query:  289 MFYLKELKRPMLIPPSDFGPKLKDTVRRKLIEEVEGTSVGNLGFVITVTEVTDEHITLGTIEFDTGFVNVVAVYRAICFRPFVNEVLDAAVSHVTELGFFAEVGPLEVFVSRLGMPDEIAGGYDAVGDMWVSSEDSDTEIKAGCGVRLRIIGVTVGAELVRKFEHSPVFSGRAGLVSGPE 828
            MF+LKEL R +L+PP+  GPK+K+T+RR+LIEEVEGT +G  G+VITVTEV +E +  G I  + G V     Y AICFRPF  EVLDA V+ VTELGFFAEVGPL+VFVSR  MP ++  G+DA  ++WVS ED + E++ GCGVRLRI+G++V A  +       +     GL+S  E
Sbjct:    1 MFFLKELTRELLLPPAYLGPKIKETIRRRLIEEVEGTCLGKYGYVITVTEVKEEGMKTGVISNEFGEVIFHISYDAICFRPFKGEVLDANVTVVTELGFFAEVGPLQVFVSRHAMPQDLQEGFDAANEVWVS-EDKEVELRQGCGVRLRIMGLSVDAADISAI--GTIKDDYLGLISAAE 177
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BLAST of mRNA_H-paniculata_contig4738.11771.1 vs. uniprot
Match: A0A225WVR4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WVR4_9STRA)

HSP 1 Score: 178 bits (451), Expect = 2.180e-49
Identity = 93/162 (57.41%), Postives = 120/162 (74.07%), Query Frame = 1 
Query:  289 MFYLKELKRPMLIPPSDFGPKLKDTVRRKLIEEVEGTSVGNLGFVITVTEVTDEHITLGTIEFDTGFVNVVAVYRAICFRPFVNEVLDAAVSHVTELGFFAEVGPLEVFVSRLGMPDEIAGGYDAVGDMWVSSEDSDTEIKAGCGVRLRIIGVTVGA-ELVR 771
            MF+LK+L R +L+ P  FGPKL D +R +LIEEVEGTS+G  G+VITVTEV DE I  G I+ ++GFV     YRAI FRPF N+VLDA V+ V +LGFFA+VGPL+VFVSR  MP ++  GYD   + W+S +D + EI+ GCGVRL+I+GV+V   E+VR
Sbjct:    1 MFFLKQLSRDLLLHPMHFGPKLHDIIRLRLIEEVEGTSMGKYGYVITVTEVRDEDIGKGVIQDNSGFVCFNIRYRAILFRPFKNQVLDAVVTVVNQLGFFADVGPLQVFVSRHAMPTDLNNGYDHESNAWIS-DDREVEIRKGCGVRLKIMGVSVDVTEIVR 161
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BLAST of mRNA_H-paniculata_contig4738.11771.1 vs. uniprot
Match: K3XAJ8_GLOUD (Uncharacterized protein n=27 Tax=Oomycota TaxID=4762 RepID=K3XAJ8_GLOUD)

HSP 1 Score: 177 bits (448), Expect = 7.420e-49
Identity = 90/155 (58.06%), Postives = 116/155 (74.84%), Query Frame = 1 
Query:  289 MFYLKELKRPMLIPPSDFGPKLKDTVRRKLIEEVEGTSVGNLGFVITVTEVTDEHITLGTIEFDTGFVNVVAVYRAICFRPFVNEVLDAAVSHVTELGFFAEVGPLEVFVSRLGMPDEIAGGYDAVGDMWVSSEDSDTEIKAGCGVRLRIIGVTV 753
            MF+LK+L R +L+ P  FGPKL D +R +LIEEVEGTS+G  G+VITVTEV DE I  G I+ ++GFV     YRAI FRPF N+VLDA V+ V +LGFFA+VGPL+VFVSR  MP ++  GYD   + W+S +D + EI+ GCGVRL+I+GV+V
Sbjct:    1 MFFLKQLSRDLLLHPMHFGPKLHDIIRLRLIEEVEGTSMGKYGYVITVTEVRDEDIGKGVIQDNSGFVCFNIRYRAILFRPFKNQVLDAVVTVVNQLGFFADVGPLQVFVSRHAMPTDLNNGYDHENNAWIS-DDREVEIRKGCGVRLKIMGVSV 154
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BLAST of mRNA_H-paniculata_contig4738.11771.1 vs. uniprot
Match: A0A024TU38_9STRA (Uncharacterized protein n=8 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024TU38_9STRA)

