mRNA_H-paniculata_contig4737.11769.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4737.11769.1
Unique NamemRNA_H-paniculata_contig4737.11769.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4737.11769.1 vs. uniprot
Match: D8LAW5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAW5_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 7.320e-35
Identity = 80/151 (52.98%), Postives = 98/151 (64.90%), Query Frame = 1 
Query:    1 QAVPLQTTITYGDNKDSTSLVKETQPLWNFWTQMPDQGGTEKMRFSLTERHETSGQIFVRGEAVLDLSKYRQVGKSFELWEQLVAPKA-GVWAGF--AAKPA---LELHLTITYCASHDGLLAGEVGEDTDCQIWTT-----LGKLDCVIS 420
            Q +PLQ TITYGD K ST LV+  QPLWNFWTQ+PD+GG+E M FSL  R  ++G+I V GEA LDLSK+R+ G+SFELWE L   KA GV      +A+PA    E+HLTITYC +       + GEDTDC +  T     L +  C IS
Sbjct:   27 QELPLQITITYGDEKVSTPLVRARQPLWNFWTQLPDKGGSEGMVFSLVGRDSSTGKISVEGEARLDLSKFRRSGQSFELWETLHPTKARGVLPMVVKSARPADSTAEVHLTITYCPNTQKKDIPD-GEDTDCLMCATFATFGLSRGSCSIS 176
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4737.11769.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LAW5_ECTSI7.320e-3552.98Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4737contigH-paniculata_contig4737:12097..15165 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_006190.1
Exons3
Model size814
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4737.11769.1prot_H-paniculata_contig4737.11769.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4737 12488..15066 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930407.5198283-UTR-H-paniculata_contig4737:12096..124871622930407.5198283-UTR-H-paniculata_contig4737:12096..12487Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4737 12097..12487 -
1691481277.950414-UTR-H-paniculata_contig4737:12096..124871691481277.950414-UTR-H-paniculata_contig4737:12096..12487Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4737 12097..12487 -
1622930407.5798903-UTR-H-paniculata_contig4737:15066..151651622930407.5798903-UTR-H-paniculata_contig4737:15066..15165Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4737 15067..15165 -
1691481278.0087445-UTR-H-paniculata_contig4737:15066..151651691481278.0087445-UTR-H-paniculata_contig4737:15066..15165Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4737 15067..15165 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930407.5325308-CDS-H-paniculata_contig4737:12487..125591622930407.5325308-CDS-H-paniculata_contig4737:12487..12559Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4737 12488..12559 -
1691481277.972091-CDS-H-paniculata_contig4737:12487..125591691481277.972091-CDS-H-paniculata_contig4737:12487..12559Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4737 12488..12559 -
1622930407.547655-CDS-H-paniculata_contig4737:13931..141121622930407.547655-CDS-H-paniculata_contig4737:13931..14112Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4737 13932..14112 -
