mRNA_H-paniculata_contig4730.11758.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4730.11758.1
Unique NamemRNA_H-paniculata_contig4730.11758.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4730.11758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4730contigH-paniculata_contig4730:10196..11523 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1198
Cds size783
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4730.11758.1prot_H-paniculata_contig4730.11758.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4730 10492..11404 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930406.2746594-UTR-H-paniculata_contig4730:10195..104911622930406.2746594-UTR-H-paniculata_contig4730:10195..10491Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4730 10196..10491 -
1691481277.4127336-UTR-H-paniculata_contig4730:10195..104911691481277.4127336-UTR-H-paniculata_contig4730:10195..10491Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4730 10196..10491 -
1622930406.3235261-UTR-H-paniculata_contig4730:11404..115231622930406.3235261-UTR-H-paniculata_contig4730:11404..11523Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4730 11405..11523 -
1691481277.4372404-UTR-H-paniculata_contig4730:11404..115231691481277.4372404-UTR-H-paniculata_contig4730:11404..11523Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4730 11405..11523 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930406.2884586-CDS-H-paniculata_contig4730:10491..105301622930406.2884586-CDS-H-paniculata_contig4730:10491..10530Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4730 10492..10530 -
1691481277.4212625-CDS-H-paniculata_contig4730:10491..105301691481277.4212625-CDS-H-paniculata_contig4730:10491..10530Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4730 10492..10530 -
1622930406.3049593-CDS-H-paniculata_contig4730:10660..114041622930406.3049593-CDS-H-paniculata_contig4730:10660..11404Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4730 10661..11404 -
1691481277.4293797-CDS-H-paniculata_contig4730:10660..114041691481277.4293797-CDS-H-paniculata_contig4730:10660..11404Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4730 10661..11404 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4730.11758.1

>prot_H-paniculata_contig4730.11758.1 ID=prot_H-paniculata_contig4730.11758.1|Name=mRNA_H-paniculata_contig4730.11758.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=261bp
MVQRRDVFCSNGSDSGISVMTSIVEMGVLSPVQEETAAVETTNPMRKALA
QSPSFHIFGGEEEGAALGSQPFSTNGGSSMREGEEEEETEGMFADAAVVA
ELAAAAAEQAQKPAQALISNPSSRELQQIAGGWMRSLSWRTPSSNTTANS
DESEGFAREPTSKVNNDPLGPATAATVVLSPKQPGTRHPSKPPLAVAQQE
LAKSSTDPVTTVATNGIMTASGQETHTARPQEVPVVSKPTTVTAAPSGLR
RLRRLSTCRP*
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mRNA from alignment at H-paniculata_contig4730:10196..11523-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4730.11758.1 ID=mRNA_H-paniculata_contig4730.11758.1|Name=mRNA_H-paniculata_contig4730.11758.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1328bp|location=Sequence derived from alignment at H-paniculata_contig4730:10196..11523- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCTTGTGGCGATTTGCTTGATTGGACGCCATGTAGTCCACAGCCATGAT
AAGTGCGACTCTTCCAAGGATCAGCAGGACACTGTTGCCACCAATGTTAG