HSP 1 Score: 171 bits (434), Expect = 7.640e-47
Identity = 89/155 (57.42%), Postives = 113/155 (72.90%), Query Frame = 1 
Query:  289 MFYLKELKRPMLIPPSDFGPKLKDTVRRKLIEEVEGTSVGNLGFVITVTEVTDEHITLGTIEFDTGFVNVVAVYRAICFRPFVNEVLDAAVSHVTELGFFAEVGPLEVFVSRLGMPDEIAGGYDAVGDMWVSSEDSDTEIKAGCGVRLRIIGVTV 753
            MF+LK+LKR +L+ P  FGPKL D +R +LIEEVEGTS+G  G+VI VTEV DE I  G I+ ++GFV     YRAI FRPF NEVLDA V+ V +LGFFAEVGPL+VFVSR  M  ++  GYD     W+S +D + EI+ G GVRL+I+GV++
Sbjct:    1 MFFLKQLKRELLLHPMHFGPKLHDIIRLRLIEEVEGTSLGKFGYVIAVTEVRDEDIGQGVIQDNSGFVCFNIAYRAILFRPFKNEVLDAVVTVVNQLGFFAEVGPLQVFVSRHAMSTDLNEGYDHEQSAWIS-QDREVEIRKGVGVRLKIMGVSI 154
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BLAST of mRNA_H-paniculata_contig4738.11771.1 vs. uniprot
Match: A0A024GUM2_9STRA (ING domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GUM2_9STRA)

HSP 1 Score: 177 bits (448), Expect = 8.850e-46
Identity = 89/158 (56.33%), Postives = 117/158 (74.05%), Query Frame = 1 
Query:  280 LLDMFYLKELKRPMLIPPSDFGPKLKDTVRRKLIEEVEGTSVGNLGFVITVTEVTDEHITLGTIEFDTGFVNVVAVYRAICFRPFVNEVLDAAVSHVTELGFFAEVGPLEVFVSRLGMPDEIAGGYDAVGDMWVSSEDSDTEIKAGCGVRLRIIGVTV 753
            L++MF+LK+L R +L+ P  FGPKL D +R +LIEEVEGTS+G  G+VITVTEV DE I  G I+  +G+V     YRAI FRPF N+VLDA VS V +LGFFA+VGPL+VFVSR  MP ++  GYD   + W+S +D + EI+  CG+RLRI+GV++
Sbjct:  262 LVNMFFLKQLSRDLLLHPMHFGPKLHDIIRLRLIEEVEGTSMGKYGYVITVTEVRDEDIGKGVIQDSSGYVCFNIRYRAILFRPFKNQVLDAVVSVVNQLGFFADVGPLQVFVSRHAMPTDLNNGYDHENNAWIS-DDREVEIRKSCGIRLRIMGVSI 418
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BLAST of mRNA_H-paniculata_contig4738.11771.1 vs. uniprot
Match: A0A425DP05_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425DP05_9STRA)

HSP 1 Score: 170 bits (431), Expect = 1.040e-45
Identity = 88/155 (56.77%), Postives = 113/155 (72.90%), Query Frame = 1 
Query:  289 MFYLKELKRPMLIPPSDFGPKLKDTVRRKLIEEVEGTSVGNLGFVITVTEVTDEHITLGTIEFDTGFVNVVAVYRAICFRPFVNEVLDAAVSHVTELGFFAEVGPLEVFVSRLGMPDEIAGGYDAVGDMWVSSEDSDTEIKAGCGVRLRIIGVTV 753
            MF+LK+LKR +L+ P  FGPKL D +R +LIEEVEGTS+G  G+VI VTEV DE I  G I+ ++G+V     YRAI FRPF NEVLDA V+ V +LGFFAEVGPL+VFVSR  M  ++  GYD     W+S +D + EI+ G GVRL+I+GV++
Sbjct:    1 MFFLKQLKRELLLHPMHFGPKLHDIIRLRLIEEVEGTSLGKFGYVIAVTEVRDEDIGQGVIQDNSGYVCFNIAYRAILFRPFKNEVLDAVVTVVNQLGFFAEVGPLQVFVSRHAMSTDLNEGYDHEQSAWIS-QDREVEIRKGVGVRLKIMGVSI 154
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BLAST of mRNA_H-paniculata_contig4738.11771.1 vs. uniprot
Match: A0A662WW13_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WW13_9STRA)

