mRNA_H-paniculata_contig4734.11765.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4734.11765.1
Unique NamemRNA_H-paniculata_contig4734.11765.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4734.11765.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.070e-15
Identity = 39/65 (60.00%), Postives = 46/65 (70.77%), Query Frame = -2
Query:    9 LKERMSWLGEEEVVVQQDGARPHTGKRMPRKLDLTGGEDELNIKLVTQPAQSPDLSINDLGLFVS 203
            +KE+M WL  + VVVQQDGA PHTGK  P  L+  G      ++LVTQPAQSPDL+INDLG F S
Sbjct:  283 IKEKMPWLRSKRVVVQQDGASPHTGKGNPEILNSAGIARGWLVELVTQPAQSPDLNINDLGCFAS 347          
BLAST of mRNA_H-paniculata_contig4734.11765.1 vs. uniprot
Match: A0A6G0X8U9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X8U9_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 7.360e-7
Identity = 29/53 (54.72%), Postives = 35/53 (66.04%), Query Frame = -2
Query:    9 VVVQQDGARPHTGKRMPRKLDLTGGEDELNIKLVTQPAQSPDLSINDLGLFVS 167
            + +QQDGARPH     P +L  +     LNIKLVTQPA SPDL+I DLG F +
Sbjct:  272 LYIQQDGARPHCTDGCP-ELVASAASFGLNIKLVTQPANSPDLNILDLGFFAA 323          
BLAST of mRNA_H-paniculata_contig4734.11765.1 vs. uniprot
Match: A0A7S2FC44_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FC44_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.120e-6
Identity = 26/53 (49.06%), Postives = 36/53 (67.92%), Query Frame = -2
Query:    9 VVVQQDGARPHTGKRMPRKLDLTGGEDELNIKLVTQPAQSPDLSINDLGLFVS 167
            + +QQDGA+PHT       L   G ++  ++K+ TQPAQSPDL++NDLG F S
Sbjct:   32 IWIQQDGAKPHTAAET--WLKGQGKKEGFDLKVTTQPAQSPDLNVNDLGFFRS 82          
BLAST of mRNA_H-paniculata_contig4734.11765.1 vs. uniprot
Match: UPI001ADC3EA5 (uncharacterized protein LOC107303866 isoform X1 n=2 Tax=Oryza brachyantha TaxID=4533 RepID=UPI001ADC3EA5)

HSP 1 Score: 52.8 bits (125), Expect = 8.140e-6
Identity = 30/68 (44.12%), Postives = 36/68 (52.94%), Query Frame = -2
Query:    9 LKERMSWLGEEE---VVVQQDGARPHTGKRMPRKLDLTGGEDELNIKLVTQPAQSPDLSINDLGLFVS 203
            L  R  W  E+    + +QQD ARPH      R       +D  NIKLV QPA SPDL++ DLG F S
Sbjct:  159 LAVRAKWPREDADKPIYIQQDNARPHIAPD-DRMFCEAAKQDNFNIKLVCQPANSPDLNVLDLGFFNS 225          
BLAST of mRNA_H-paniculata_contig4734.11765.1 vs. uniprot
Match: W2QDL4_PHYPN (Uncharacterized protein n=7 Tax=Phytophthora parasitica TaxID=4792 RepID=W2QDL4_PHYPN)

HSP 1 Score: 50.8 bits (120), Expect = 1.450e-5
Identity = 26/66 (39.39%), Postives = 37/66 (56.06%), Query Frame = -2
Query:    9 HLKERMSWLGEEEVVVQQDGARPHTGKRMPRKLDLTGGEDELNIKLVTQPAQSPDLSINDLGLFVS 206
            H+KE   W   + V +Q+D A+PH     P        ED  ++K+++QPA SPD + NDLG F S
Sbjct:   29 HIKE--VWPSSKRVALQRDNAKPHVAVDDPEVAAACSLED-WDMKIISQPANSPDFNANDLGFFNS 91          
BLAST of mRNA_H-paniculata_contig4734.11765.1 vs. uniprot
Match: UPI000B8AF499 (uncharacterized protein LOC110800263 n=1 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8AF499)

