mRNA_H-paniculata_contig47316.11761.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig47316.11761.1
Unique NamemRNA_H-paniculata_contig47316.11761.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig47316.11761.1 vs. uniprot
Match: D1J788_ECTSI (DNA-directed RNA polymerase subunit beta' n=8 Tax=Ectocarpales TaxID=2877 RepID=D1J788_ECTSI)

HSP 1 Score: 607 bits (1564), Expect = 1.900e-214
Identity = 303/303 (100.00%), Postives = 303/303 (100.00%), Query Frame = 1 
Query:    1 RPEWMVLHFIPVLPPGIRPIVKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSVVVLTEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPHLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYSNEPFIWYLTEEILQKHPIILNRAPTLHRLGVQAFDPVLVRGRSIQLHPLVCSSFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSASSGEPTIQPSQDMVLGFYYLTTQNRTNLCGSNNYFSSFNEVI 909
            RPEWMVLHFIPVLPPGIRPIVKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSVVVLTEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPHLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYSNEPFIWYLTEEILQKHPIILNRAPTLHRLGVQAFDPVLVRGRSIQLHPLVCSSFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSASSGEPTIQPSQDMVLGFYYLTTQNRTNLCGSNNYFSSFNEVI
Sbjct:  230 RPEWMVLHFIPVLPPGIRPIVKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSVVVLTEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPHLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYSNEPFIWYLTEEILQKHPIILNRAPTLHRLGVQAFDPVLVRGRSIQLHPLVCSSFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSASSGEPTIQPSQDMVLGFYYLTTQNRTNLCGSNNYFSSFNEVI 532
[Close]
BLAST of mRNA_H-paniculata_contig47316.11761.1 vs. uniprot
Match: A0A6B7EVT1_9PHAE (DNA-directed RNA polymerase subunit gamma n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EVT1_9PHAE)

HSP 1 Score: 580 bits (1496), Expect = 4.040e-204
Identity = 288/303 (95.05%), Postives = 297/303 (98.02%), Query Frame = 1 
Query:    1 RPEWMVLHFIPVLPPGIRPIVKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSVVVLTEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPHLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYSNEPFIWYLTEEILQKHPIILNRAPTLHRLGVQAFDPVLVRGRSIQLHPLVCSSFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSASSGEPTIQPSQDMVLGFYYLTTQNRTNLCGSNNYFSSFNEVI 909
            RPEWMVL+F+PVLPPGIRPIVKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSVV+ TEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGP LKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIY NEPFIWYLTEEIL+KHPIILNRAPTLHRLGVQAFDPVL+RGR+IQLHPLVCSSFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLS SSGEPTIQPSQDMVLGFYYLTT+NR NL GSNNYF++FNEVI
Sbjct:  230 RPEWMVLYFLPVLPPGIRPIVKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSVVISTEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYGNEPFIWYLTEEILKKHPIILNRAPTLHRLGVQAFDPVLIRGRAIQLHPLVCSSFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSSGEPTIQPSQDMVLGFYYLTTRNRKNLRGSNNYFANFNEVI 532
[Close]
BLAST of mRNA_H-paniculata_contig47316.11761.1 vs. uniprot
Match: A0A0R6MFT6_UNDPI (DNA-directed RNA polymerase subunit beta' n=25 Tax=Laminariales TaxID=2886 RepID=A0A0R6MFT6_UNDPI)

HSP 1 Score: 570 bits (1468), Expect = 5.490e-200
Identity = 281/303 (92.74%), Postives = 294/303 (97.03%), Query Frame = 1 
Query:    1 RPEWMVLHFIPVLPPGIRPIVKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSVVVLTEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPHLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYSNEPFIWYLTEEILQKHPIILNRAPTLHRLGVQAFDPVLVRGRSIQLHPLVCSSFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSASSGEPTIQPSQDMVLGFYYLTTQNRTNLCGSNNYFSSFNEVI 909
            RPEWMVLHF+PVLPPGIRP+VKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSVV+LTEKRMIQEAVDTLIDNGKRGSK+LDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGP L+LNQCGLPYEMAIELFLPFIIY+LLSQGLSHSIK+AKKIIYSN+ FIWYLTEEIL+KHPIILNRAPTLHRLGVQAFDPVLVRGR+IQLHPLVC +FNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLS S+GEP IQPSQDMVLGFYYLT QNR  L GSNNYFS+FNEVI
Sbjct:  226 RPEWMVLHFLPVLPPGIRPMVKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSVVILTEKRMIQEAVDTLIDNGKRGSKVLDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLELNQCGLPYEMAIELFLPFIIYKLLSQGLSHSIKKAKKIIYSNQSFIWYLTEEILRKHPIILNRAPTLHRLGVQAFDPVLVRGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSTGEPNIQPSQDMVLGFYYLTAQNRMGLKGSNNYFSNFNEVI 528
[Close]
BLAST of mRNA_H-paniculata_contig47316.11761.1 vs. uniprot
Match: A0A8F0F9J3_9PHAE (DNA-directed RNA polymerase subunit gamma n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9J3_9PHAE)

HSP 1 Score: 562 bits (1449), Expect = 4.200e-197
Identity = 275/303 (90.76%), Postives = 292/303 (96.37%), Query Frame = 1 
Query:    1 RPEWMVLHFIPVLPPGIRPIVKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSVVVLTEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPHLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYSNEPFIWYLTEEILQKHPIILNRAPTLHRLGVQAFDPVLVRGRSIQLHPLVCSSFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSASSGEPTIQPSQDMVLGFYYLTTQNRTNLCGSNNYFSSFNEVI 909
            RPEW +LHF+PVLPPGIRP+VKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAP+VV+LTEKRMIQEAVDTLIDNGKRGSK+LDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGP L+LNQCGLPYEMAIELFLPF+IY+LLSQ LSHSIKRAKKIIYSN PFIW+LTEEIL+KHPIILNRAPTLHRLGVQAFDP+LVRGR+IQLHPLVC++FNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLS S+GEP IQPSQDMVLGFYYLT QNR  L G+NNYFS FNEVI
Sbjct:  226 RPEWTILHFLPVLPPGIRPMVKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPNVVILTEKRMIQEAVDTLIDNGKRGSKVLDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLELNQCGLPYEMAIELFLPFLIYKLLSQELSHSIKRAKKIIYSNRPFIWHLTEEILRKHPIILNRAPTLHRLGVQAFDPILVRGRAIQLHPLVCAAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSTGEPNIQPSQDMVLGFYYLTAQNRMQLKGANNYFSDFNEVI 528
[Close]
BLAST of mRNA_H-paniculata_contig47316.11761.1 vs. uniprot
Match: A0A141BSD2_9PHAE (DNA-directed RNA polymerase subunit beta' n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSD2_9PHAE)

HSP 1 Score: 551 bits (1421), Expect = 7.210e-193
Identity = 266/303 (87.79%), Postives = 292/303 (96.37%), Query Frame = 1 
Query:    1 RPEWMVLHFIPVLPPGIRPIVKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSVVVLTEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPHLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYSNEPFIWYLTEEILQKHPIILNRAPTLHRLGVQAFDPVLVRGRSIQLHPLVCSSFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSASSGEPTIQPSQDMVLGFYYLTTQNRTNLCGSNNYFSSFNEVI 909
            RPEWM+L F+PVLPPGIRP+VKL+NGRFATSDLNELYRKIIIRNKRLKRLLSVHAPS+V++TEKRMIQE+VDTLIDNGKRGSK++DAN+RPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGP L+LNQCGLPYEMAIELFLPFIIY+LLSQGL HSIK+AKKII+SN+PFIWYLT+EIL KHPIILNRAPTLHRLGVQAFDPVLV+GR+IQLHPLVC +FNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLS ++GEP IQPSQDM+LGFYYLTT NR  L G+NNYFSSF+EV+
Sbjct:  226 RPEWMILQFLPVLPPGIRPMVKLENGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSIVIITEKRMIQESVDTLIDNGKRGSKVVDANRRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPKLQLNQCGLPYEMAIELFLPFIIYKLLSQGLCHSIKKAKKIIHSNQPFIWYLTKEILSKHPIILNRAPTLHRLGVQAFDPVLVKGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPATGEPNIQPSQDMILGFYYLTTHNRLGLKGANNYFSSFHEVL 528
[Close]
BLAST of mRNA_H-paniculata_contig47316.11761.1 vs. uniprot
Match: D1GJH3_FUCVE (DNA-directed RNA polymerase subunit beta' n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJH3_FUCVE)

HSP 1 Score: 549 bits (1415), Expect = 6.480e-192
Identity = 266/303 (87.79%), Postives = 289/303 (95.38%), Query Frame = 1 
Query:    1 RPEWMVLHFIPVLPPGIRPIVKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSVVVLTEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPHLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYSNEPFIWYLTEEILQKHPIILNRAPTLHRLGVQAFDPVLVRGRSIQLHPLVCSSFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSASSGEPTIQPSQDMVLGFYYLTTQNRTNLCGSNNYFSSFNEVI 909
            RPEWM+L+F+PVLPPGIRP+V+LDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPS+V++TEKRMIQE+VDTLIDNGKRGSK++D N+RPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGP L LNQCGLPYEMAIELFLPFIIYRLLSQGL HSIK+AKKIIYSN+ FIWYLT+EIL KHPIILNRAPTLHRLGVQAFDP+LV GR+IQLHPLVC +FNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLS S+GEP IQPSQDMVLGFYYLT QNR  L G+NNYFS+F+EV+
Sbjct:  226 RPEWMILNFLPVLPPGIRPMVQLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSIVIMTEKRMIQESVDTLIDNGKRGSKVVDTNRRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPELHLNQCGLPYEMAIELFLPFIIYRLLSQGLCHSIKKAKKIIYSNQSFIWYLTKEILSKHPIILNRAPTLHRLGVQAFDPILVNGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSTGEPNIQPSQDMVLGFYYLTAQNRIGLKGTNNYFSNFHEVL 528
[Close]
BLAST of mRNA_H-paniculata_contig47316.11761.1 vs. uniprot
Match: A0A8F0JZT2_9PHAE (DNA-directed RNA polymerase subunit gamma n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0JZT2_9PHAE)

HSP 1 Score: 541 bits (1393), Expect = 1.050e-188
Identity = 262/303 (86.47%), Postives = 288/303 (95.05%), Query Frame = 1 
Query:    1 RPEWMVLHFIPVLPPGIRPIVKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSVVVLTEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPHLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYSNEPFIWYLTEEILQKHPIILNRAPTLHRLGVQAFDPVLVRGRSIQLHPLVCSSFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSASSGEPTIQPSQDMVLGFYYLTTQNRTNLCGSNNYFSSFNEVI 909
            RPEWM+L+F+PVLPPG+RP+VKLD+GRFATSDLNELYRKII+RNKRL RLLSVHAP++V+ TEKRMIQEAVDTLIDNGKRGSK+LDAN+RPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGP L+LNQCGLPYEMAIELFLPF+I++LL QGL++SIKRAKKIIYSN  FIWYLTEE L+KHPIILNRAPTLHRLGVQAFDPVLVRGR+IQLHPLVC +FNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLS S+GEP IQP+QDMVLGFYYLT  NR  L G+NNYFS+FNEV+
Sbjct:  219 RPEWMILNFLPVLPPGLRPMVKLDSGRFATSDLNELYRKIILRNKRLGRLLSVHAPNIVITTEKRMIQEAVDTLIDNGKRGSKVLDANRRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLQLNQCGLPYEMAIELFLPFLIHKLLFQGLANSIKRAKKIIYSNRSFIWYLTEETLKKHPIILNRAPTLHRLGVQAFDPVLVRGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSTGEPNIQPTQDMVLGFYYLTANNRMQLKGANNYFSNFNEVV 521
[Close]
BLAST of mRNA_H-paniculata_contig47316.11761.1 vs. uniprot
Match: A0A8F0JYE1_9PHAE (DNA-directed RNA polymerase subunit gamma n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JYE1_9PHAE)

HSP 1 Score: 506 bits (1304), Expect = 3.390e-175
Identity = 247/303 (81.52%), Postives = 278/303 (91.75%), Query Frame = 1 
Query:    1 RPEWMVLHFIPVLPPGIRPIVKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSVVVLTEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPHLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYSNEPFIWYLTEEILQKHPIILNRAPTLHRLGVQAFDPVLVRGRSIQLHPLVCSSFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSASSGEPTIQPSQDMVLGFYYLTTQNRTNLCGSNNYFSSFNEVI 909
            +PEWMVL+ +PVLPPGIRP++++ NGRFATSDLNELYRKIIIRN RL RL+SVHAP++++ TEKRMIQE+VD LIDNGKRG K+LD++KRPLKSLADIIEGKQGRFR NLLGKR DYSGRSVIIVGP L LNQCGLPYEMAIELFLPFII++LL QGL +SIK+AKKII+SN+ FIW+L +EIL +HPIILNRAPTLHRLGVQAFDPVLVRGR+IQLHPLVC +FNADFDGDQMAVHIPLSFESQLETRLCLLA NNFLS ++GE  I PSQDMVLGFYYLTTQNR  L G+NNYFS+FNEVI
Sbjct:  221 KPEWMVLNCLPVLPPGIRPMIQMANGRFATSDLNELYRKIIIRNNRLGRLISVHAPNMIIKTEKRMIQESVDALIDNGKRGEKVLDSHKRPLKSLADIIEGKQGRFRLNLLGKRTDYSGRSVIIVGPQLALNQCGLPYEMAIELFLPFIIHKLLFQGLVYSIKKAKKIIFSNDSFIWFLLKEILIQHPIILNRAPTLHRLGVQAFDPVLVRGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLATNNFLSPATGEANIHPSQDMVLGFYYLTTQNRMKLKGANNYFSNFNEVI 523
[Close]
BLAST of mRNA_H-paniculata_contig47316.11761.1 vs. uniprot
Match: A0A8E6D698_9PHAE (DNA-directed RNA polymerase subunit beta' n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D698_9PHAE)

HSP 1 Score: 505 bits (1300), Expect = 1.720e-174
Identity = 240/303 (79.21%), Postives = 282/303 (93.07%), Query Frame = 1 
Query:    1 RPEWMVLHFIPVLPPGIRPIVKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSVVVLTEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPHLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYSNEPFIWYLTEEILQKHPIILNRAPTLHRLGVQAFDPVLVRGRSIQLHPLVCSSFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSASSGEPTIQPSQDMVLGFYYLTTQNRTNLCGSNNYFSSFNEVI 909
            +PEWM+L+F+PV+PPG+RPI+KL+NGRFA+SDLNELYR+IIIRNKRL RL+SVHAPSVV+ TE RMIQE++DTLIDNGKRG+ ++D++KRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGP L+LNQCGLPYEMAIELFLPF++++L+ QGL++SI +AKKIIY+N+ FIW L +EIL +HP+ILNRAPTLHRLGVQAFD +LV GR+IQLHPLVC +FNADFDGDQMAVHIPLSFESQ+ETRLCLLAPNNFLS ++G+P IQP+QDMVLGFYYLT QN TNL GSN+YF SF EVI
Sbjct:  228 KPEWMLLYFLPVIPPGLRPIIKLENGRFASSDLNELYRRIIIRNKRLGRLMSVHAPSVVLNTETRMIQESIDTLIDNGKRGATVVDSHKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLELNQCGLPYEMAIELFLPFLMHKLIYQGLANSINKAKKIIYNNKSFIWGLLKEILGRHPVILNRAPTLHRLGVQAFDAILVTGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQIETRLCLLAPNNFLSPATGDPVIQPTQDMVLGFYYLTAQNHTNLKGSNHYFGSFEEVI 530
[Close]
BLAST of mRNA_H-paniculata_contig47316.11761.1 vs. uniprot
Match: A0A2I4Q2A7_9PHAE (DNA-directed RNA polymerase subunit beta' n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2A7_9PHAE)

HSP 1 Score: 495 bits (1275), Expect = 8.680e-171
Identity = 241/303 (79.54%), Postives = 271/303 (89.44%), Query Frame = 1 
Query:    1 RPEWMVLHFIPVLPPGIRPIVKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSVVVLTEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPHLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYSNEPFIWYLTEEILQKHPIILNRAPTLHRLGVQAFDPVLVRGRSIQLHPLVCSSFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSASSGEPTIQPSQDMVLGFYYLTTQNRTNLCGSNNYFSSFNEVI 909
            +PEWM+ + +PVLPPG+RPIV+LDNGR ATSDLNE YRKI+IR +RL RLLSV APS+++ TEKRMIQE+VD LIDNGKRG K+LD +KRPLKSLA++IEGKQGRFRQNLLGKRVDYSGRSVIIVGP L LNQCGLPYEMA+ELFLPF+I+++    L+ SIK AKKIIYSN+ FIWYL +EIL KHPIILNRAPTLHRLGVQAFDPVLV GR+IQLHPLVC +FNADFDGDQMAVHIPLS ESQLETRLCLLA NNFLS ++GEP I PSQDMVLGFYYLTTQNR  L G+NNYFS+FNEVI
Sbjct:  222 KPEWMIFNVLPVLPPGLRPIVQLDNGRLATSDLNEFYRKILIRTQRLGRLLSVQAPSMIIFTEKRMIQESVDALIDNGKRGPKVLDIHKRPLKSLAEMIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLHLNQCGLPYEMAVELFLPFLIHKIFFLKLAGSIKTAKKIIYSNKSFIWYLLKEILNKHPIILNRAPTLHRLGVQAFDPVLVTGRAIQLHPLVCPAFNADFDGDQMAVHIPLSLESQLETRLCLLATNNFLSPATGEPNILPSQDMVLGFYYLTTQNRIKLKGNNNYFSTFNEVI 524
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig47316.11761.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J788_ECTSI1.900e-214100.00DNA-directed RNA polymerase subunit beta' n=8 Tax=... [more]
A0A6B7EVT1_9PHAE4.040e-20495.05DNA-directed RNA polymerase subunit gamma n=1 Tax=... [more]
A0A0R6MFT6_UNDPI5.490e-20092.74DNA-directed RNA polymerase subunit beta' n=25 Tax... [more]
A0A8F0F9J3_9PHAE4.200e-19790.76DNA-directed RNA polymerase subunit gamma n=1 Tax=... [more]
A0A141BSD2_9PHAE7.210e-19387.79DNA-directed RNA polymerase subunit beta' n=14 Tax... [more]
D1GJH3_FUCVE6.480e-19287.79DNA-directed RNA polymerase subunit beta' n=3 Tax=... [more]
A0A8F0JZT2_9PHAE1.050e-18886.47DNA-directed RNA polymerase subunit gamma n=1 Tax=... [more]
A0A8F0JYE1_9PHAE3.390e-17581.52DNA-directed RNA polymerase subunit gamma n=1 Tax=... [more]
A0A8E6D698_9PHAE1.720e-17479.21DNA-directed RNA polymerase subunit beta' n=1 Tax=... [more]
A0A2I4Q2A7_9PHAE8.680e-17179.54DNA-directed RNA polymerase subunit beta' n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig47316contigH-paniculata_contig47316:21..929 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score598.2
Seed ortholog evalue2.1e-168
Seed eggNOG ortholog2880.D1J788
KEGG rclassRC02795
KEGG koko:K03046
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020
KEGG ModuleM00183
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005736,GO:0005737,GO:0009507,GO:0009536,GO:0030880,GO:0031974,GO:0031981,GO:0032991,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0055029,GO:0061695,GO:0070013,GO:1902494,GO:1990234
EggNOG free text desc.DNA-directed 5'-3' RNA polymerase activity
EggNOG OGs2QPYA@2759,COG0086@1
EC2.7.7.6
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Exons1
Model size909
Cds size897
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930406.4922867-CDS-H-paniculata_contig47316:20..9171622930406.4922867-CDS-H-paniculata_contig47316:20..917Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47316 21..917 -
1691481277.486994-CDS-H-paniculata_contig47316:20..9171691481277.486994-CDS-H-paniculata_contig47316:20..917Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47316 21..917 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930406.5116568-UTR-H-paniculata_contig47316:917..9291622930406.5116568-UTR-H-paniculata_contig47316:917..929Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig47316 918..929 -
1691481277.497395-UTR-H-paniculata_contig47316:917..9291691481277.497395-UTR-H-paniculata_contig47316:917..929Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig47316 918..929 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig47316.11761.1prot_H-paniculata_contig47316.11761.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig47316 21..917 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig47316.11761.1

>prot_H-paniculata_contig47316.11761.1 ID=prot_H-paniculata_contig47316.11761.1|Name=mRNA_H-paniculata_contig47316.11761.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=299bp
MVLHFIPVLPPGIRPIVKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVH
APSVVVLTEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQG
RFRQNLLGKRVDYSGRSVIIVGPHLKLNQCGLPYEMAIELFLPFIIYRLL
SQGLSHSIKRAKKIIYSNEPFIWYLTEEILQKHPIILNRAPTLHRLGVQA
FDPVLVRGRSIQLHPLVCSSFNADFDGDQMAVHIPLSFESQLETRLCLLA
PNNFLSASSGEPTIQPSQDMVLGFYYLTTQNRTNLCGSNNYFSSFNEVI
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mRNA from alignment at H-paniculata_contig47316:21..929-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig47316.11761.1 ID=mRNA_H-paniculata_contig47316.11761.1|Name=mRNA_H-paniculata_contig47316.11761.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=909bp|location=Sequence derived from alignment at H-paniculata_contig47316:21..929- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGACCAGAATGGATGGTACTACATTTCATTCCTGTTCTTCCACCTGGAAT
TCGTCCTATTGTAAAATTAGACAATGGAAGATTTGCAACTTCAGATTTAA
ATGAACTTTATAGAAAAATTATTATCAGAAATAAGAGACTAAAAAGGTTA
TTATCTGTTCATGCACCCAGTGTTGTTGTTTTAACAGAAAAACGAATGAT
TCAAGAAGCAGTAGATACACTTATTGACAATGGTAAGCGAGGATCAAAAA