HSP 1 Score: 179 bits (455), Expect = 1.760e-44
Identity = 97/176 (55.11%), Postives = 125/176 (71.02%), Query Frame = 1 
Query:  289 MFYLKELKRPMLIPPSDFGPKLKDTVRRKLIEEVEGTSVGNLGFVITVTEVTDEHITLGTIEFDTGFVNVVAVYRAICFRPFVNEVLDAAVSHVTELGFFAEVGPLEVFVSRLGMPDEIAGGYDAVGDMWVSSEDSDTEIKAGCGVRLRIIGVTVGA-ELVRKF-EHSPVFSGRAG 810
            MF+LK+L R +L+ P  FGPKL D +R +LIEEVEGTS+G  G+VITVTEV DE I  G I+ ++GFV     YRAI FRPF N+VLDA V+ V +LGFFA+VGPL+VFVSR  MP ++  GYD   + W+S +D + EI+ GCGVRL+I+GV+V   E+VR+     P  S  AG
Sbjct:    1 MFFLKQLSRDLLLHPMHFGPKLHDIIRLRLIEEVEGTSMGKYGYVITVTEVRDEDIGKGVIQDNSGFVCFNIRYRAILFRPFKNQVLDAVVTVVNQLGFFADVGPLQVFVSRHAMPTDLNNGYDHESNAWIS-DDREVEIRKGCGVRLKIMGVSVDVTEIVRELASFRPTTSKEAG 175
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4738.11771.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX58_ECTSI9.120e-9583.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YX29_9STRA1.970e-5763.58S1 motif domain-containing protein n=1 Tax=Tribone... [more]
A0A6S9LV75_HETAK8.320e-5656.35Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2Y2T3_9STRA1.980e-5153.89Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A225WVR4_9STRA2.180e-4957.41Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
K3XAJ8_GLOUD7.420e-4958.06Uncharacterized protein n=27 Tax=Oomycota TaxID=47... [more]
A0A024TU38_9STRA7.640e-4757.42Uncharacterized protein n=8 Tax=Saprolegniaceae Ta... [more]
A0A024GUM2_9STRA8.850e-4656.33ING domain-containing protein n=1 Tax=Albugo candi... [more]
A0A425DP05_9STRA1.040e-4556.77Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A662WW13_9STRA1.760e-4455.11Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4738contigH-paniculata_contig4738:3028..8011 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score297.4
Seed ortholog evalue5.4e-78
Seed eggNOG ortholog2880.D7FX58
Preferred namePOLR2G
KEGG rclassRC00003,RC00060,RC00181,RC00496,RC02795
KEGG koko:K03015,ko:K09186
KEGG ReactionR00435,R00441,R00442,R00443,R03875,R03938,R04866,R04867
KEGG Pathwayko00230,ko00240,ko00310,ko01100,ko03020,ko04934,ko05016,ko05169,ko05202,map00230,map00240,map00310,map01100,map03020,map04934,map05016,map05169,map05202
KEGG ModuleM00180
Hectar predicted targeting categoryother localisation
