mRNA_H-paniculata_contig4736.11767.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4736.11767.1
Unique NamemRNA_H-paniculata_contig4736.11767.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4736.11767.1 vs. uniprot
Match: A0A6H5KRF0_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRF0_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.360e-7
Identity = 31/56 (55.36%), Postives = 39/56 (69.64%), Query Frame = 3 
Query:  267 ELYAEQLLMVKEEVFREFVNTNQTPIQHEIPMETTLEATRVKDARIFCHRQGEAAF 434
            +L +EQL  V+ EVF E  N +QTP+QHE+P+ETTLE T  KDARI    +GE  F
Sbjct:  311 DLTSEQLASVEAEVFEELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGEGELIF 366
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BLAST of mRNA_H-paniculata_contig4736.11767.1 vs. uniprot
Match: A0A6H5KJN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN9_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 5.880e-7
Identity = 33/60 (55.00%), Postives = 39/60 (65.00%), Query Frame = 3 
Query:  267 ELYAEQLLMVKEEVFREFVNTNQTPIQHEIPMETTLEATRVKDARIFC------HRQGEA 428
            +L +EQL  VK EVF E  N +QTP+QHE+P+ETTLE T  KDARI        H QG A
Sbjct:  223 DLTSEQLASVKAEVFEELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGFAAHHLQGHA 282
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BLAST of mRNA_H-paniculata_contig4736.11767.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.080e-6
Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 3 
Query:  267 ELYAEQLLMVKEEVFREFVNTNQTPIQHEIPMETTLEATRVKDARI 404
            +L +EQL  V+ EVF E  N +QTP+QHEIP+ETTLE T  KDARI
Sbjct:  100 DLTSEQLASVEAEVFEELGNMDQTPVQHEIPVETTLEKTGAKDARI 145
[Close]
BLAST of mRNA_H-paniculata_contig4736.11767.1 vs. uniprot
Match: A0A6H5L6D5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D5_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 2.090e-6
Identity = 28/56 (50.00%), Postives = 37/56 (66.07%), Query Frame = 3 
Query:  267 ELYAEQLLMVKEEVFREFVNTNQTPIQHEIPMETTLEATRVKDARIFCHRQGEAAF 434
            +L +EQL  V+ +VF E  N +QTP+QHE+P+E TLE    KDARI    +GE  F
Sbjct:  100 DLTSEQLASVEAKVFEELGNMDQTPVQHEMPVENTLEKAGAKDARISTGGEGELIF 155
[Close]
BLAST of mRNA_H-paniculata_contig4736.11767.1 vs. uniprot
Match: A0A6H5JFD9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFD9_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 2.500e-6
Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = 3 
Query:  267 ELYAEQLLMVKEEVFREFVNTNQTPIQHEIPMETTLEATRVKDARI 404
            +L +EQL  V+ EVF E  N +QTP+QHE+P+ETTLE T  KDARI
Sbjct:  267 DLTSEQLASVEAEVFEELGNMDQTPVQHEMPVETTLEKTGAKDARI 312
[Close]
BLAST of mRNA_H-paniculata_contig4736.11767.1 vs. uniprot
Match: A0A6H5KKC9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKC9_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 2.760e-6
Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = 3 
Query:  267 ELYAEQLLMVKEEVFREFVNTNQTPIQHEIPMETTLEATRVKDARI 404
            +L +EQL  V+ EVF E  N +QTP+QHE+P+ETTLE T  KDARI
Sbjct:  163 DLTSEQLASVEAEVFEELGNMDQTPVQHEMPVETTLEKTGAKDARI 208
[Close]
BLAST of mRNA_H-paniculata_contig4736.11767.1 vs. uniprot
Match: A0A6H5KRZ8_9PHAE (DDE-1 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ8_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 2.900e-6
Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = 3 
Query:  267 ELYAEQLLMVKEEVFREFVNTNQTPIQHEIPMETTLEATRVKDARI 404
            +L +EQL  V+ EVF E  N +QTP+QHE+P+ETTLE T  KDARI
