mRNA_H-paniculata_contig47290.11753.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig47290.11753.1
Unique NamemRNA_H-paniculata_contig47290.11753.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig47290.11753.1 vs. uniprot
Match: A0A6H5K9W0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9W0_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 9.250e-29
Identity = 63/164 (38.41%), Postives = 95/164 (57.93%), Query Frame = 1 
Query:   13 MHPTFKASARARGLITGEEECFICVEDASHFQSHRDLRGLLITLVLNGGPARRLWDESQDIRFVHFLLRMTLHDARHVALREIGLKLLMHGKSNVQVNFPATRN----------AFDHCSEILFATDHLPLRITERGHTYDTVLAAIHRRRGHPVTIDAPADTG 474
            +H TF+ +ARA+GL+TG+EE FIC+E+A  F+    LRGL +TL+L+GGPA +LW++ +D     F   +   DA   ALR I LKL  HGK+N Q+  P   +          +F+   +  +A    P   +E+   Y+T++ A+  ++  P  IDAPA TG
Sbjct:  122 VHVTFQDAARAQGLVTGQEEYFICMEEAITFEMPSQLRGLFVTLILDGGPAPKLWNDYKDHLIEDFTRTLDNTDACQEALRVIDLKLQHHGKTNTQLGLPEPSHRQTEYQRMVASFNPSQQTAYADRFEPGLTSEQRDVYNTIIDAVRNKQPQPFMIDAPAGTG 285
[Close]
BLAST of mRNA_H-paniculata_contig47290.11753.1 vs. uniprot
Match: A0A6H5L0I5_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0I5_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 2.100e-24
Identity = 61/172 (35.47%), Postives = 94/172 (54.65%), Query Frame = 1 
Query:    4 DPIMHPTFKASARARGLITGEEECFICVEDASHFQSHRDLRGLLITLVLNGGPARRLWDESQDIRFVHFLLRMTLHDARHVALREIGLKLLMHGKSNVQVNFPAT----------RNAFDHCSEILFATDHLPLRITERGHTYDTVLAAIHRRRGHPVTIDAPADTGKTFVE 489
            D  ++ TF+ +ARA G+I  ++E  IC+++A  F + R LR L +TL+L+G PA+ LW++          + M+  DA + ALR+I L L  HG++N  V  PA           ++ FD      F  +HL     E+ H YDTV++++     +   IDAPA TGKT+ E
Sbjct:  321 DDTVYDTFQDAARAMGIIKHDDEYRICLQEAVIFNTGRQLRELFVTLILDGAPAKILWEQFNQDFTEDLRINMSDRDANNTALRQIDLVLQHHGRTNEVVGLPAVIHLDTEYIRFKHMFDPAQMSAFVDEHLANLTHEQRHVYDTVVSSVTSGASNLFMIDAPAGTGKTYTE 492
[Close]
BLAST of mRNA_H-paniculata_contig47290.11753.1 vs. uniprot
Match: A0A6H5JZJ6_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZJ6_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 2.470e-23
Identity = 60/172 (34.88%), Postives = 93/172 (54.07%), Query Frame = 1 
Query:    4 DPIMHPTFKASARARGLITGEEECFICVEDASHFQSHRDLRGLLITLVLNGGPARRLWDESQDIRFVHFLLRMTLHDARHVALREIGLKLLMHGKSNVQVNFPAT----------RNAFDHCSEILFATDHLPLRITERGHTYDTVLAAIHRRRGHPVTIDAPADTGKTFVE 489
            D  ++ TF+ +ARA G+I  ++E  IC+++A  F + R LR L +TL+L+G PA+ LW++          + M+  DA + ALR+I L L  HG++N  V   A           ++ FD      F  +HL     E+ H YDTV++++     +   IDAPA TGKT+ E
Sbjct:  158 DDTVYDTFQDAARAMGIIKHDDEYRICLQEAVIFNTGRQLRELFVTLILDGAPAKILWEQFNQDFTEDLRINMSDRDANNTALRQIDLGLQHHGRTNEVVGLTAVVHLDTEYMRFKHMFDPAQMSAFVDEHLANLTHEQRHVYDTVVSSVTSGASNLFMIDAPAGTGKTYTE 329
[Close]
BLAST of mRNA_H-paniculata_contig47290.11753.1 vs. uniprot
Match: J9LSB3_ACYPI (ATP-dependent DNA helicase n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9LSB3_ACYPI)

HSP 1 Score: 53.1 bits (126), Expect = 7.810e-5
Identity = 39/167 (23.35%), Postives = 80/167 (47.90%), Query Frame = 1 
Query:    1 VDPIMHPTFKASARARGLITGEEECFICVEDASHFQSHRDLRGL--LITLVLNGGPARRLWDESQDIRFVHFLLRMTLHD---ARHVALREIGLKLLMHGKSNVQVNFPATRNAFDHCSEILFATDHLPLRITERGHTYDTVLAAIHRRRGHPVTIDAPADTGKTFV 486
            V+  +HPTFK++ +A GL+  +E  +  +E+A+  QS R +R L  +I +         LWD+ ++     + +R+   D   A H+A   +   L +   + + ++      ++D  +      ++      E+   Y+ ++ +++   G    +DAP  TGKTF+
Sbjct:  565 VNGQVHPTFKSTCKALGLLQDDEHLYAALEEAALCQSPRMIRDLFTIILVFCQVTDPLCLWDKFKEYLSEDYKIRLERQDSVDAEHLADVVLNKCLSVIEDAVLALDEYIKETSYDLVALENVVRNNEESLNDEQKFAYNQIIKSVNNNEGRIYFLDAPGGTGKTFL 731
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig47290.11753.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K9W0_9PHAE9.250e-2938.41Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L0I5_9PHAE2.100e-2435.47ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5JZJ6_9PHAE2.470e-2334.88ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
J9LSB3_ACYPI7.810e-523.35ATP-dependent DNA helicase n=1 Tax=Acyrthosiphon p... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig47290contigH-paniculata_contig47290:8..579 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score62.4
Seed ortholog evalue2.3e-07
Seed eggNOG ortholog225117.XP_009365391.1
KEGG koko:K15255
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the helicase family
EggNOG OGs37I5H@33090,3GMSB@35493,COG0507@1,KOG0987@2759
EC3.6.4.12
COG Functional cat.D
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029,ko03032
Exons1
Model size572
Cds size498
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig47290.11753.1prot_H-paniculata_contig47290.11753.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig47290 20..517 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930405.9231093-UTR-H-paniculata_contig47290:7..191622930405.9231093-UTR-H-paniculata_contig47290:7..19Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig47290 8..19 +
1691481277.244443-UTR-H-paniculata_contig47290:7..191691481277.244443-UTR-H-paniculata_contig47290:7..19Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig47290 8..19 +
1622930405.9517996-UTR-H-paniculata_contig47290:517..5791622930405.9517996-UTR-H-paniculata_contig47290:517..579Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig47290 518..579 +
1691481277.2745528-UTR-H-paniculata_contig47290:517..5791691481277.2745528-UTR-H-paniculata_contig47290:517..579Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig47290 518..579 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930405.9400136-CDS-H-paniculata_contig47290:19..5171622930405.9400136-CDS-H-paniculata_contig47290:19..517Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47290 20..517 +