GOsGO:0000291,GO:0000375,GO:0000377,GO:0000398,GO:0000428,GO:0000932,GO:0000956,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003723,GO:0003727,GO:0003824,GO:0003899,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006352,GO:0006354,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006417,GO:0006446,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008150,GO:0008152,GO:0008219,GO:0008380,GO:0008543,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009301,GO:0009452,GO:0009719,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010590,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0012501,GO:0016070,GO:0016071,GO:0016073,GO:0016591,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0023052,GO:0030880,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031369,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032774,GO:0032991,GO:0033554,GO:0034062,GO:0034248,GO:0034250,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034660,GO:0035770,GO:0036260,GO:0036464,GO:0042221,GO:0042795,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044344,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045727,GO:0045935,GO:0045948,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051302,GO:0051716,GO:0055029,GO:0060147,GO:0060211,GO:0060213,GO:0060255,GO:0060964,GO:0060966,GO:0060968,GO:0061013,GO:0061014,GO:0061695,GO:0065007,GO:0070013,GO:0070848,GO:0070887,GO:0071310,GO:0071363,GO:0071495,GO:0071704,GO:0071774,GO:0080090,GO:0090304,GO:0097159,GO:0097393,GO:0097394,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1900151,GO:1900153,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902494,GO:1903311,GO:1903313,GO:1990234,GO:1990904,GO:2000112
EggNOG free text desc.positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
EggNOG OGsCOG1095@1,KOG3298@2759
EC2.1.1.43
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03000,ko03019,ko03021,ko03036,ko03400
Exons6
Model size1739
Cds size624
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4738.11771.1prot_H-paniculata_contig4738.11771.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4738 3316..7184 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930407.728272-UTR-H-paniculata_contig4738:3027..33151622930407.728272-UTR-H-paniculata_contig4738:3027..3315Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4738 3028..3315 +
1691481278.031414-UTR-H-paniculata_contig4738:3027..33151691481278.031414-UTR-H-paniculata_contig4738:3027..3315Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4738 3028..3315 +
1622930407.8292134-UTR-H-paniculata_contig4738:7184..80111622930407.8292134-UTR-H-paniculata_contig4738:7184..8011Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4738 7185..8011 +
