mRNA_H-paniculata_contig4733.11763.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4733.11763.1
Unique NamemRNA_H-paniculata_contig4733.11763.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4733.11763.1 vs. uniprot
Match: A0A6H5K4H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4H7_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.460e-18
Identity = 56/123 (45.53%), Postives = 77/123 (62.60%), Query Frame = 3 
Query:    6 VHFRERRKRFGKVDEDNDGTFKCNFGSACEDRIHTVEEYPVYQNDREPYMNEVGKMEGCDGEAFESWAYEEEAIAVLEDRNKPEQAG---VEVDRVGERFSSRIWQRR*GKLAIGNRSDRNEA 365
            +  RERR+R   VD+++D  FKC+ G  CEDR+H V E P+Y+ + E Y+ E+GK +    E FE+W  EE  +AVL  R   E+AG   V +DR+G+ F S +WQ R   LAIG+RS  N A
Sbjct:  625 IGLRERRRRHWTVDDEDD-EFKCDCGFECEDRVHVVAECPLYKEESEVYVTELGKKKRTYREMFEAWNREERTVAVLGHRRWVEKAGRDVVRIDRLGKTFLSHLWQSRKKGLAIGDRSCGNNA 746
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BLAST of mRNA_H-paniculata_contig4733.11763.1 vs. uniprot
Match: A0A6H5JI54_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI54_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.010e-16
Identity = 53/123 (43.09%), Postives = 78/123 (63.41%), Query Frame = 3 
Query:    6 VHFRERRKRFGKVDEDNDGTFKCNFGSACEDRIHTVEEYPVYQNDREPYMNEVGKMEGCDGEAFESWAYEEEAIAVLEDRNKPEQAG--------VEVDRVGERFSSRIWQRR*GKLAIGNRS 350
            +  RERR+R   VD+++D  FKC+ GS CED +H V EY +Y+ +RE Y  E+ K+EG   E FE+W  E++ +AVL  R   ++AG        V +DR+G+ F + +WQ R  +LAIG+RS
Sbjct:  307 IGLRERRRRHRTVDDEDD-KFKCDCGSECEDGVHVVAEYQLYEKEREVYTTELVKVEGRYWEMFEAWNREKK-VAVLVHRRWFDKAGSYIGRIDIVRIDRLGKTFLNHLWQSRKERLAIGDRS 427
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BLAST of mRNA_H-paniculata_contig4733.11763.1 vs. uniprot
Match: A0A6H5KIT1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIT1_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.050e-9
Identity = 32/67 (47.76%), Postives = 47/67 (70.15%), Query Frame = 3 
Query:    6 VHFRERRKRFGKVDEDNDGTFKCNFGSACEDRIHTVEEYPVYQNDREPYMNEVGKMEGCDGEAFESW 206
            +  RERR+R   VD+++D  FKC+ G  CEDR+H V  YP+Y+N+ E Y+ E+GK++G   E FE+W
Sbjct:  357 IGLRERRRRHRTVDDEDD-EFKCDCGFECEDRVHVVAGYPLYKNEGEVYVTELGKIDGTYREMFEAW 422
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BLAST of mRNA_H-paniculata_contig4733.11763.1 vs. uniprot
Match: A0A6H5JII8_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JII8_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 2.050e-9
Identity = 31/59 (52.54%), Postives = 46/59 (77.97%), Query Frame = 2 
Query:  464 KVISAFATIVSNVYFGYSRDQTSSYHHDLAFILWICLSCLVLTVFLLYWDARYGGSRLN 640
            +V+SA   I+SNV+FGYS+D+TSSY  D+  ++ +C+ CL LT+ LL+WDA++G S LN
Sbjct:  481 EVLSAIGNILSNVFFGYSKDRTSSYKDDMIALVVVCVVCLALTLLLLFWDAKHGKSLLN 539
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BLAST of mRNA_H-paniculata_contig4733.11763.1 vs. uniprot
Match: D7FMB1_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMB1_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 2.430e-9
Identity = 31/59 (52.54%), Postives = 46/59 (77.97%), Query Frame = 2 
Query:  464 KVISAFATIVSNVYFGYSRDQTSSYHHDLAFILWICLSCLVLTVFLLYWDARYGGSRLN 640
            +V+SA   I+SNV+FGYS+D+TSSY  D+  ++ +C+ CL LT+ LL+WDA++G S LN
Sbjct:  351 EVLSAIGNILSNVFFGYSKDRTSSYKDDMVSLVVVCVVCLGLTLLLLFWDAKHGKSLLN 409
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BLAST of mRNA_H-paniculata_contig4733.11763.1 vs. uniprot