1691481277.2641718-CDS-H-paniculata_contig47290:19..5171691481277.2641718-CDS-H-paniculata_contig47290:19..517Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47290 20..517 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig47290.11753.1

>prot_H-paniculata_contig47290.11753.1 ID=prot_H-paniculata_contig47290.11753.1|Name=mRNA_H-paniculata_contig47290.11753.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=166bp
MHPTFKASARARGLITGEEECFICVEDASHFQSHRDLRGLLITLVLNGGP
ARRLWDESQDIRFVHFLLRMTLHDARHVALREIGLKLLMHGKSNVQVNFP
ATRNAFDHCSEILFATDHLPLRITERGHTYDTVLAAIHRRRGHPVTIDAP
ADTGKTFVEKSFVHA*
back to top

mRNA from alignment at H-paniculata_contig47290:8..579+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig47290.11753.1 ID=mRNA_H-paniculata_contig47290.11753.1|Name=mRNA_H-paniculata_contig47290.11753.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=572bp|location=Sequence derived from alignment at H-paniculata_contig47290:8..579+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCGACCCTATAATGCATCCCACTTTCAAGGCTTCTGCCCGAGCCCGTGG
TTTAATCACGGGTGAGGAGGAGTGTTTCATTTGCGTGGAAGACGCCTCTC
ATTTTCAGTCTCACCGAGACCTGCGAGGGCTTCTCATTACGTTGGTCCTC
AACGGCGGTCCCGCTCGCAGACTGTGGGATGAATCTCAAGACATCCGATT
CGTACATTTCCTTCTTCGAATGACTCTTCATGACGCCCGTCATGTCGCCT
TGCGAGAGATTGGTCTAAAGCTCCTCATGCACGGTAAATCTAACGTTCAA
GTTAACTTCCCAGCCACGCGAAACGCCTTTGACCATTGTAGCGAGATACT
CTTCGCCACTGACCACCTTCCGTTGCGTATCACCGAAAGAGGGCACACCT
ACGATACCGTGCTCGCTGCCATTCACCGCCGACGAGGTCACCCCGTTACG
ATCGATGCGCCGGCTGACACCGGTAAAACGTTCGTCGAAAAATCCTTCGT
TCATGCCTAGGCGCCAACTCCCGAGTCGTTCTTGTAGTTGCTTCCACAGG
CATTGCCGCCTTGGTTAGACCG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig47290:8..579+

>mRNA_H-paniculata_contig47290.11753.1 ID=mRNA_H-paniculata_contig47290.11753.1|Name=mRNA_H-paniculata_contig47290.11753.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=996bp|location=Sequence derived from alignment at H-paniculata_contig47290:8..579+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCATCCCACTTTCAAGGCTTCTGCCCGAGCCCGTGGTTTAATCACGGG
TGAGGAGGAGTGTTTCATTTGCGTGGAAGACGCCTCTCATTTTCAGTCTC
ACCGAGACCTGCGAGGGCTTCTCATTACGTTGGTCCTCAACGGCGGTCCC
GCTCGCAGACTGTGGGATGAATCTCAAGACATCCGATTCGTACATTTCCT
TCTTCGAATGACTCTTCATGACGCCCGTCATGTCGCCTTGCGAGAGATTG
GTCTAAAGCTCCTCATGCACGGTAAATCTAACGTTCAAGTTAACTTCCCA
GCCACGCGAAACGCCTTTGACCATTGTAGCGAGATACTCTTCGCCACTGA
CCACCTTCCGTTGCGTATCACCGAAAGAGGGCACACCTACGATACCGTGC
TCGCTGCCATTCACCGCCGACGAGGTCACCCCGTTACGATCGATGCGCCG
GCTGACACCGGTAAAACGTTCGTCGAAAAATCCTTCGTTCATGCCTAGAT
GCATCCCACTTTCAAGGCTTCTGCCCGAGCCCGTGGTTTAATCACGGGTG
AGGAGGAGTGTTTCATTTGCGTGGAAGACGCCTCTCATTTTCAGTCTCAC
CGAGACCTGCGAGGGCTTCTCATTACGTTGGTCCTCAACGGCGGTCCCGC
TCGCAGACTGTGGGATGAATCTCAAGACATCCGATTCGTACATTTCCTTC
TTCGAATGACTCTTCATGACGCCCGTCATGTCGCCTTGCGAGAGATTGGT
CTAAAGCTCCTCATGCACGGTAAATCTAACGTTCAAGTTAACTTCCCAGC
CACGCGAAACGCCTTTGACCATTGTAGCGAGATACTCTTCGCCACTGACC
ACCTTCCGTTGCGTATCACCGAAAGAGGGCACACCTACGATACCGTGCTC
GCTGCCATTCACCGCCGACGAGGTCACCCCGTTACGATCGATGCGCCGGC
TGACACCGGTAAAACGTTCGTCGAAAAATCCTTCGTTCATGCCTAG
back to top