1691481278.1120722-UTR-H-paniculata_contig4738:7184..80111691481278.1120722-UTR-H-paniculata_contig4738:7184..8011Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4738 7185..8011 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930407.7435303-CDS-H-paniculata_contig4738:3315..33271622930407.7435303-CDS-H-paniculata_contig4738:3315..3327Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4738 3316..3327 +
1691481278.0455444-CDS-H-paniculata_contig4738:3315..33271691481278.0455444-CDS-H-paniculata_contig4738:3315..3327Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4738 3316..3327 +
1622930407.7598484-CDS-H-paniculata_contig4738:4073..41411622930407.7598484-CDS-H-paniculata_contig4738:4073..4141Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4738 4074..4141 +
1691481278.058041-CDS-H-paniculata_contig4738:4073..41411691481278.058041-CDS-H-paniculata_contig4738:4073..4141Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4738 4074..4141 +
1622930407.7713454-CDS-H-paniculata_contig4738:4637..47071622930407.7713454-CDS-H-paniculata_contig4738:4637..4707Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4738 4638..4707 +
1691481278.0733821-CDS-H-paniculata_contig4738:4637..47071691481278.0733821-CDS-H-paniculata_contig4738:4637..4707Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4738 4638..4707 +
1622930407.7826066-CDS-H-paniculata_contig4738:5405..55941622930407.7826066-CDS-H-paniculata_contig4738:5405..5594Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4738 5406..5594 +
1691481278.0831115-CDS-H-paniculata_contig4738:5405..55941691481278.0831115-CDS-H-paniculata_contig4738:5405..5594Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4738 5406..5594 +
1622930407.7975132-CDS-H-paniculata_contig4738:5891..60901622930407.7975132-CDS-H-paniculata_contig4738:5891..6090Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4738 5892..6090 +
1691481278.0919542-CDS-H-paniculata_contig4738:5891..60901691481278.0919542-CDS-H-paniculata_contig4738:5891..6090Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4738 5892..6090 +
1622930407.8110092-CDS-H-paniculata_contig4738:7098..71841622930407.8110092-CDS-H-paniculata_contig4738:7098..7184Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4738 7099..7184 +
1691481278.1004033-CDS-H-paniculata_contig4738:7098..71841691481278.1004033-CDS-H-paniculata_contig4738:7098..7184Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4738 7099..7184 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4738.11771.1

