mRNA_H-paniculata_contig4730.11757.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4730.11757.1
Unique NamemRNA_H-paniculata_contig4730.11757.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4730.11757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4730contigH-paniculata_contig4730:8819..9962 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1127
Cds size849
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4730.11757.1prot_H-paniculata_contig4730.11757.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4730 9075..9940 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930406.1719577-UTR-H-paniculata_contig4730:8818..90741622930406.1719577-UTR-H-paniculata_contig4730:8818..9074Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4730 8819..9074 -
1691481277.3734078-UTR-H-paniculata_contig4730:8818..90741691481277.3734078-UTR-H-paniculata_contig4730:8818..9074Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4730 8819..9074 -
1622930406.2236528-UTR-H-paniculata_contig4730:9940..99621622930406.2236528-UTR-H-paniculata_contig4730:9940..9962Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4730 9941..9962 -
1691481277.403608-UTR-H-paniculata_contig4730:9940..99621691481277.403608-UTR-H-paniculata_contig4730:9940..9962Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4730 9941..9962 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930406.1971986-CDS-H-paniculata_contig4730:9074..90961622930406.1971986-CDS-H-paniculata_contig4730:9074..9096Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4730 9075..9096 -
1691481277.3825736-CDS-H-paniculata_contig4730:9074..90961691481277.3825736-CDS-H-paniculata_contig4730:9074..9096Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4730 9075..9096 -
1622930406.2116969-CDS-H-paniculata_contig4730:9113..99401622930406.2116969-CDS-H-paniculata_contig4730:9113..9940Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4730 9114..9940 -
1691481277.3930743-CDS-H-paniculata_contig4730:9113..99401691481277.3930743-CDS-H-paniculata_contig4730:9113..9940Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4730 9114..9940 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4730.11757.1

>prot_H-paniculata_contig4730.11757.1 ID=prot_H-paniculata_contig4730.11757.1|Name=mRNA_H-paniculata_contig4730.11757.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=283bp
MKGREKEGALIASGKLVTGVDSAREIPTDGKPQANVSRGLHEADNKKALD
IADVFPAISSAVRKALALPAFPAVKAAVRSAPTVPSPVNVQDFPLQQPSL
CMHPTNAAIPPGTAQPGGLAYPEIGSNISIHGNGGAKDHSLAAVEVSSPS
QQRPLTPLTTTPDRTPRVGGSLSSGLGAQWTTPLATPDRTPRESTTVPKA
LSTSSATKSGASNAWTVPDRSRVAAGPDSREEVSPERSSKPDNDGAPRVG
MVGITPTDEAQFGWNVDPPVAMDGFPRAHKCC*
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mRNA from alignment at H-paniculata_contig4730:8819..9962-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4730.11757.1 ID=mRNA_H-paniculata_contig4730.11757.1|Name=mRNA_H-paniculata_contig4730.11757.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1144bp|location=Sequence derived from alignment at H-paniculata_contig4730:8819..9962- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGGAAGCATCCACCGCGGTTATGAAAGGACGGGAAAAGGAAGGGGCGC
TGATTGCTTCGGGAAAATTGGTGACTGGAGTGGATTCCGCACGGGAAATT
CCTACTGATGGCAAACCTCAAGCGAATGTTTCACGTGGGCTTCACGAGGC
