mRNA_H-paniculata_contig4734.11765.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4734.11765.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 1.070e-15 Identity = 39/65 (60.00%), Postives = 46/65 (70.77%), Query Frame = -2
Query: 9 LKERMSWLGEEEVVVQQDGARPHTGKRMPRKLDLTGGEDELNIKLVTQPAQSPDLSINDLGLFVS 203
+KE+M WL + VVVQQDGA PHTGK P L+ G ++LVTQPAQSPDL+INDLG F S
Sbjct: 283 IKEKMPWLRSKRVVVQQDGASPHTGKGNPEILNSAGIARGWLVELVTQPAQSPDLNINDLGCFAS 347
BLAST of mRNA_H-paniculata_contig4734.11765.1 vs. uniprot
Match: A0A6G0X8U9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X8U9_9STRA) HSP 1 Score: 55.8 bits (133), Expect = 7.360e-7 Identity = 29/53 (54.72%), Postives = 35/53 (66.04%), Query Frame = -2
Query: 9 VVVQQDGARPHTGKRMPRKLDLTGGEDELNIKLVTQPAQSPDLSINDLGLFVS 167
+ +QQDGARPH P +L + LNIKLVTQPA SPDL+I DLG F +
Sbjct: 272 LYIQQDGARPHCTDGCP-ELVASAASFGLNIKLVTQPANSPDLNILDLGFFAA 323
BLAST of mRNA_H-paniculata_contig4734.11765.1 vs. uniprot
Match: A0A7S2FC44_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FC44_9STRA) HSP 1 Score: 54.7 bits (130), Expect = 1.120e-6 Identity = 26/53 (49.06%), Postives = 36/53 (67.92%), Query Frame = -2
Query: 9 VVVQQDGARPHTGKRMPRKLDLTGGEDELNIKLVTQPAQSPDLSINDLGLFVS 167
+ +QQDGA+PHT L G ++ ++K+ TQPAQSPDL++NDLG F S
Sbjct: 32 IWIQQDGAKPHTAAET--WLKGQGKKEGFDLKVTTQPAQSPDLNVNDLGFFRS 82
BLAST of mRNA_H-paniculata_contig4734.11765.1 vs. uniprot
Match: UPI001ADC3EA5 (uncharacterized protein LOC107303866 isoform X1 n=2 Tax=Oryza brachyantha TaxID=4533 RepID=UPI001ADC3EA5) HSP 1 Score: 52.8 bits (125), Expect = 8.140e-6 Identity = 30/68 (44.12%), Postives = 36/68 (52.94%), Query Frame = -2
Query: 9 LKERMSWLGEEE---VVVQQDGARPHTGKRMPRKLDLTGGEDELNIKLVTQPAQSPDLSINDLGLFVS 203
L R W E+ + +QQD ARPH R +D NIKLV QPA SPDL++ DLG F S
Sbjct: 159 LAVRAKWPREDADKPIYIQQDNARPHIAPD-DRMFCEAAKQDNFNIKLVCQPANSPDLNVLDLGFFNS 225
BLAST of mRNA_H-paniculata_contig4734.11765.1 vs. uniprot
Match: W2QDL4_PHYPN (Uncharacterized protein n=7 Tax=Phytophthora parasitica TaxID=4792 RepID=W2QDL4_PHYPN) HSP 1 Score: 50.8 bits (120), Expect = 1.450e-5 Identity = 26/66 (39.39%), Postives = 37/66 (56.06%), Query Frame = -2
Query: 9 HLKERMSWLGEEEVVVQQDGARPHTGKRMPRKLDLTGGEDELNIKLVTQPAQSPDLSINDLGLFVS 206
H+KE W + V +Q+D A+PH P ED ++K+++QPA SPD + NDLG F S
Sbjct: 29 HIKE--VWPSSKRVALQRDNAKPHVAVDDPEVAAACSLED-WDMKIISQPANSPDFNANDLGFFNS 91
BLAST of mRNA_H-paniculata_contig4734.11765.1 vs. uniprot
Match: UPI000B8AF499 (uncharacterized protein LOC110800263 n=1 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8AF499) HSP 1 Score: 52.0 bits (123), Expect = 1.490e-5 Identity = 25/53 (47.17%), Postives = 34/53 (64.15%), Query Frame = -2
Query: 15 EEVVVQQDGARPHTGKRMPRKLDLTGGEDELNIKLVTQPAQSPDLSINDLGLF 173
+++ +QQD ARPH R+ +D NI+LV QPAQSPD++I DLG F
Sbjct: 141 KDIWIQQDNARPHISPN-DREFLEAATQDGFNIRLVNQPAQSPDMNILDLGFF 192
BLAST of mRNA_H-paniculata_contig4734.11765.1 vs. uniprot