>prot_H-paniculata_contig4738.11771.1 ID=prot_H-paniculata_contig4738.11771.1|Name=mRNA_H-paniculata_contig4738.11771.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=208bp
MFYLKELKRPMLIPPSDFGPKLKDTVRRKLIEEVEGTSVGNLGFVITVTE
VTDEHITLGTIEFDTGFVNVVAVYRAICFRPFVNEVLDAAVSHVTELGFF
AEVGPLEVFVSRLGMPDEIAGGYDAVGDMWVSSEDSDTEIKAGCGVRLRI
IGVTVGAELVRKFEHSPVFSGRAGLVSGPESCREHQGRFPWTRVWACIAT
GVFSTRW*
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mRNA from alignment at H-paniculata_contig4738:3028..8011+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4738.11771.1 ID=mRNA_H-paniculata_contig4738.11771.1|Name=mRNA_H-paniculata_contig4738.11771.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4984bp|location=Sequence derived from alignment at H-paniculata_contig4738:3028..8011+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGTAAACCCTCATGTGTCGGGACGTAGCGTAGGGAAGAAACGCGGTTGG
AGAGCTTCTTTATTTCGTGTGCCTTTTCTGATTGCACTGCGCTCAGAACA
CCGTTATAGTTACCTCCGTAGCCAACTGCACTCTTCACACCAGAAAATAA
AACAGTAGAGTCTCCACGGTTCGCACTCGCAAAGACGGTAACGTAGGGGA
CCACAGGCAACCGAGACTGGGAGCGGCCAGCCAGAGACTGGGCCAGCTGG
AGAGCAGTTGACACGAACTCAGCTACCCGCTGTTAGATATGTTCTATCTC
GTGAGTTCTATGTCATATAGTACAACATAGACTTGATACAGTCGGTGTGA
TATGTTGTTTCTGGTAAATTGAGACAGTTTTATCTCTTTTCGGGGCAAGG
TGGGCATTTGGGTTGCGGGATGTCTCTGTTAGCGCAGCAGGACTGCTGTC
GCATATACTAAAATTGCCATCACAGCTACTCACTGCGCTGCCTTTACCGT
AGAGTAGGCCAGGCTTGTTTAGCTGCACTACAATCGTGCAGACAGACACA
TCAATGCAAAACGACATGCCTTCAACCTAGTACGTTTACGCTGCGGTAAG
TATTTTAGGTCGAGTGGGAGCGTCTGTACGAATGGCACTAGAATAACGCA
GCCAGGGTTTCCTTCCCAAAAAAACTATTTCCGAGGCGTAACCGTCGGTA
TTATCAAAATATCATCTGGAATTGTTCGTTGTAGAGTGTTTGCAATCTGT
TGTTTAGGCCGTCCTCCTATGGTCCAATATAGAGCTTTACGTCCTTAGAT
AAGACCATACATTTGTCGATGCTCCTTGATGGAGATATGTACAATATACT
ACATTACAGGGGCGGCAATTCAAATGGAGACTTGTTGTCGTGGTCGCAGA
CTATTTGCTCGCCAAGCCCGTGCAGTAAGCCGTCGCATCGAGGTGATATG
TATTTATACTTCATTGCGCTCATGGTGACTGCTTTTCGTAGTCGACATGA
AATCTCGTGTTTGTCCTCCCTTCACTCTCAATCGGTGCCGCTGCAGAAAG
AGCTCAAGAGGCCGATGCTCATCCCGCCGTCGGATTTCGGACCGAAGCTG
AAGGACACCGTACGGTAAACAAACGCACAGCTGAGGCGGTCCAACTGCCA
TACTTGGAACAAGTTAGTTTTCCTATTTTATCGGTTTCTGTGGCAACAGT
TTTGCTCAGCTATAGCTGCGAATAATCATGCTGAGTGCAGCTATCCCACT
CGCGGTTCACGCGCCTGCTTTTGTACCACGCCTCCATGAAACGCTTTCCC
ATTCGCCACTACGCATGCTCGATACACAAAACAATACCCCGCCGCAGATG
AACCACGCTGCTGCTTATGCCACCACCGCGTACGGTCCGGTAGCATTTAT
ATCGTCTATCCCGGTGGCTTCTTGATCTCCCTCTGTCGCCCCCTTCTCTG
TTCTAATTTCGCCGATAGGCATACGCAGACTTGATTATGGTTGGGCTACA
TCTCCTCAGCATGACCTCGGTACGAGTATAAAAAATCATGTACGGTATAT
CGTGACACCCCCACACACTCCCGTCCCTCTCGTGCGCATGCGCCCCGTCG
TTTGTTTCAGGCGAAAGCTCATCGAAGAGGTGGAAGGAACATCCGTGGGA
AACCTAGGTTTCGTCATCACGGTGACCGAGGTATGTTGTGAATTTTATTT