1691481277.9868608-CDS-H-paniculata_contig4737:13931..141121691481277.9868608-CDS-H-paniculata_contig4737:13931..14112Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4737 13932..14112 -
1622930407.563447-CDS-H-paniculata_contig4737:14995..150661622930407.563447-CDS-H-paniculata_contig4737:14995..15066Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4737 14996..15066 -
1691481277.9976795-CDS-H-paniculata_contig4737:14995..150661691481277.9976795-CDS-H-paniculata_contig4737:14995..15066Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4737 14996..15066 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4737.11769.1

>prot_H-paniculata_contig4737.11769.1 ID=prot_H-paniculata_contig4737.11769.1|Name=mRNA_H-paniculata_contig4737.11769.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp
MPDQGGTEKMRFSLTERHETSGQIFVRGEAVLDLSKYRQVGKSFELWEQL
VAPKAGVWAGFAAKPALELHLTITYCASHDGLLAGEVGEDTDCQIWTTLG
KLDCVIS*
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mRNA from alignment at H-paniculata_contig4737:12097..15165-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4737.11769.1 ID=mRNA_H-paniculata_contig4737.11769.1|Name=mRNA_H-paniculata_contig4737.11769.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3069bp|location=Sequence derived from alignment at H-paniculata_contig4737:12097..15165- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCCGTGCCACTACAGACGACGATCACATACGGAGACAACAAGGACTC
AACGTCTCTCGTGAAGGAAACGCAGCCGCTTTGGAACTTTTGGACGCAGA
TGCCAGACCAAGGGGGAACGGAGAAGATGCGGTTCTCGCTGACCGAACGG
CACGAAACGAGTGGCCAAATGTGCGTGTTGATTTGGTGTATGGGGGGGGC
TGGTGTGGGAAGGAGTACTATCTGTTGTGTCGAAGGGAGGGAGAGCGAGG
GAGGGAGGCGAGGGAAGGACGGATACGATAAAATTTAGAGGCACACGCGG
GTGCTAGGATTTATTGCACTGGCCGGAAGGGCAATAACGTGTGGAGTATA
GCATAATCTATCCGCCGGGGAGTACAACCGTGTCACTCGTTTGTATGACG
TGAGTAGGCGTACCATGACCTTGTAATGACCACTGACTTGGCACGAATGA
ATGCTTGACTTGCGAAGTCTCACCGAACGGTAAAGCTGTCTCATAATTTG
TTATTATCTCTCTACCGTACTTGTCGTATACACACGAATCATGCTGGGGT
TGTGTACCCCACAATTGTGGCTACATGTGCCGAAGAGTGAAGCTTTAACT
ACGTGGGGGAGGGGGCAGCGTAGCCCGTGCACAGGGCCAATCTAGGAGAC
ATTCAGAGGTTAGGAGTTTTTCAGTGGATGAGAGTTTGACTCATCTCCCA
TAGTTCCTGTGTGGCTGATCGTGGATGCGTTGGGGCCTACCTTAGGTGAT
TGCTCACGATGGATGATAACGCACGCCATTTTCGAGTATTCGTTGGATTC
ATTGGTATCGTGATTTGCAAACCGGCCGGGCGAGAACTGGCGTGCGAAAG
AAGGCCTTCGCGTTTGCAAGTATCCCAAATTTTTGTTTGTACCTTGTACC
CTTGGTCTCCTGGGAACCTTTAAGTACATATATATTCTCGAACGCCGCGT
ACACGTATCCGCACCACTGTTTGGACAATAACTAGGTTACAAAATTGATT
TATTGCTGTTCAATACTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCGGTG
CAGATTCGTGAGGGGAGAAGCCGTGCTAGACCTCAGTAAGTACCGACAAG
TCGGCAAGAGTTTCGAGCTGTGGGAGCAGTTGGTGGCGCCCAAGGCGGGG
GTGTGGGCAGGGTTCGCTGCGAAGCCGGCGCTAGAGTTACACCTGACCAT
CACATACTGCGCCTCCCACGACGGATTGCTCGCCGTGAGATGAAACAGCA
TTGTTGCGAATCCATTTTTTTTTTTTTTTTTTCGGTTTCTATGGTTTTCA
CTTGCGCTTTAACATGCCGTTGAGGATGAGCCCATATATGAATAGGAGTA
ATTACACCTTTTTTTGGTCGAATAAGACGGGTTCCCATCGAGCACATCGT
GGAACGCATGACATACGTCATACTCCCTTCCCCGCCCCCATTCCACTCCT
CCCCCACATTTTGTGTTCAATCGGTATGTGAAATCCGTCACTCAGCAATA
GGACATTGACTGGAAACGCCACCAGTTCTGATTGGTGATGATTGTTATTC
TGCACGTTTTTTATTTGTCGTTGTATATGTTTCAAACCGTGTTCTGTCTC
TCCCCCCCCCTCCCTTACCTTAACTCCTTTGCTTCTTTCAACTTTGGCAA
AATTTTTGAAGATGGAATTTTTGATATTATCTTGAAAATTTGTATTGTTG
GACATCGTAATATATATATTTTTATCTAACTTCTCTAATTCCGATATGTT
GTTTTATCCTTTCTTTATCTAATGGTATATATCTCAACTGAAAAAAAATG
GGAACCCCTATTTTCGAGCATGTAAAGTTTTTCCACCAACCCAAAACCAA
AATCCTGTGAAGTCACGCTATGAGTGAAATTTGGCACACTGATGGGCAGA
AATTAATATGTTGGTCTCGCCCTGTTAGCCCCTCCCACGCCAATTGGTCA
TTATCCATTGATGGTCCTCCTTATCCATGCCCGTAAATTCTCATCCCCTG
AGCGAACACGAACCATTTACTTTGAAATGTTCGCAACGAAATCTCGAAAA
TGTTCACCTGAATTTCAGAATGTGCGGGGACACATTGAATAAAGTGTTGT
TGACCCCTTGTTGAATTCGTTCTAATATCGTTGCGAGCAGTCGTGGATTC
ATGGTCTAGGCCTTATAGGATAGTCGTATTCATCATGCTGAACCTGAAGG
TGAATACTTTTCAATATTTCGTCGTTAGTGCTCGAAGTGTTCCTACTTGT
CATTACCCGCGGAGGTTCCGAGAAAGATTTACATTTGATCTATATCTATA
ATAACTCCCGCGGTGAATATCCCAACTTACTGGCCTCCGTTGCGGTTGAA
CCTCGCAAAATGAGATGACCCCCTATTTTTTAGGTCCCGTGATGGATGCT
TATCCATGTTATTTCTTATGTTTTGGGCTTTTGATAGAAGAGCGGCCTAT
CGTTTTTGCTGAAACACGAGTGCCTTCTTGTGTGATGGATATATGAGCCG
CCTACGAAGAGAGGGCATTCTGGCAAGATTCAATAATAAATCACGTTTTT
TTTTTGTTTTTTTTTCCGTCCGCGCTGTCCCTACCCACGCTGTCGATAAT
CTGCAGGGGGAAGTAGGCGAGGATACAGACTGCCAGATCTGGACGACATT
GGGCAAGCTCGATTGCGTCATCTCATGAATTCCGATGAAACTGCTCACCC
ACGGACAAAACCTCCACCCTCCACCCCCCTACCCCAACCCCCAAGCCGGA
ATCCACCCGTCCACACTCGAACCCCGGATTGTCAGTAATGCAGTTGATAA
TTCTTGCGCAATTGTCGTTGTGTTTTATGTTGAAGCTTTTTTTGGTCTTG
CGTTGGCTTTGTCCGTTGAGCTCTTGTATCATTTCCATTTTTTCTTGTTT
TGAAGGGCATTCGCGTCGTTACTACAAATGCTTTTTGAGGAGTTTGAGCG
TTTTTCTTTTGGTTTTACGGATCTGCAGAAAAGGCGACGGAAACACAAAT
CCCAATTAAATACCAGGATGTACAGTGGTAAATAAGGAATTGCCGGTAGG
CGGGGACTTTTTGAAACGT
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Coding sequence (CDS) from alignment at H-paniculata_contig4737:12097..15165-

>mRNA_H-paniculata_contig4737.11769.1 ID=mRNA_H-paniculata_contig4737.11769.1|Name=mRNA_H-paniculata_contig4737.11769.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at H-paniculata_contig4737:12097..15165- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCAGACCAAGGGGGAACGGAGAAGATGCGGTTCTCGCTGACCGAACG
GCACGAAACGAGTGGCCAAATATGCCAGACCAAGGGGGAACGGAGAAGAT
GCGGTTCTCGCTGACCGAACGGCACGAAACGAGTGGCCAAATATTCGTGA
GGGGAGAAGCCGTGCTAGACCTCAGTAAGTACCGACAAGTCGGCAAGAGT
TTCGAGCTGTGGGAGCAGTTGGTGGCGCCCAAGGCGGGGGTGTGGGCAGG
GTTCGCTGCGAAGCCGGCGCTAGAGTTACACCTGACCATCACATACTGCG
CCTCCCACGACGGATTGCTCGCCATTCGTGAGGGGAGAAGCCGTGCTAGA
CCTCAGTAAGTACCGACAAGTCGGCAAGAGTTTCGAGCTGTGGGAGCAGT
TGGTGGCGCCCAAGGCGGGGGTGTGGGCAGGGTTCGCTGCGAAGCCGGCG
CTAGAGTTACACCTGACCATCACATACTGCGCCTCCCACGACGGATTGCT
CGCCGGGGAAGTAGGCGAGGATACAGACTGCCAGATCTGGACGACATTGG
GCAAGCTCGATTGCGTCATCTCATGAGGGGAAGTAGGCGAGGATACAGAC
TGCCAGATCTGGACGACATTGGGCAAGCTCGATTGCGTCATCTCATGA
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