HSP 1 Score: 52.0 bits (123), Expect = 1.490e-5
Identity = 25/53 (47.17%), Postives = 34/53 (64.15%), Query Frame = -2
Query:   15 EEVVVQQDGARPHTGKRMPRKLDLTGGEDELNIKLVTQPAQSPDLSINDLGLF 173
            +++ +QQD ARPH      R+      +D  NI+LV QPAQSPD++I DLG F
Sbjct:  141 KDIWIQQDNARPHISPN-DREFLEAATQDGFNIRLVNQPAQSPDMNILDLGFF 192          
BLAST of mRNA_H-paniculata_contig4734.11765.1 vs. uniprot
Match: Q948A4_ORYSJ (Transposon protein, putative, Mariner sub-class, expressed n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q948A4_ORYSJ)

HSP 1 Score: 51.2 bits (121), Expect = 3.000e-5
Identity = 29/65 (44.62%), Postives = 35/65 (53.85%), Query Frame = -2
Query:    9 RMSWLGEEE---VVVQQDGARPHTGKRMPRKLDLTGGEDELNIKLVTQPAQSPDLSINDLGLFVS 194
            R  W  E+    + +QQD ARPH      R       +D  NIKLV QPA SPDL++ DLG F S
Sbjct:  292 RAKWPREDAGKPIYIQQDNARPHIAPD-DRMFCEAAKQDGFNIKLVCQPANSPDLNVLDLGFFNS 355          
BLAST of mRNA_H-paniculata_contig4734.11765.1 vs. uniprot
Match: UPI00053F7B42 (uncharacterized protein LOC104898721 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F7B42)

HSP 1 Score: 50.8 bits (120), Expect = 3.120e-5
Identity = 23/63 (36.51%), Postives = 39/63 (61.90%), Query Frame = -2
Query:   15 LKERMSWLGEEEVVVQQDGARPHTGKRMPRKLDLTGGEDELNIKLVTQPAQSPDLSINDLGLF 203
            ++E+    G +++ + QD ARPH       + +L   +D  +I+L+ QPAQSPD+++ DLG F
Sbjct:   62 IREKWPEDGCKQIWIVQDNARPHIASN-DAQFNLEAKKDGFDIRLINQPAQSPDMNVLDLGFF 123          
BLAST of mRNA_H-paniculata_contig4734.11765.1 vs. uniprot
Match: UPI000E1B95F2 (uncharacterized protein LOC107280909 n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=UPI000E1B95F2)

HSP 1 Score: 51.2 bits (121), Expect = 3.170e-5
Identity = 29/65 (44.62%), Postives = 35/65 (53.85%), Query Frame = -2
Query:    9 RMSWLGEEE---VVVQQDGARPHTGKRMPRKLDLTGGEDELNIKLVTQPAQSPDLSINDLGLFVS 194
            R  W  E+    + +QQD ARPH      R       +D  NIKLV QPA SPDL++ DLG F S
Sbjct:  495 RAKWPREDAGKPIYIQQDNARPHIAPD-DRMFCEAAKQDGFNIKLVCQPANSPDLNVLDLGFFNS 558          
BLAST of mRNA_H-paniculata_contig4734.11765.1 vs. uniprot
Match: W4FLW3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FLW3_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 3.980e-5
Identity = 26/65 (40.00%), Postives = 37/65 (56.92%), Query Frame = -2
Query:    9 LKERMSWLGEEEVVVQQDGARPHTGKRMPRKLDLTGGEDELNIKLVTQPAQSPDLSINDLGLFVS 203
            +KE       E + +QQD ARPH  +     + + G  D+ +I+LV QPA SPD ++ DLG F S
Sbjct:  277 IKEVWPGRRSEPIYIQQDNARPHV-EVDDADVTMAGCSDDWSIRLVAQPAMSPDFNVLDLGFFNS 340          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4734.11765.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5JIM0_9PHAE1.070e-1560.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6G0X8U9_9STRA7.360e-754.72Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7S2FC44_9STRA1.120e-649.06Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
UPI001ADC3EA58.140e-644.12uncharacterized protein LOC107303866 isoform X1 n=... [more]
W2QDL4_PHYPN1.450e-539.39Uncharacterized protein n=7 Tax=Phytophthora paras... [more]
UPI000B8AF4991.490e-547.17uncharacterized protein LOC110800263 n=1 Tax=Spina... [more]
Q948A4_ORYSJ3.000e-544.62Transposon protein, putative, Mariner sub-class, e... [more]
UPI00053F7B423.120e-536.51uncharacterized protein LOC104898721 n=1 Tax=Beta ... [more]
UPI000E1B95F23.170e-544.62uncharacterized protein LOC107280909 n=2 Tax=Oryza... [more]
W4FLW3_9STRA3.980e-540.00Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4734contigH-paniculata_contig4734:9643..9954 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size313
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930407.091628-CDS-H-paniculata_contig4734:9642..99541622930407.091628-CDS-H-paniculata_contig4734:9642..9954Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4734 9643..9954 +
1691481277.7497911-CDS-H-paniculata_contig4734:9642..99541691481277.7497911-CDS-H-paniculata_contig4734:9642..9954Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4734 9643..9954 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4734.11765.1prot_H-paniculata_contig4734.11765.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4734 9643..9954 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4734.11765.1