Match: Q948A4_ORYSJ (Transposon protein, putative, Mariner sub-class, expressed n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q948A4_ORYSJ) HSP 1 Score: 51.2 bits (121), Expect = 3.000e-5 Identity = 29/65 (44.62%), Postives = 35/65 (53.85%), Query Frame = -2
Query: 9 RMSWLGEEE---VVVQQDGARPHTGKRMPRKLDLTGGEDELNIKLVTQPAQSPDLSINDLGLFVS 194
R W E+ + +QQD ARPH R +D NIKLV QPA SPDL++ DLG F S
Sbjct: 292 RAKWPREDAGKPIYIQQDNARPHIAPD-DRMFCEAAKQDGFNIKLVCQPANSPDLNVLDLGFFNS 355
BLAST of mRNA_H-paniculata_contig4734.11765.1 vs. uniprot
Match: UPI00053F7B42 (uncharacterized protein LOC104898721 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F7B42) HSP 1 Score: 50.8 bits (120), Expect = 3.120e-5 Identity = 23/63 (36.51%), Postives = 39/63 (61.90%), Query Frame = -2
Query: 15 LKERMSWLGEEEVVVQQDGARPHTGKRMPRKLDLTGGEDELNIKLVTQPAQSPDLSINDLGLF 203
++E+ G +++ + QD ARPH + +L +D +I+L+ QPAQSPD+++ DLG F
Sbjct: 62 IREKWPEDGCKQIWIVQDNARPHIASN-DAQFNLEAKKDGFDIRLINQPAQSPDMNVLDLGFF 123
BLAST of mRNA_H-paniculata_contig4734.11765.1 vs. uniprot
Match: UPI000E1B95F2 (uncharacterized protein LOC107280909 n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=UPI000E1B95F2) HSP 1 Score: 51.2 bits (121), Expect = 3.170e-5 Identity = 29/65 (44.62%), Postives = 35/65 (53.85%), Query Frame = -2
Query: 9 RMSWLGEEE---VVVQQDGARPHTGKRMPRKLDLTGGEDELNIKLVTQPAQSPDLSINDLGLFVS 194
R W E+ + +QQD ARPH R +D NIKLV QPA SPDL++ DLG F S
Sbjct: 495 RAKWPREDAGKPIYIQQDNARPHIAPD-DRMFCEAAKQDGFNIKLVCQPANSPDLNVLDLGFFNS 558
BLAST of mRNA_H-paniculata_contig4734.11765.1 vs. uniprot
Match: W4FLW3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FLW3_9STRA) HSP 1 Score: 50.8 bits (120), Expect = 3.980e-5 Identity = 26/65 (40.00%), Postives = 37/65 (56.92%), Query Frame = -2
Query: 9 LKERMSWLGEEEVVVQQDGARPHTGKRMPRKLDLTGGEDELNIKLVTQPAQSPDLSINDLGLFVS 203
+KE E + +QQD ARPH + + + G D+ +I+LV QPA SPD ++ DLG F S
Sbjct: 277 IKEVWPGRRSEPIYIQQDNARPHV-EVDDADVTMAGCSDDWSIRLVAQPAMSPDFNVLDLGFFNS 340 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4734.11765.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4734.11765.1 >prot_H-paniculata_contig4734.11765.1 ID=prot_H-paniculata_contig4734.11765.1|Name=mRNA_H-paniculata_contig4734.11765.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp RDEDTKRPKSLILRSGDCAGCVTSLIFNSSSPPVKSSFLGMRLPVCGRAPback to top mRNA from alignment at H-paniculata_contig4734:9643..9954+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4734.11765.1 ID=mRNA_H-paniculata_contig4734.11765.1|Name=mRNA_H-paniculata_contig4734.11765.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=312bp|location=Sequence derived from alignment at H-paniculata_contig4734:9643..9954+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4734:9643..9954+ >mRNA_H-paniculata_contig4734.11765.1 ID=mRNA_H-paniculata_contig4734.11765.1|Name=mRNA_H-paniculata_contig4734.11765.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig4734:9643..9954+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |