prot_H-paniculata_contig47310.11760.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig47310.11760.1
Unique Nameprot_H-paniculata_contig47310.11760.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length195
Homology
BLAST of mRNA_H-paniculata_contig47310.11760.1 vs. uniprot
Match: A0A6H5JTV6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV6_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 5.210e-52
Identity = 97/203 (47.78%), Postives = 131/203 (64.53%), Query Frame = 0
Query:    1 MYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGDEDLSDK----------PVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVA 192
            +YGLKQ+GR W     + LV N G  Q K+DPCVFR   + VV MI+ ++VDD++VAG    C+ L A+L  +F T   GE +W+ GCA  RD+  G   +S            P R A+GS++W+S  +RPD++ AVRAVAR AH P  RHW A+ KI+ YLK T+DLG+ ++RG  L L+VYVDA YAD  + RRSV+G+A
Sbjct:  685 IYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECEWFDGCAIERDVEAGTLRISQTAYIDSMGEEWPAREAIGSMVWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVAGLA 885          
BLAST of mRNA_H-paniculata_contig47310.11760.1 vs. uniprot
Match: A0A6H5KFN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN5_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 2.390e-44
Identity = 87/192 (45.31%), Postives = 120/192 (62.50%), Query Frame = 0
Query:    1 MYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTRGELKWYLGCAFWRDIVRGDEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVA 192
            +YGLKQ+GR W     + LV N G  Q K+DPCVFR   + VV MI+ ++VDD++VAG    C+     +      +   +    G        R DE+  + PVR A+GS++W+S  +RPD++ AVRAVAR AH P  R+W A+ KI+ YLK T+DLG+ ++RG  L L+VYVDA YAD  + RRSVSG+A
Sbjct:  185 IYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEECQCMVERFDVKSTSRIPATPGADLGPK--REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRNWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLA 372          
BLAST of mRNA_H-paniculata_contig47310.11760.1 vs. uniprot
Match: A0A6H5K5V9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5V9_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 1.340e-40
Identity = 83/192 (43.23%), Postives = 114/192 (59.38%), Query Frame = 0
Query:    1 MYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVF-RLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGDEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSG 190
            +YGLKQ+GR W     +  V N G  Q K+DP VF  +    VV +I+ ++VDD++V G    C+ L A+L  +F T   GE         W    R DE+      R A+GS++W+S  +RPD++ AVRAVAR AH P  RHW A+ KI+ YLK T+DLG+ ++RG  L L+VYVDA YAD  + R +  G
Sbjct:   52 IYGLKQSGRQWGYHAADTPVEN-GFEQCKADPFVFPNMVDEVVVMIIIVIYVDDILVVGSDEDCEELLASLNKKFPTKNLGE---------WPK--REDEERXXXXXREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTEDRRSATVG 231          
BLAST of mRNA_H-paniculata_contig47310.11760.1 vs. uniprot
Match: A0A6H5KLY3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLY3_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 1.740e-40
Identity = 85/194 (43.81%), Postives = 118/194 (60.82%), Query Frame = 0
Query:    1 MYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTRGELKWYLGCAFWRDI--VRGDEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVA 192
            +YGLKQ+GR W     + LV N G  Q K+DPCVFR   + VV MI+ ++VDD++VAG            R + Q+T      ++      D+   R +E   + PVR A+GS++W+S  +RPD++ AV AV R AH P  RHW A+ KI+ YL  T+ LG+ ++RG  L L+VYVDA YAD  + RRSVSG+A
Sbjct:   52 IYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGM---------VRRFDVQSTS-----HIPATPGADLGPKRDNEKGGEWPVREAIGSMVWVSTFSRPDVSFAVPAVVRHAHAPAKRHWDAIQKILGYLTGTRYLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLA 229          
BLAST of mRNA_H-paniculata_contig47310.11760.1 vs. uniprot
Match: A0A6H5K1X1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X1_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 4.670e-40
Identity = 92/217 (42.40%), Postives = 121/217 (55.76%), Query Frame = 0
Query:    1 MYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRG----------------DEDLSDKPVRSAVGSLI-WLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERG--RDLNLSVYVDAD---YADKSNWRRSVSGVAVM 194
            +YGLKQA R W   L   L+  +G+ Q  +D CVFRL + G V MI+ VHVDD+  AG+  +CD     L         GEL+WY  C + RD+ RG                +E  +D P R  VGSL+ WL+  TRPDIA+AVRAVAR   +P   HW A + I+ Y++RT  +G+ FERG    +++ V+VDAD   Y      RRSVSG  VM
Sbjct:   75 LYGLKQASRHWHAHLTRCLLL-LGLLQCLADACVFRLMEEGNVVMIIVVHVDDIFAAGQKERCDKFGRDLNEMVPVKNLGELRWYSACFYERDVERGLLKISQQSVKLSDFDVNEASADVPFRELVGSLMMWLATQTRPDIANAVRAVARYCASPKMVHWTAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADNAVYCSVVPXRRSVSGGLVM 290          
BLAST of mRNA_H-paniculata_contig47310.11760.1 vs. uniprot
Match: A0A6H5JUF5_9PHAE (C3H1-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUF5_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 6.070e-39
Identity = 83/192 (43.23%), Postives = 114/192 (59.38%), Query Frame = 0
Query:    1 MYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDI----------------VRGDEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVD 175
            +YGLKQ+GR W   + + LV N G  Q K+DPCVFR   N VV MI  ++VDD++VAG     + L A+L  +F T   GE + + G     D+                 R DE   + PVR A+GS++W+S  +RPD++ AVRAVAR AH P  RHW A+ KI+ +LK T+DL + ++RG  L L+VYVD
Sbjct:  226 IYGLKQSGRQWGYHVADTLVEN-GFEQCKADPCVFRKMVNKVVVMISMIYVDDILVAGSDEDREELLASLNNKFPTKNLGECERFDGTVKCFDVRSTSRIPASPGVDLGSKRDDEKGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGFLKGTRDLDITYQRGSGLGLAVYVD 416          
BLAST of mRNA_H-paniculata_contig47310.11760.1 vs. uniprot
Match: A0A6H5JHS1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHS1_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 2.350e-37
Identity = 86/198 (43.43%), Postives = 110/198 (55.56%), Query Frame = 0
Query:    1 MYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDI-----VRGDEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERG--RDLNLSVYVDADYADKSNWRRSVSG 190
            +YGL+Q  R W   L   LV  +G  Q  +D CVFRL ++G V +IL VHVDD    G+   CD   A L         G+L+ Y GC + R+      V G E  +D P R  VGSL+WL+  TRPDIA+AVRAVAR   +P   HWKA +  + Y +RT   G+  +RG      L  Y DAD+A K+  RRSVSG
Sbjct:  221 LYGLRQTSRQWHATLKRCLVE-LGFAQCMADACVFRLIEDGCVVLILVVHVDDTFAMGERESCDKFGADLNKSVPVKNLGDLRCYSGCFYERNKETEYGVVGVEVATDFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWKAAMDTLGYARRTSHFGISVQRGTVEGFTLEGYADADFASKAADRRSVSG 417          
BLAST of mRNA_H-paniculata_contig47310.11760.1 vs. uniprot
Match: A0A6H5KTI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTI8_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 4.840e-37
Identity = 78/167 (46.71%), Postives = 108/167 (64.67%), Query Frame = 0
Query:   39 KNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQT---------TRGELKWY--LGCAFWRDI--VRGDEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVA 192
            K+ VV MI+ ++VDD++VAG    C  L  ++   F T          R +++    +  +   DI   R DE   + PVR A+GS++W+S  +RPDI+ AVRAVAR AH P +RHWKA+VKI++YLK T+DLG+ +ERG  L L+VYVDA YAD  + RRSVSG+A
Sbjct:    2 KDDVVVMIIVIYVDDILVAGSDDDCKELLDSINKAFPTKDLGECVIVNRFDVQSTSSIPASPGVDIGPKRDDESGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAED-RRSVSGLA 167          
BLAST of mRNA_H-paniculata_contig47310.11760.1 vs. uniprot
Match: A0A6H5KQ05_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ05_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 1.410e-36
Identity = 84/209 (40.19%), Postives = 117/209 (55.98%), Query Frame = 0
Query:    1 MYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIV----------------RGDEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVA 192
            +YGLKQ+GR W       LV +    Q K+DPCVFR   + VV MI+ +++DD++VAG    C+ L A+L     T   GE +W+ G     D+                 +GDE     PVR A+GS++W+S  +RPD++ AVRA            W A+ KI+ Y K T+DLG+ ++RG  L L+VYVDA YAD  + RRSVSG+A
Sbjct:  176 IYGLKQSGRQWGYHAAGTLVES-RFEQCKADPCVFRKMVDEVVVMIIVIYLDDILVAGSDEDCEELLASLNKTNPTNSLGECEWFDGMVRRFDVQSTSRIPASPGADLGPKQGDEKGGQWPVREAIGSMMWVSTFSRPDVSFAVRA------------WDAIQKIVGYSKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLA 370          
BLAST of mRNA_H-paniculata_contig47310.11760.1 vs. uniprot
Match: A0A6H5L6V8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6V8_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 6.730e-35
Identity = 83/192 (43.23%), Postives = 107/192 (55.73%), Query Frame = 0
Query:    1 MYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTRGELKWYLGCAFWRDIVRGDEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERG--RDLNLSVYVDADYADKSNWRRSVSG 190
            +YGL+QA R W   L   LV  +G  Q  +D CVFRL ++G V +IL VHVDD+   G+  +CD L A L   +    GE           D    DE  +D P R  VGSL+WL+  TRPDIA+AVRAVAR   +P   HW A + I+ Y +RT   G+  +R      +L  Y DAD+A K+  RRSVSG
Sbjct: 1009 LYGLRQASRQWHAMLKRCLVA-LGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGERERCDKLGADLNKVYGVVGGENVPMSSGVKLPDF-DADEMETDYPFRQLVGSLMWLATQTRPDIANAVRAVARYCSSPKQVHWDAAIGILGYARRTSHFGISLQRRTVEGFSLQGYADADFASKAADRRSVSG 1198          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig47310.11760.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTV6_9PHAE5.210e-5247.78Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KFN5_9PHAE2.390e-4445.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5V9_9PHAE1.340e-4043.23Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KLY3_9PHAE1.740e-4043.81Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1X1_9PHAE4.670e-4042.40Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JUF5_9PHAE6.070e-3943.23C3H1-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JHS1_9PHAE2.350e-3743.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KTI8_9PHAE4.840e-3746.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQ05_9PHAE1.410e-3640.19Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L6V8_9PHAE6.730e-3543.23Integrase catalytic domain-containing protein n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 1..91
e-value: 6.4E-9
score: 35.8
NoneNo IPR availablePANTHERPTHR11439:SF275coord: 105..193
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 105..193

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig47310contigH-paniculata_contig47310:746..1444 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig47310.11760.1mRNA_H-paniculata_contig47310.11760.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig47310 746..1465 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig47310.11760.1 ID=prot_H-paniculata_contig47310.11760.1|Name=mRNA_H-paniculata_contig47310.11760.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=195bp
MYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVH
VDDVIVAGKSVKCDSLFAALRAEFQTTRGELKWYLGCAFWRDIVRGDEDL
SDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIIS
YLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVAVM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like