GGATAACAAGAAGGCTCTGGACATTGCCGACGTTTTTCCCGCTATCTCAT
CTGCGGTTCGAAAGGCCTTGGCACTACCGGCCTTTCCGGCAGTGAAGGCA
GCGGTTCGCTCGGCACCAACCGTTCCATCGCCCGTGAATGTCCAAGATTT
CCCATTACAGCAGCCGTCGCTGTGCATGCATCCTACAAACGCAGCAATAC
CACCGGGTACGGCTCAACCGGGGGGTCTTGCTTACCCCGAGATAGGAAGC
AACATAAGTATCCACGGAAATGGAGGAGCTAAGGATCATTCATTGGCAGC
AGTAGAAGTGTCTTCCCCGTCGCAACAGCGGCCATTGACACCGTTGACGA
CTACGCCAGATCGTACACCGCGAGTGGGGGGTTCGCTGAGCTCGGGTTTA
GGTGCGCAATGGACAACGCCGCTTGCTACGCCAGATCGCACGCCAAGGGA
GTCGACCACCGTTCCGAAGGCATTATCCACATCATCGGCAACCAAATCGG
GCGCATCGAACGCTTGGACCGTGCCGGATCGCTCCCGCGTGGCAGCTGGG
CCAGATTCTAGGGAAGAAGTGTCGCCTGAGCGAAGTTCCAAACCCGATAA
CGACGGTGCACCACGGGTAGGGATGGTTGGAATAACACCGACCGACGAGG
CGCAGTTTGGGTGGAACGTGGACCCCCCCGTGGCGATGGATGGCTTCCCG
TCCCCATGCGAACAAGGCGTGCCCACAAATGCTGTTAGGAGTGGAGACCG
CGACCCCCCGGCCATATTGGGACGACCTTCTCCGCACAACACCGCCGCTG
AATGTCTGACAGAGCCGTTGGGATCTGATCCACAGAGTACCAACGTCCTT
TCTCATCCGTCCAACACCAGCGGAGACACGGTCGCTTCGTACCCCGCTTT
GGATTCTGCGGCTACTTTCACAGAGGGACCAGGCTTGACGATGGCACCGT
TGGCAACCTTCACGGCTGGCACAGAATCGGCGCCCCACGACCGA
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Coding sequence (CDS) from alignment at H-paniculata_contig4730:8819..9962-

>mRNA_H-paniculata_contig4730.11757.1 ID=mRNA_H-paniculata_contig4730.11757.1|Name=mRNA_H-paniculata_contig4730.11757.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1698bp|location=Sequence derived from alignment at H-paniculata_contig4730:8819..9962- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAGGACGGGAAAAGGAAGGGGCGCTGATTGCTTCGGGAAAATTGGT
GACTGGAGTGGATTCCGCACGGGAAATTCCTACTGATGGCAAACCTCAAG
CGAATGTTTCACGTGGGCTTCACGAGGCGGATAACAAGAAGGCTCTGGAC
ATTGCCGACGTTTTTCCCGCTATCTCATCTGCGGTTCGAAAGGCCTTGGC
ACTACCGGCCTTTCCGGCAGTGAAGGCAGCGGTTCGCTCGGCACCAACCG
TTCCATCGCCCGTGAATGTCCAAGATTTCCCATTACAGCAGCCGTCGCTG
TGCATGCATCCTACAAACGCAGCAATACCACCGGGTACGGCTCAACCGGG
GGGTCTTGCTTACCCCGAGATAGGAAGCAACATAAGTATCCACGGAAATG
GAGGAGCTAAGGATCATTCATTGGCAGCAGTAGAAGTGTCTTCCCCGTCG
CAACAGCGGCCATTGACACCGTTGACGACTACGCCAGATCGTACACCGCG
AGTGGGGGGTTCGCTGAGCTCGGGTTTAGGTGCGCAATGGACAACGCCGC
TTGCTACGCCAGATCGCACGCCAAGGGAGTCGACCACCGTTCCGAAGGCA
TTATCCACATCATCGGCAACCAAATCGGGCGCATCGAACGCTTGGACCGT
GCCGGATCGCTCCCGCGTGGCAGCTGGGCCAGATTCTAGGGAAGAAGTGT
CGCCTGAGCGAAGTTCCAAACCCGATAACGACGGTGCACCACGGGTAGGG
ATGGTTGGAATAACACCGACCGACGAGGCGCAGTTTGGGTGGAACGTGGA
CCCCCCCGTGGCGATGGATGGCTTCCCATGAAAGGACGGGAAAAGGAAGG
GGCGCTGATTGCTTCGGGAAAATTGGTGACTGGAGTGGATTCCGCACGGG
AAATTCCTACTGATGGCAAACCTCAAGCGAATGTTTCACGTGGGCTTCAC
GAGGCGGATAACAAGAAGGCTCTGGACATTGCCGACGTTTTTCCCGCTAT
CTCATCTGCGGTTCGAAAGGCCTTGGCACTACCGGCCTTTCCGGCAGTGA
AGGCAGCGGTTCGCTCGGCACCAACCGTTCCATCGCCCGTGAATGTCCAA
GATTTCCCATTACAGCAGCCGTCGCTGTGCATGCATCCTACAAACGCAGC
AATACCACCGGGTACGGCTCAACCGGGGGGTCTTGCTTACCCCGAGATAG
GAAGCAACATAAGTATCCACGGAAATGGAGGAGCTAAGGATCATTCATTG
GCAGCAGTAGAAGTGTCTTCCCCGTCGCAACAGCGGCCATTGACACCGTT
GACGACTACGCCAGATCGTACACCGCGAGTGGGGGGTTCGCTGAGCTCGG
GTTTAGGTGCGCAATGGACAACGCCGCTTGCTACGCCAGATCGCACGCCA
AGGGAGTCGACCACCGTTCCGAAGGCATTATCCACATCATCGGCAACCAA
ATCGGGCGCATCGAACGCTTGGACCGTGCCGGATCGCTCCCGCGTGGCAG
CTGGGCCAGATTCTAGGGAAGAAGTGTCGCCTGAGCGAAGTTCCAAACCC
GATAACGACGGTGCACCACGGGTAGGGATGGTTGGAATAACACCGACCGA
CGAGGCGCAGTTTGGGTGGAACGTGGACCCCCCCGTGGCGATGGATGGCT
TCCCGCGTGCCCACAAATGCTGTTAGGCGTGCCCACAAATGCTGTTAG
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