mRNA_H-paniculata_contig473.11756.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig473.11756.1
Unique NamemRNA_H-paniculata_contig473.11756.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig473.11756.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig473contigH-paniculata_contig473:21629..22214 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons1
Model size586
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig473.11756.1prot_H-paniculata_contig473.11756.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig473 21764..22114 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930406.0895185-UTR-H-paniculata_contig473:21628..217631622930406.0895185-UTR-H-paniculata_contig473:21628..21763Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig473 21629..21763 +
1691481277.344092-UTR-H-paniculata_contig473:21628..217631691481277.344092-UTR-H-paniculata_contig473:21628..21763Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig473 21629..21763 +
1622930406.1190753-UTR-H-paniculata_contig473:22114..222141622930406.1190753-UTR-H-paniculata_contig473:22114..22214Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig473 22115..22214 +
1691481277.3622448-UTR-H-paniculata_contig473:22114..222141691481277.3622448-UTR-H-paniculata_contig473:22114..22214Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig473 22115..22214 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930406.1030538-CDS-H-paniculata_contig473:21763..221141622930406.1030538-CDS-H-paniculata_contig473:21763..22114Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig473 21764..22114 +
1691481277.353759-CDS-H-paniculata_contig473:21763..221141691481277.353759-CDS-H-paniculata_contig473:21763..22114Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig473 21764..22114 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig473.11756.1

>prot_H-paniculata_contig473.11756.1 ID=prot_H-paniculata_contig473.11756.1|Name=mRNA_H-paniculata_contig473.11756.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
MPSKGITVKGSCSSLSAFSLWRFSLFMVFCLDIHVCMNFPAPSSTVWYHS
AGFLDCSSCRSPLISSSLRSSSTHFFQLFSGPPVIMFPGFPSNRPSTIRL
GQRVSSSWTRQANGSL*
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mRNA from alignment at H-paniculata_contig473:21629..22214+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig473.11756.1 ID=mRNA_H-paniculata_contig473.11756.1|Name=mRNA_H-paniculata_contig473.11756.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=586bp|location=Sequence derived from alignment at H-paniculata_contig473:21629..22214+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGACACAAGCAAGGGGGGAACTCGCATATTATATGTCATATCAAGGGGGC
AGTCCGAATGGAAAAGCATATATTTAAGGTTCGAGGTCAACGAGGCACGC
CTGTGGGTGGGCAAAGACCACCATCGTTATAAAGAATGCCCAGCAAGGGT
ATCACAGTCAAAGGGTCGTGCTCCTCCTTATCCGCTTTCTCCTTGTGGCG
TTTCTCTCTTTTCATGGTCTTCTGCTTGGATATCCACGTTTGCATGAATT
TTCCTGCTCCTTCCTCCACGGTCTGGTACCACTCAGCGGGGTTCCTGGAT
TGCTCATCGTGTCGGTCACCTCTGATCTCGAGTAGTTTGAGGTCATCTTC
CACGCATTTTTTCCAGCTCTTTTCTGGCCCGCCGGTAATAATGTTTCCTG
GGTTTCCGTCCAATCGTCCGTCAACCATCCGCTTGGGCCAGCGCGTATCG
TCCAGTTGGACCCGTCAGGCAAACGGAAGTCTCTGACAGTAGCCTCCATC
GGCAGATGGTTGTCTCAATACTCCCACGTCTGATCCTTTCAAGCGCATCC
ATCTAGTAGGCGAGTATATTGTCCACGTGTTTTCTC
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Coding sequence (CDS) from alignment at H-paniculata_contig473:21629..22214+

>mRNA_H-paniculata_contig473.11756.1 ID=mRNA_H-paniculata_contig473.11756.1|Name=mRNA_H-paniculata_contig473.11756.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig473:21629..22214+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCAGCAAGGGTATCACAGTCAAAGGGTCGTGCTCCTCCTTATCCGC
TTTCTCCTTGTGGCGTTTCTCTCTTTTCATGGTCTTCTGCTTGGATATCC
ACGTTTGCATGAATTTTCCTGCTCCTTCCTCCACGGTCTGGTACCACTCA
GCGGGGTTCCTGGATTGCTCATCGTGTCGGTCACCTCTGATCTCGAGTAG
TTTGAGGTCATCTTCCACGCATTTTTTCCAGCTCTTTTCTGGCCCGCCGG
TAATAATGTTTCCTGGGTTTCCGTCCAATCGTCCGTCAACCATCCGCTTG
GGCCAGCGCGTATCGTCCAGTTGGACCCGTCAGGCAAACGGAAGTCTCTG
AATGCCCAGCAAGGGTATCACAGTCAAAGGGTCGTGCTCCTCCTTATCCG
CTTTCTCCTTGTGGCGTTTCTCTCTTTTCATGGTCTTCTGCTTGGATATC
CACGTTTGCATGAATTTTCCTGCTCCTTCCTCCACGGTCTGGTACCACTC
AGCGGGGTTCCTGGATTGCTCATCGTGTCGGTCACCTCTGATCTCGAGTA
GTTTGAGGTCATCTTCCACGCATTTTTTCCAGCTCTTTTCTGGCCCGCCG
GTAATAATGTTTCCTGGGTTTCCGTCCAATCGTCCGTCAACCATCCGCTT
GGGCCAGCGCGTATCGTCCAGTTGGACCCGTCAGGCAAACGGAAGTCTCT
GA
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