>prot_H-paniculata_contig4734.11765.1 ID=prot_H-paniculata_contig4734.11765.1|Name=mRNA_H-paniculata_contig4734.11765.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
RDEDTKRPKSLILRSGDCAGCVTSLIFNSSSPPVKSSFLGMRLPVCGRAP
SCCTTTSSSPNHDILSLRWRGKNLRVPLLVPLTVSGDVDVAVVTSFARSG
DPLG
back to top

mRNA from alignment at H-paniculata_contig4734:9643..9954+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4734.11765.1 ID=mRNA_H-paniculata_contig4734.11765.1|Name=mRNA_H-paniculata_contig4734.11765.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=312bp|location=Sequence derived from alignment at H-paniculata_contig4734:9643..9954+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGATGAAGATACGAAAAGACCCAAATCGTTGATACTGAGATCAGGAGA CTGCGCCGGCTGCGTTACAAGCTTGATATTCAATTCGTCCTCCCCCCCTG TCAAGTCTAGCTTCCTCGGCATGCGTTTGCCCGTGTGTGGGCGTGCGCCG TCCTGCTGCACGACCACTTCCTCCTCCCCCAACCATGACATCCTTTCCTT GAGGTGGAGAGGAAAAAACCTTCGTGTACCACTCCTGGTACCACTCACTG TCTCTGGTGACGTCGACGTCGCAGTCGTCACCTCTTTCGCGAGAAGCGGT GATCCGCTGGGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4734:9643..9954+

>mRNA_H-paniculata_contig4734.11765.1 ID=mRNA_H-paniculata_contig4734.11765.1|Name=mRNA_H-paniculata_contig4734.11765.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig4734:9643..9954+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGATGAAGATACGAAAAGACCCAAATCGTTGATACTGAGATCAGGAGA
CTGCGCCGGCTGCGTTACAAGCTTGATATTCAATTCGTCCTCCCCCCCTG
TCAAGTCTAGCTTCCTCGGCATGCGTTTGCCCGTGTGTGGGCGTGCGCCG
TCCTGCTGCACGACCACTTCCTCCTCCCCCAACCATGACATCCTTTCCTT
GAGGTGGAGAGGAAAAAACCTTCGTGTACCACTCCTGGTACCACTCACTG
TCTCTGGTGACGTCGACGTCGCAGTCGTCACCTCTTTCGCGAGAAGCGGT
GATCCGCTGGGCAGGGATGAAGATACGAAAAGACCCAAATCGTTGATACT
GAGATCAGGAGACTGCGCCGGCTGCGTTACAAGCTTGATATTCAATTCGT
CCTCCCCCCCTGTCAAGTCTAGCTTCCTCGGCATGCGTTTGCCCGTGTGT
GGGCGTGCGCCGTCCTGCTGCACGACCACTTCCTCCTCCCCCAACCATGA
CATCCTTTCCTTGAGGTGGAGAGGAAAAAACCTTCGTGTACCACTCCTGG
TACCACTCACTGTCTCTGGTGACGTCGACGTCGCAGTCGTCACCTCTTTC
GCGAGAAGCGGTGATCCGCTGGGC
back to top