CAGCACCTCAGCTCCAGAAATGGTACAGCGCAGAGACGTGTTCTGCAGCA
ATGGCAGTGACAGCGGCATATCGGTGATGACCAGCATTGTTGAGATGGGA
GTGCTAAGTCCGGTGCAAGAAGAAACCGCCGCCGTGGAAACGACTAATCC
GATGAGGAAAGCACTAGCGCAATCACCTTCGTTCCATATTTTTGGTGGAG
AGGAAGAGGGGGCGGCGCTGGGTTCTCAACCGTTCAGTACGAATGGAGGC
AGCTCAATGAGAGAGGGTGAGGAGGAAGAGGAAACTGAAGGTATGTTCGC
CGATGCCGCGGTTGTGGCGGAGCTCGCGGCAGCCGCGGCAGAGCAAGCCC
AGAAACCCGCGCAGGCGCTCATCTCGAATCCTTCATCTCGGGAATTGCAG
CAGATCGCGGGTGGATGGATGAGGTCCCTTTCTTGGCGCACTCCCAGCTC
AAACACAACTGCAAACAGTGACGAGAGTGAGGGGTTCGCAAGAGAGCCGA
CTTCAAAAGTCAACAACGATCCACTGGGTCCTGCAACCGCTGCTACGGTC
GTTCTGTCTCCAAAACAGCCTGGAACGCGACACCCGTCTAAACCTCCGTT
GGCCGTTGCACAGCAGGAATTGGCCAAGAGCTCGACCGATCCTGTGACAA
CGGTGGCGACAAATGGGATAATGACGGCGAGCGGACAGGAAACTCACACG
GCTAGACCCCAGGAGGTTCCAGTGGTTAGCAAGCCCACGACTGTGACCGC
TGCGCCAAGTGGGGTAGTGGCGGCGAATACCCAGCAAACTCTCGCAGCTG
GACTTCAGGTGACTCCGATAGTTAGCAAACCCTCAGCTTTCACGGCAGCA
CCAAATAGAGCAGTGCCAACGACAGTCCAGCGACCTCCCAAAGCTCAGGA
GGCTGCGGCGATTGTCAACGTGCCGGCCGTGACGACGGCGGCATTTGGGA
TAGTGGCGGCGCCGTCCCAGCAATCTCCCACAGCTGAAGTGCAGGCGGCT
CCAGTGGCTACCGAAGCGATGATCCCGACGGCACGGGAAGGTAAATTAGT
CCCGGCGGTCACCCAGCGAACACCCGCGGATAAAACCCAAGTGGCTAGAG
TGGCTAGCAAGCCGGCGACTAGTGAGGTAGTGATGCTGAAAGCTCAGCAA
GCTCTCACGGCTAGAGCCCAAACGGCCCCGGTGGCCACGGTCGAGCACAC
TCCGGTGACTACAGCCCAAGCGAATCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig4730:10196..11523-

>mRNA_H-paniculata_contig4730.11758.1 ID=mRNA_H-paniculata_contig4730.11758.1|Name=mRNA_H-paniculata_contig4730.11758.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1566bp|location=Sequence derived from alignment at H-paniculata_contig4730:10196..11523- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTACAGCGCAGAGACGTGTTCTGCAGCAATGGCAGTGACAGCGGCAT
ATCGGTGATGACCAGCATTGTTGAGATGGGAGTGCTAAGTCCGGTGCAAG
AAGAAACCGCCGCCGTGGAAACGACTAATCCGATGAGGAAAGCACTAGCG
CAATCACCTTCGTTCCATATTTTTGGTGGAGAGGAAGAGGGGGCGGCGCT
GGGTTCTCAACCGTTCAGTACGAATGGAGGCAGCTCAATGAGAGAGGGTG
AGGAGGAAGAGGAAACTGAAGGTATGTTCGCCGATGCCGCGGTTGTGGCG
GAGCTCGCGGCAGCCGCGGCAGAGCAAGCCCAGAAACCCGCGCAGGCGCT
CATCTCGAATCCTTCATCTCGGGAATTGCAGCAGATCGCGGGTGGATGGA
TGAGGTCCCTTTCTTGGCGCACTCCCAGCTCAAACACAACTGCAAACAGT
GACGAGAGTGAGGGGTTCGCAAGAGAGCCGACTTCAAAAGTCAACAACGA
TCCACTGGGTCCTGCAACCGCTGCTACGGTCGTTCTGTCTCCAAAACAGC
CTGGAACGCGACACCCGTCTAAACCTCCGTTGGCCGTTGCACAGCAGGAA
TTGGCCAAGAGCTCGACCGATCCTGTGACAACGGTGGCGACAAATGGGAT
AATGACGGCGAGCGGACAGGAAACTCACACGGCTAGACCCCAGGAGGTTC
CAGTGGTTAGCAAGCCCACGACTGTGACCGCTGCGCCAAGTGGGATGGTA
CAGCGCAGAGACGTGTTCTGCAGCAATGGCAGTGACAGCGGCATATCGGT
GATGACCAGCATTGTTGAGATGGGAGTGCTAAGTCCGGTGCAAGAAGAAA
CCGCCGCCGTGGAAACGACTAATCCGATGAGGAAAGCACTAGCGCAATCA
CCTTCGTTCCATATTTTTGGTGGAGAGGAAGAGGGGGCGGCGCTGGGTTC
TCAACCGTTCAGTACGAATGGAGGCAGCTCAATGAGAGAGGGTGAGGAGG
AAGAGGAAACTGAAGGTATGTTCGCCGATGCCGCGGTTGTGGCGGAGCTC
GCGGCAGCCGCGGCAGAGCAAGCCCAGAAACCCGCGCAGGCGCTCATCTC
GAATCCTTCATCTCGGGAATTGCAGCAGATCGCGGGTGGATGGATGAGGT
CCCTTTCTTGGCGCACTCCCAGCTCAAACACAACTGCAAACAGTGACGAG
AGTGAGGGGTTCGCAAGAGAGCCGACTTCAAAAGTCAACAACGATCCACT
GGGTCCTGCAACCGCTGCTACGGTCGTTCTGTCTCCAAAACAGCCTGGAA
CGCGACACCCGTCTAAACCTCCGTTGGCCGTTGCACAGCAGGAATTGGCC
AAGAGCTCGACCGATCCTGTGACAACGGTGGCGACAAATGGGATAATGAC
GGCGAGCGGACAGGAAACTCACACGGCTAGACCCCAGGAGGTTCCAGTGG
TTAGCAAGCCCACGACTGTGACCGCTGCGCCAAGTGGGCTCAGGAGGCTG
CGGCGATTGTCAACGTGCCGGCCGTGACTCAGGAGGCTGCGGCGATTGTC
AACGTGCCGGCCGTGA
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