TCTGCAGACCCAGTTTGTGTACATACAATATCATGTTGGCGCAATACATG
TAAACGATATATTACTTGTGTCAACTTTGTTCCTGGCGCATGGTCTGTCT
GTCGCTGTGCTTTCTGGACACGAAGCGAGAGAGCGTGCGCCCCTTTGACA
GAATTCCAACCTACTTCGTTTGTTTCTTCAGGTGCCCGATTTTGTCCGGC
CGATATTAGTCGCCGCCAAACTGCCGTATGTTGATCCTGTGCCTTCCGAA
AACTGGAGTAGCGCTTACTGTATGTAGCAATATCGGGTGATATTTTTTAC
CGTTCTTCTGGCTAAACGCAGCGTGTGCATTCACGGCCGATTTTCGGAGG
TGGTCGGCTTGGTGCCCGCTACTGCTGTTAAGTAGGTGCCGCTCGCGTCT
CAGCGCATACAGAGTGCATGCTTGACCTGTCGGCGTTGTCGCTATACGGA
GCGGGGCGACTACCGTGTTCCCTACTGACTGCCCTGTATGTCCAAGTGCC
GGGACAGGATGTACTGTTGCTCTCACATCTTTGCTGGGTCAGCTGGTGAG
TTGGTCTCGTGTGGTACGCCCAGTCGCCCTGTCTGTACCCTCAAACGTCA
TTCTCTCGCGCGCTCGCTCCGTTGCTCGCATGCTTCCTTCTTTTGCGTGC
GTATGTGTGTTGATGTTTTTTATTTCAGGTGACAGACGAGCACATTACTC
TGGGGACGATCGAGTTTGACACAGGCTTCGTCAACGTGGTGGCGGTCTAC
CGCGCTATCTGCTTCCGTCCTTTCGTGAACGAGGTGTTGGACGCGGCTGT
GAGCCATGTGACAGAGCTAGGATTCTTCGCGGAAGTGGGTCCACTCGAGG
TCTTCGTCTCTCGATTGGTGAGTATTCGATCGTTGCTACGAGGTTGGTTC
GTTCCCGTGGGATGCTAGAAGCGCTGGATCTTCCCTAAAGGTCATCATGA
AAGCTTCTGCCACATGCCTGGCTCAAGAGTCAATATTTGCAACTGATTTA
TAGCTTTCAGTTTATCATGTGTTGGGGTCTTTTGAGCGCTTTGCCTACAA
ATTAAATAAGGCCAGAAGCCCGTATCCCAAGTACGTGTTCAACCCCGCTT
TCCTTCGGCGGAATGCATATCGTTTTCGAAATTTTTCGCCTCGTACGTGT
GTGGTAAAATCAAGGGAATGCCGGACGAGATTGCGGGCGGCTACGATGCA
GTGGGCGATATGTGGGTATCCTCCGAGGACTCAGACACGGAGATTAAGGC
GGGGTGCGGGGTGCGCTTGCGCATCATCGGAGTAACCGTGGGAGCCGAAC
TGGTGCGCAAATTTGAACATAGTCCGGTGTTTTCTGGCAGGGCGGGGCTG
GTGTCTGGACCTGGTGAGGGAGGGTTAGTATTATAGATAAATTTATCATA
AATATACTACTGGGGTAGTTTTGCAGCTGAGATTTCATTGTCTCCTACAA
TGCGGAGTTGATATCAACAGGCACGTGGAGTATATCGGAATTTGGAAGCT
GGCGTTCGGTTGTTTGTACGAAATTGGGGGGCGTTTGAAATGTCCGTTAT
TGGTGCAACAGCACTACAATGAAATGTGGTGCAGGTTGTTTTCGCGTTAG
CTTGGCCGGTTTTGATCTCATTCTGGGCACAATTTTGTCCTGCAGTCGCT
CCTATAAACGAGTGATGCATACTGAGGGCGTCGCCATTGACTTCACATAT
CCACTCGCCATATTACAGCGGATGGTCACCGTTGTTGTTTGTATACCACT
GCTGCCGGCCCTCGGGATACCGATACCAATGCTTGGCGCGTGGCACCCCT
CCCCCCCGCCGCTTCCCTCCCTCCCTCTCCCTCTCTCTTTCTCTCTCTCT
CTATATATATATTTACGGTTCTAATGCTGCAAATTTTGTTATCAAAGTAA
TGGGCACTTGTATTAATCATTCATATAAATCGAGATGCACGTAACAAAAT
TGATGGATTGCTGTGATACCACTTTGCCGACTTTGTTTCAAGATTGTTAT
GTCCTGGTCTCATACGACATGCCAATCGCCCAAACAGCACTCCCTCCGGG
TAGCTACTGTTCAGCTGAGAAATGTTTGCAGATGTAAAGTTCAATACATC
TTGGTGAGTAATGTGTCAAGCTGGGTGAGAACACCCCCCGAGTGTGATCA
AATGGTCGATAAGTAATCGAGCAGCTTGGATATGCTGAGCATAAATCCAT
TCTGCTCTACGGTTATTGTCATGTTTTCTACAGTAATCCCTCTCCCCCGC
TCCCTGATTTGGTCGGTTCGTGGAATCGGTCATCCAGCAGCTTGAATTTT
GACAAAATATTCTTCCCTTTTTGATTTTCTGTCACTTCCCCTCCTTGATG
CTGTCGACGCAATGCGAGCAGAAAGCTGTCGGGAGCATCAAGGACGATTT
CCTTGGACTCGTGTCTGGGCCTGTATAGCGACGGGAGTGTTCAGCACGCG
GTGGTAGTGTTATTAGTACTGTAGTTATTTTTTTGTCCATAAGAGTATGG