Match: A0A6H5JSX8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSX8_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 5.040e-7
Identity = 31/66 (46.97%), Postives = 44/66 (66.67%), Query Frame = 3 
Query:    6 VHFRERRKRFGKVDEDNDGTFKCNFGSACEDRIHTVEEYPVYQNDREPYMNEVGKMEGCDGEAFES 203
            +  RERR+R   VDE++D  FKC+ G  CEDR+H V E P+Y+ +RE Y+ E+GK+     E FE+
Sbjct:  720 IGLRERRRRHRTVDEEDD-EFKCDCGFECEDRVHVVAECPLYKEEREVYVTELGKIARTYKEMFEA 784
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4733.11763.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5K4H7_9PHAE1.460e-1845.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JI54_9PHAE1.010e-1643.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIT1_9PHAE1.050e-947.76Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JII8_9PHAE2.050e-952.54MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FMB1_ECTSI2.430e-952.54MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JSX8_9PHAE5.040e-746.97Reverse transcriptase domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4733contigH-paniculata_contig4733:4519..6642 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.6
Seed ortholog evalue2.5e-10
Seed eggNOG ortholog2880.D7FMB1
Preferred nameim:7160594
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.transmembrane transport
EggNOG OGsCOG0477@1,KOG4686@2759
COG Functional cat.EGP
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size2124
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4733.11763.1prot_H-paniculata_contig4733.11763.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4733 4907..5230 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930406.8140447-UTR-H-paniculata_contig4733:4518..49061622930406.8140447-UTR-H-paniculata_contig4733:4518..4906Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4733 4519..4906 +
1691481277.60889-UTR-H-paniculata_contig4733:4518..49061691481277.60889-UTR-H-paniculata_contig4733:4518..4906Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4733 4519..4906 +
1622930406.8490045-UTR-H-paniculata_contig4733:5230..66421622930406.8490045-UTR-H-paniculata_contig4733:5230..6642Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4733 5231..6642 +
1691481277.6363149-UTR-H-paniculata_contig4733:5230..66421691481277.6363149-UTR-H-paniculata_contig4733:5230..6642Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4733 5231..6642 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930406.834541-CDS-H-paniculata_contig4733:4906..52301622930406.834541-CDS-H-paniculata_contig4733:4906..5230Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4733 4907..5230 +
1691481277.6266992-CDS-H-paniculata_contig4733:4906..52301691481277.6266992-CDS-H-paniculata_contig4733:4906..5230Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4733 4907..5230 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4733.11763.1

>prot_H-paniculata_contig4733.11763.1 ID=prot_H-paniculata_contig4733.11763.1|Name=mRNA_H-paniculata_contig4733.11763.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp
MVQERRHAKHEYALFSSPLPFRSYLKVISAFATIVSNVYFGYSRDQTSSY
HHDLAFILWICLSCLVLTVFLLYWDARYGGSRLNLPRKDSAFMAIPSLPV
TNGQVTT*
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mRNA from alignment at H-paniculata_contig4733:4519..6642+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4733.11763.1 ID=mRNA_H-paniculata_contig4733.11763.1|Name=mRNA_H-paniculata_contig4733.11763.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2124bp|location=Sequence derived from alignment at H-paniculata_contig4733:4519..6642+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGTGTCCACTTCAGGGAACGTCGGAAGCGATTCGGGAAAGTAGACGAG