TACTAGACGCAAATAAAAGACCTTTAAAATCATTAGCTGATATTATTGAA
GGTAAGCAGGGTAGGTTCAGGCAGAATTTGTTAGGGAAACGGGTAGACTA
TTCGGGTCGTTCAGTAATTATTGTAGGTCCTCACCTTAAATTAAACCAAT
GTGGTTTACCTTACGAAATGGCAATTGAGTTATTTTTACCATTCATTATT
TATAGACTATTATCTCAGGGGTTATCACATTCAATAAAACGAGCTAAAAA
AATTATTTATAGTAATGAGCCTTTTATTTGGTATTTAACTGAGGAAATTT
TACAAAAACATCCTATTATTTTAAACCGGGCACCAACTTTACATCGTTTG
GGGGTTCAAGCTTTTGACCCAGTATTAGTAAGAGGACGTTCTATTCAATT
ACATCCTCTAGTCTGTTCATCTTTTAATGCAGATTTTGATGGTGATCAAA
TGGCAGTTCATATTCCTTTATCTTTTGAATCTCAATTAGAAACAAGATTA
TGCTTGTTAGCTCCTAATAATTTTTTATCAGCTTCCAGTGGTGAACCAAC
AATTCAACCCTCACAGGATATGGTTTTAGGGTTTTATTATTTAACTACTC
AAAACCGAACAAATTTGTGTGGTTCAAATAATTATTTTTCAAGCTTTAAT
GAAGTAATA
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Coding sequence (CDS) from alignment at H-paniculata_contig47316:21..929-

>mRNA_H-paniculata_contig47316.11761.1 ID=mRNA_H-paniculata_contig47316.11761.1|Name=mRNA_H-paniculata_contig47316.11761.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1794bp|location=Sequence derived from alignment at H-paniculata_contig47316:21..929- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTACTACATTTCATTCCTGTTCTTCCACCTGGAATTCGTCCTATTGT
AAAATTAGACAATGGAAGATTTGCAACTTCAGATTTAAATGAACTTTATA
GAAAAATTATTATCAGAAATAAGAGACTAAAAAGGTTATTATCTGTTCAT
GCACCCAGTGTTGTTGTTTTAACAGAAAAACGAATGATTCAAGAAGCAGT
AGATACACTTATTGACAATGGTAAGCGAGGATCAAAAATACTAGACGCAA
ATAAAAGACCTTTAAAATCATTAGCTGATATTATTGAAGGTAAGCAGGGT
AGGTTCAGGCAGAATTTGTTAGGGAAACGGGTAGACTATTCGGGTCGTTC
AGTAATTATTGTAGGTCCTCACCTTAAATTAAACCAATGTGGTTTACCTT
ACGAAATGGCAATTGAGTTATTTTTACCATTCATTATTTATAGACTATTA
TCTCAGGGGTTATCACATTCAATAAAACGAGCTAAAAAAATTATTTATAG
TAATGAGCCTTTTATTTGGTATTTAACTGAGGAAATTTTACAAAAACATC
CTATTATTTTAAACCGGGCACCAACTTTACATCGTTTGGGGGTTCAAGCT
TTTGACCCAGTATTAGTAAGAGGACGTTCTATTCAATTACATCCTCTAGT
CTGTTCATCTTTTAATGCAGATTTTGATGGTGATCAAATGGCAGTTCATA
TTCCTTTATCTTTTGAATCTCAATTAGAAACAAGATTATGCTTGTTAGCT
CCTAATAATTTTTTATCAGCTTCCAGTGGTGAACCAACAATTCAACCCTC
ACAGGATATGGTTTTAGGGTTTTATTATTTAACTACTCAAAACCGAACAA
ATTTGTGTGGTTCAAATAATTATTTTTCAAGCTTTAATGAAGTAATAATG
GTACTACATTTCATTCCTGTTCTTCCACCTGGAATTCGTCCTATTGTAAA
ATTAGACAATGGAAGATTTGCAACTTCAGATTTAAATGAACTTTATAGAA
AAATTATTATCAGAAATAAGAGACTAAAAAGGTTATTATCTGTTCATGCA
CCCAGTGTTGTTGTTTTAACAGAAAAACGAATGATTCAAGAAGCAGTAGA
TACACTTATTGACAATGGTAAGCGAGGATCAAAAATACTAGACGCAAATA
AAAGACCTTTAAAATCATTAGCTGATATTATTGAAGGTAAGCAGGGTAGG
TTCAGGCAGAATTTGTTAGGGAAACGGGTAGACTATTCGGGTCGTTCAGT
AATTATTGTAGGTCCTCACCTTAAATTAAACCAATGTGGTTTACCTTACG
AAATGGCAATTGAGTTATTTTTACCATTCATTATTTATAGACTATTATCT
CAGGGGTTATCACATTCAATAAAACGAGCTAAAAAAATTATTTATAGTAA
TGAGCCTTTTATTTGGTATTTAACTGAGGAAATTTTACAAAAACATCCTA
TTATTTTAAACCGGGCACCAACTTTACATCGTTTGGGGGTTCAAGCTTTT
GACCCAGTATTAGTAAGAGGACGTTCTATTCAATTACATCCTCTAGTCTG
TTCATCTTTTAATGCAGATTTTGATGGTGATCAAATGGCAGTTCATATTC
CTTTATCTTTTGAATCTCAATTAGAAACAAGATTATGCTTGTTAGCTCCT
AATAATTTTTTATCAGCTTCCAGTGGTGAACCAACAATTCAACCCTCACA
GGATATGGTTTTAGGGTTTTATTATTTAACTACTCAAAACCGAACAAATT
TGTGTGGTTCAAATAATTATTTTTCAAGCTTTAATGAAGTAATA
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