TTTTTGCTGTCCGATTGGTCCTGTGAAGACCGTAGAACGGCGTTAACCCG
CTTACCTTCCTTTTGGAGATGCTGTAGAAACAACTTTTTTTTGTTTTTGT
TTCGGAACGCCTGGGGCGGGCGGGAAATCAGAACAAGAGGAGGCGGAGGG
AGCAAAGCGAGTGAAAAAGTGGCCCAGCATCAGGCTATTCCAGGTAGTAA
TTTTCGCCGCCCACGCGCGCTGCGGATTGGGTTACGGGCGATCGACCAGG
ACTTGTTTTGGGGAATTGATGCTGGAAGCACTGCTCCCGCGTGTAGATCG
GGAAAATACGTTGTGGGTACGTTCCTGACGCAGCGCCTGTTGTATATCAA
GTGGGCCATGAGAGGAGCGCACACTTGTTCTCCAACATGCGCACTTTACT
GTGGTTACTGCGCGGCCGCCGCTCGTGAAGCGCCGCATTCGGGTCGCCAC
CACCTATAATAATTGTGTGTCACTTTTGCTTCGGAGCTGTATTTATCTGT
GGTTATTTTCATTTCCCGATTTATTTTCAGGCTGTTGGCATTGATGAGAG
GTAAATTTAACATAAGTATCTCCTTCTGTCGCAGATGGTGTATTGTCGGG
TGACCTCTGTGGAGTCGGCAAGGGTTGGACCACCCACTGGATGGTTGACA
ATGTGTATGCAGGCCTTCCGAAAGAAATTGTGATATTACATATCATGCTG
TCAGTGTCCCAGTCGGATTGCGCATTGCGCTTCGCCAAGTTCAAAGGAAG
GTTTTTTACCAAACTTGACCTCTTCAATCCCGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig4738:3028..8011+

>mRNA_H-paniculata_contig4738.11771.1 ID=mRNA_H-paniculata_contig4738.11771.1|Name=mRNA_H-paniculata_contig4738.11771.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1248bp|location=Sequence derived from alignment at H-paniculata_contig4738:3028..8011+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCTATCTCATGTTCTATCTCAAAGAGCTCAAGAGGCCGATGCTCAT
CCCGCCGTCGGATTTCGGACCGAAGCTGAAGGACACCGTACGAAAGAGCT
CAAGAGGCCGATGCTCATCCCGCCGTCGGATTTCGGACCGAAGCTGAAGG
ACACCGTACGGCGAAAGCTCATCGAAGAGGTGGAAGGAACATCCGTGGGA
AACCTAGGTTTCGTCATCACGGTGACCGAGGCGAAAGCTCATCGAAGAGG
TGGAAGGAACATCCGTGGGAAACCTAGGTTTCGTCATCACGGTGACCGAG
GTGACAGACGAGCACATTACTCTGGGGACGATCGAGTTTGACACAGGCTT
CGTCAACGTGGTGGCGGTCTACCGCGCTATCTGCTTCCGTCCTTTCGTGA
ACGAGGTGTTGGACGCGGCTGTGAGCCATGTGACAGAGCTAGGATTCTTC
GCGGAAGTGGGTCCACTCGAGGTCTTCGTCTCTCGATTGGTGACAGACGA
GCACATTACTCTGGGGACGATCGAGTTTGACACAGGCTTCGTCAACGTGG
TGGCGGTCTACCGCGCTATCTGCTTCCGTCCTTTCGTGAACGAGGTGTTG
GACGCGGCTGTGAGCCATGTGACAGAGCTAGGATTCTTCGCGGAAGTGGG
TCCACTCGAGGTCTTCGTCTCTCGATTGGGAATGCCGGACGAGATTGCGG
GCGGCTACGATGCAGTGGGCGATATGTGGGTATCCTCCGAGGACTCAGAC
ACGGAGATTAAGGCGGGGTGCGGGGTGCGCTTGCGCATCATCGGAGTAAC
CGTGGGAGCCGAACTGGTGCGCAAATTTGAACATAGTCCGGTGTTTTCTG
GCAGGGCGGGGCTGGTGTCTGGACCTGGGAATGCCGGACGAGATTGCGGG
CGGCTACGATGCAGTGGGCGATATGTGGGTATCCTCCGAGGACTCAGACA
CGGAGATTAAGGCGGGGTGCGGGGTGCGCTTGCGCATCATCGGAGTAACC
GTGGGAGCCGAACTGGTGCGCAAATTTGAACATAGTCCGGTGTTTTCTGG
CAGGGCGGGGCTGGTGTCTGGACCTGAAAGCTGTCGGGAGCATCAAGGAC
GATTTCCTTGGACTCGTGTCTGGGCCTGTATAGCGACGGGAGTGTTCAGC
ACGCGGTGGTAGAAAGCTGTCGGGAGCATCAAGGACGATTTCCTTGGACT
CGTGTCTGGGCCTGTATAGCGACGGGAGTGTTCAGCACGCGGTGGTAG
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