Sbjct:  282 DLTSEQLASVEAEVFEELGNMDQTPVQHEMPVETTLEKTGAKDARI 327
[Close]
BLAST of mRNA_H-paniculata_contig4736.11767.1 vs. uniprot
Match: A0A6H5KFQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFQ9_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 3.270e-6
Identity = 28/46 (60.87%), Postives = 34/46 (73.91%), Query Frame = 3 
Query:  267 ELYAEQLLMVKEEVFREFVNTNQTPIQHEIPMETTLEATRVKDARI 404
            +L  EQL  V+ EVF E  N +QTP+QHE+P+ETTLE T  KDARI
Sbjct:  286 DLTCEQLASVEAEVFEELGNMDQTPVQHEMPVETTLEKTGAKDARI 331
[Close]
BLAST of mRNA_H-paniculata_contig4736.11767.1 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 3.570e-6
Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = 3 
Query:  267 ELYAEQLLMVKEEVFREFVNTNQTPIQHEIPMETTLEATRVKDARI 404
            +L  EQL  V+ EVF+E  N +QTP+QHE+P+ETTLE T  KDARI
Sbjct:  100 DLTFEQLASVEAEVFKELGNMDQTPVQHEMPVETTLEKTGAKDARI 145
[Close]
BLAST of mRNA_H-paniculata_contig4736.11767.1 vs. uniprot
Match: A0A6H5JXB6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXB6_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 3.600e-6
Identity = 28/56 (50.00%), Postives = 39/56 (69.64%), Query Frame = 3 
Query:  267 ELYAEQLLMVKEEVFREFVNTNQTPIQHEIPMETTLEATRVKDARIFCHRQGEAAF 434
            +L +EQL  V+ EV+ E  + +QTP+QHE+P+ETTLE T  KDARI    +GE  +
Sbjct:  220 DLTSEQLASVEAEVYEELGSIDQTPVQHEMPVETTLEKTGAKDARISTGDEGELIY 275
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4736.11767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A6H5KRF0_9PHAE1.360e-755.36DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KJN9_9PHAE5.880e-755.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6L9_9PHAE1.080e-663.04DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5L6D5_9PHAE2.090e-650.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFD9_9PHAE2.500e-660.87Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKC9_9PHAE2.760e-660.87DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KRZ8_9PHAE2.900e-660.87DDE-1 domain-containing protein n=3 Tax=Ectocarpus... [more]
A0A6H5KFQ9_9PHAE3.270e-660.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUK2_9PHAE3.570e-660.87DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JXB6_9PHAE3.600e-650.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4736contigH-paniculata_contig4736:4904..5751 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size474
Cds size201
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4736.11767.1prot_H-paniculata_contig4736.11767.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4736 5177..5738 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930407.2851622-UTR-H-paniculata_contig4736:4903..51441622930407.2851622-UTR-H-paniculata_contig4736:4903..5144Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4736 4904..5144 +
1691481277.8268476-UTR-H-paniculata_contig4736:4903..51441691481277.8268476-UTR-H-paniculata_contig4736:4903..5144Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4736 4904..5144 +
1622930407.3032408-UTR-H-paniculata_contig4736:5157..51761622930407.3032408-UTR-H-paniculata_contig4736:5157..5176Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4736 5158..5176 +
1691481277.838922-UTR-H-paniculata_contig4736:5157..51761691481277.838922-UTR-H-paniculata_contig4736:5157..5176Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4736 5158..5176 +
1622930407.3559692-UTR-H-paniculata_contig4736:5738..57511622930407.3559692-UTR-H-paniculata_contig4736:5738..5751Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4736 5739..5751 +
1691481277.8714383-UTR-H-paniculata_contig4736:5738..57511691481277.8714383-UTR-H-paniculata_contig4736:5738..5751Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4736 5739..5751 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930407.3219738-CDS-H-paniculata_contig4736:5176..53311622930407.3219738-CDS-H-paniculata_contig4736:5176..5331Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4736 5177..5331 +
1691481277.8510315-CDS-H-paniculata_contig4736:5176..53311691481277.8510315-CDS-H-paniculata_contig4736:5176..5331Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4736 5177..5331 +
1622930407.337834-CDS-H-paniculata_contig4736:5692..57381622930407.337834-CDS-H-paniculata_contig4736:5692..5738Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4736 5693..5738 +
1691481277.8627663-CDS-H-paniculata_contig4736:5692..57381691481277.8627663-CDS-H-paniculata_contig4736:5692..5738Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4736 5693..5738 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4736.11767.1

>prot_H-paniculata_contig4736.11767.1 ID=prot_H-paniculata_contig4736.11767.1|Name=mRNA_H-paniculata_contig4736.11767.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
MNELYAEQLLMVKEEVFREFVNTNQTPIQHEIPMETTLEATRVKDARIFC
HRQGEAAFYTFSRCDW*
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mRNA from alignment at H-paniculata_contig4736:4904..5751+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4736.11767.1 ID=mRNA_H-paniculata_contig4736.11767.1|Name=mRNA_H-paniculata_contig4736.11767.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=848bp|location=Sequence derived from alignment at H-paniculata_contig4736:4904..5751+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAGTCTTGAACAAGGTCTTCTAGCTTAAGCTCGATGCCTTCGGCGGGCT
GCCGAGTAGTGATGATGCTGTGAAGGTGGAGTACTTCAACAAGTTTGACA
AACGGCACGCCCGGTTTTGCAAGAACAGGTTGTCCATCCGTCGCCCCACC
AGCATCCGCCGACAGCTCCTGCCAGGCTATGAGGAGAAGCAGGCCGCCGA
GATGTACGCCAAGCGTTCAGCAGCCGCGCCGAGCGTCCAGGGTCAGAGCG
TGAGTCACGCTGTGAATGTGGACATGAACGAGCTATATGCTGAGCAGCTG
CTTATGGTAAAGGAAGAGGTGTTCCGCGAGTTCGTGAACACGAACCAAAC
CCCAATCCAGCACGAGATACCGATGGAGACCACGCTGGAGGCGACTAGGG
TAAAGGATGCGCGTATTTTTTGCCACAGGTAAGGTCGCCGAGTGTCCATA
CAGTACAGTACAGTACAGTACAGACAGTACCTGTGGTAGAATTGTCAGTT
TAATTGCCGAAAATGTTCGCAAGTTTACGGTGTGTATTTTGTTTTCTTGC
GTTTGAAGTACGGTGCTGTGCCGTAACGTACTGTACTAACCGTACAAATC
TGACTGATTACGGTAATTGAGTTAGTGCTCTGTAGACTGTTTGATGTACT
GCAGTACGCTGTGATGACTATGACTGTGCTGTGTGTTTTTCCTGTGTCGT
GCTTAAGATTCAAGAATAAGGACCATACTTGGATGACAGCAAAGTTAGTT
GACCATGCTTCGCTGCTCGTGCTTTCCCGACCTCCGCAGGCAAGGAGAAG
CAGCGTTTTACACTTTCTCTCGTTGTGACTGGTGATGGACGAAAGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig4736:4904..5751+

>mRNA_H-paniculata_contig4736.11767.1 ID=mRNA_H-paniculata_contig4736.11767.1|Name=mRNA_H-paniculata_contig4736.11767.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig4736:4904..5751+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACGAGCTATATGCTGAGCAGCTGCTTATGGTAAAGGAAGAGGTGTT
CCGCGAGTTCGTGAACACGAACCAAACCCCAATCCAGCACGAGATACCGA
TGGAGACCACGCTGGAGGCGACTAGGGTAAAGGATGCGCGTATTTTTTGC
CACAGATGAACGAGCTATATGCTGAGCAGCTGCTTATGGTAAAGGAAGAG
GTGTTCCGCGAGTTCGTGAACACGAACCAAACCCCAATCCAGCACGAGAT
ACCGATGGAGACCACGCTGGAGGCGACTAGGGTAAAGGATGCGCGTATTT
TTTGCCACAGGCAAGGAGAAGCAGCGTTTTACACTTTCTCTCGTTGTGAC
TGGTGAGCAAGGAGAAGCAGCGTTTTACACTTTCTCTCGTTGTGACTGGT
GA
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