GACAACGACGGTACGTTCAAGTGTAACTTTGGTAGTGCGTGCGAGGACCG
AATTCACACGGTGGAAGAATACCCTGTGTATCAAAATGATAGAGAACCCT
ACATGAATGAAGTAGGGAAAATGGAAGGATGCGATGGAGAGGCATTCGAA
TCCTGGGCTTACGAAGAGGAAGCTATAGCGGTTCTAGAAGATCGCAATAA
GCCCGAACAGGCAGGGGTTGAGGTAGATAGGGTAGGTGAAAGATTTTCGA
GCCGTATTTGGCAACGTAGGTAAGGGAAATTGGCCATCGGAAATCGCTCT
GACAGGAACGAAGCAATCCTCCCAAAAACATATGGTCAATGGTCCAAGAA
CGACGGCATGCAAAACACGAGTACGCCCTCTTTTCCTCCCCCCTTCCCTT
CCGTTCGTATTTGAAGGTGATCAGTGCGTTCGCGACCATTGTGTCGAACG
TGTACTTCGGCTACTCTAGGGATCAAACGTCGTCCTATCACCACGACTTG
GCTTTTATCCTGTGGATATGCTTATCATGTCTGGTACTCACGGTGTTCCT
GCTGTACTGGGACGCGCGATATGGAGGTTCAAGGCTCAATCTTCCTAGAA
AAGATTCCGCTTTCATGGCGATACCGTCGTTACCAGTCACCAATGGTCAA
GTCACAACTTAACGACCGTATTGATGTATTTGATATACATTATTATGTAG
AATTTTTTCTACTGTTTCTTTTAATATTGTATCACAAGCGCGGCATCTTA
GTGTTGCTGACAGAAAATAAGCAGAGAAGTGTTGCGGAGAAGTAAATCGC
GTTTTTGCTCTATTTTGCTCCATTTTGTGCCACTGGTGTTTCCGGCAGTA
GGTCTTGTTGGATTCGACTACTGTTGGTGGTTGGGCGTATTGTGGCATGT
GTGTTGCGGGCGAAAACCGCAAATACTGTTTTACCGTGAACCACACCATA
ACGTACAGTACTTCTATGGAGTGGGTTTCATGTGCAGGAAGGCAGCTTAT
GTGCGCTACAATAACCGTCATCGTGTTGACGCATTGTGTGCATCATAAGC
TGGAACTTGGATGACTGTACGTGTAGACAATGAGACTGCTCTGTTGTCGT
GCTTGTGTCACATCAGTACTCGTCATTGGAAGGTGTGTATTTCTGTGACC
GAAATGTCTTTGCATGAGAACATCAGTTATCCCTGCCCAGGGCGCTGATA
ACATCTTGATTGGGATTTCACACCGTTGTGTTAGGGAGGAACGGCGCACG
AGAAAGTACACCCAAGAAATATGGCAAAAAAATGAAGAAATGCAAGTAGT
CAGGTGATGCCTTTTGGTATTGTACCTCATGCGACCCCCCAGCAGTCAGT
TGTGGCTATTTTTTCGTCCTGACACCAAGTGTTCCGTGTGCAGCATAGAT
GGTAGGCCATGTAGTTGCACCGCATCCAAGGTGCTCGTGTGGTTTGTCCC
TTCTGGAAGTAGTTGAAGTTGTCTATCTTCGCTTTTTGTGTTAGAACCGC
CCAGCGTGGTTTAAGGCCAAGGTCTGTGCCTCGGGGCGCAACGGGCAGCA
CGATGATCCGATCTTGGTGCGTGCTGTGTGAACGTAGTTGGTTGGAGCTT
ATAGAGCAGCTTGCAACTATAGTATTTTTTGCTGATATACATGTTTTCGT
GCTTTGTGAGAGATGGTTGTTCCGTAACCTCGCGTAGAGGATGGTAATAC
GGCCCATCATTACACATGTTCAACCCCCTCGTCAGCGTTCGTGAAATGGA
TAATATTTATAAGTAGAACATCAAGAAGGAGACCTTGGAGGCAAAATGGG
GATGACGTGGCTTCACGGTAAAGGGAAGCGAATTAAGTGGTTAACATGAT
GACCGTCGTTAAGTATTCCCGTCCATATCACTTGGAACTAGCCTGTGCAA
AACCATGATGTCTGGGCGAGGTTTAGCAGAGCGTCTAGACAAGAACAACG
ATGTCTGCTGTTCAGAAGAGTAGAATCGATGAGTACGCTGTGGAGAACAA
GAGGAGCTGAAAGAGGCGACACTGAAGGAGCGTTCAGATCTCGTACACGC
GAACAGAGAGGCCGGATGAAAGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig4733:4519..6642+

>mRNA_H-paniculata_contig4733.11763.1 ID=mRNA_H-paniculata_contig4733.11763.1|Name=mRNA_H-paniculata_contig4733.11763.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at H-paniculata_contig4733:4519..6642+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCCAAGAACGACGGCATGCAAAACACGAGTACGCCCTCTTTTCCTC
CCCCCTTCCCTTCCGTTCGTATTTGAAGGTGATCAGTGCGTTCGCGACCA
TTGTGTCGAACGTGTACTTCGGCTACTCTAGGGATCAAACGTCGTCCTAT
CACCACGACTTGGCTTTTATCCTGTGGATATGCTTATCATGTCTGGTACT
CACGGTGTTCCTGCTGTACTGGGACGCGCGATATGGAGGTTCAAGGCTCA
ATCTTCCTAGAAAAGATTCCGCTTTCATGGCGATACCGTCGTTACCAGTC
ACCAATGGTCAAGTCACAACTTAAATGGTCCAAGAACGACGGCATGCAAA
ACACGAGTACGCCCTCTTTTCCTCCCCCCTTCCCTTCCGTTCGTATTTGA
AGGTGATCAGTGCGTTCGCGACCATTGTGTCGAACGTGTACTTCGGCTAC
TCTAGGGATCAAACGTCGTCCTATCACCACGACTTGGCTTTTATCCTGTG
GATATGCTTATCATGTCTGGTACTCACGGTGTTCCTGCTGTACTGGGACG
CGCGATATGGAGGTTCAAGGCTCAATCTTCCTAGAAAAGATTCCGCTTTC
ATGGCGATACCGTCGTTACCAGTCACCAATGGTCAAGTCACAACTTAA
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