mRNA_H-paniculata_contig47281.11752.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig47281.11752.1
Unique NamemRNA_H-paniculata_contig47281.11752.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig47281.11752.1 vs. uniprot
Match: A0A2I6U1M4_SACJA (Tic20-like protein n=15 Tax=Saccharina japonica TaxID=88149 RepID=A0A2I6U1M4_SACJA)

HSP 1 Score: 116 bits (290), Expect = 3.990e-29
Identity = 59/77 (76.62%), Postives = 64/77 (83.12%), Query Frame = 1
Query:    1 DKALSALSYLLPLADGLAYGGHLFASHPEQMAVLQPLVAVLFALRSLPFATLVGFFGLSTLSNNPQVNKLVRFNMKQ 231
            DKALSAL YLLPL DG+++ GHLF + PEQ A  QPL AVL ALRSLPFATLVGFF LS LS NPQVNKLVRFNM+Q
Sbjct:  255 DKALSALPYLLPLVDGISFAGHLFGAFPEQTAWAQPLAAVLLALRSLPFATLVGFFSLSALSGNPQVNKLVRFNMQQ 331          
BLAST of mRNA_H-paniculata_contig47281.11752.1 vs. uniprot
Match: A0A6H5KVD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVD7_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 2.860e-28
Identity = 54/77 (70.13%), Postives = 64/77 (83.12%), Query Frame = 1
Query:    1 DKALSALSYLLPLADGLAYGGHLFASHPEQMAVLQPLVAVLFALRSLPFATLVGFFGLSTLSNNPQVNKLVRFNMKQ 231
            DKALSAL Y+LPLADG+ +  HLF + PEQ A  +PLVAVL ALRS+PFATL+GFF LS  S+NPQ+NKLVRFNM+Q
Sbjct:   35 DKALSALPYVLPLADGVVFAAHLFGAFPEQTAWAEPLVAVLLALRSVPFATLIGFFSLSVGSSNPQINKLVRFNMQQ 111          
BLAST of mRNA_H-paniculata_contig47281.11752.1 vs. uniprot
Match: A0A6H5KUU9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU9_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 1.870e-27
Identity = 55/77 (71.43%), Postives = 63/77 (81.82%), Query Frame = 1
Query:    1 DKALSALSYLLPLADGLAYGGHLFASHPEQMAVLQPLVAVLFALRSLPFATLVGFFGLSTLSNNPQVNKLVRFNMKQ 231
            DKALSAL Y+LPLADG+ +  HLF + PEQ A  QPL AVL ALRS+PFATLVGFF LS  S+NPQ+NKLVRFNM+Q
Sbjct:  117 DKALSALPYVLPLADGVVFAAHLFGAFPEQTAWAQPLAAVLLALRSVPFATLVGFFSLSVGSSNPQINKLVRFNMQQ 193          
BLAST of mRNA_H-paniculata_contig47281.11752.1 vs. uniprot
Match: D8LS19_ECTSI (EF-hand domain-containing protein n=7 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS19_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 1.560e-26
Identity = 54/77 (70.13%), Postives = 63/77 (81.82%), Query Frame = 1
Query:    1 DKALSALSYLLPLADGLAYGGHLFASHPEQMAVLQPLVAVLFALRSLPFATLVGFFGLSTLSNNPQVNKLVRFNMKQ 231
            DKALSAL Y+LPLADG+ +  HLF + PEQ A  QPL AVL ALRS+PFATL+GFF LS  S+NPQ+NKLVRFNM+Q
Sbjct:  254 DKALSALPYVLPLADGVVFAAHLFGAFPEQTAWAQPLAAVLLALRSVPFATLIGFFSLSIWSSNPQINKLVRFNMQQ 330          
BLAST of mRNA_H-paniculata_contig47281.11752.1 vs. uniprot
Match: D7FRG5_ECTSI (EF-hand domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRG5_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 3.590e-26
Identity = 55/77 (71.43%), Postives = 62/77 (80.52%), Query Frame = 1
Query:    1 DKALSALSYLLPLADGLAYGGHLFASHPEQMAVLQPLVAVLFALRSLPFATLVGFFGLSTLSNNPQVNKLVRFNMKQ 231
            DKALSAL YLLPL DG+ +  HLF + PEQ A  QPL AVL ALRSLPFATL+GFF LS  S+NP+VNKLVRFNM+Q
Sbjct:  254 DKALSALPYLLPLVDGILFAAHLFGAFPEQTAWAQPLAAVLLALRSLPFATLIGFFSLSIGSSNPRVNKLVRFNMQQ 330          
BLAST of mRNA_H-paniculata_contig47281.11752.1 vs. uniprot
Match: D8LS20_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS20_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 7.110e-25
Identity = 53/77 (68.83%), Postives = 62/77 (80.52%), Query Frame = 1
Query:    1 DKALSALSYLLPLADGLAYGGHLFASHPEQMAVLQPLVAVLFALRSLPFATLVGFFGLSTLSNNPQVNKLVRFNMKQ 231
            DKALSAL Y+LPLADG+ +  HLF +  EQ A  QPL AVL ALRS+PFATL+GFF LS  S+NPQ+NKLVRFNM+Q
Sbjct:  254 DKALSALPYVLPLADGVVFAAHLFGAFLEQTAWAQPLAAVLLALRSVPFATLIGFFSLSIGSSNPQINKLVRFNMQQ 330          
BLAST of mRNA_H-paniculata_contig47281.11752.1 vs. uniprot
Match: A0A6H5JY95_9PHAE (EF-hand domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY95_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 5.250e-22
Identity = 45/77 (58.44%), Postives = 62/77 (80.52%), Query Frame = 1
Query:    1 DKALSALSYLLPLADGLAYGGHLFASHPEQMAVLQPLVAVLFALRSLPFATLVGFFGLSTLSNNPQVNKLVRFNMKQ 231
            +KAL AL Y+LPL+DG+ Y  H++++ P+QMA  +PLVA+L A+ +LPFATLV FFG+S LS+N  +NKL+RFNM Q
Sbjct:  250 EKALCALPYILPLSDGIVYAQHIYSTFPQQMAWSEPLVAILIAVNNLPFATLVAFFGMSILSSNQNINKLLRFNMLQ 326          
BLAST of mRNA_H-paniculata_contig47281.11752.1 vs. uniprot
Match: D8LTM8_ECTSI (TIC 20 related, plastid import n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTM8_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 7.870e-19
Identity = 42/81 (51.85%), Postives = 57/81 (70.37%), Query Frame = 1
Query:    1 DKALSALSYLLPLADGLAYGGHLFASHPEQMAVLQPLVAVLFALRSLPFATLVGFFGLSTLSNNPQVNKLVRFNMKQVRVV 243
            DK LS L Y LPL D L +G H+F + P Q++ L+PLVA+L   RSLPF+ L+ FFGL   +  P+VNKLVRFN++Q  ++
Sbjct:  269 DKLLSVLPYTLPLMDSLVFGAHIFQTFPTQLSFLEPLVAILLIYRSLPFSGLILFFGLQWFAAKPEVNKLVRFNLRQAVIL 349          
BLAST of mRNA_H-paniculata_contig47281.11752.1 vs. uniprot
Match: A0A6H5KKK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK9_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 4.010e-16
Identity = 40/59 (67.80%), Postives = 43/59 (72.88%), Query Frame = 1
Query:    1 DKALSALSYLLPLADGLAYGGHLFASHPEQMAVLQPLVAVLFALRSLPFATLVGFFGLS 177
            D ALSAL YLLPLADG+ +  HLF   PEQ A  QPL AVL  LRSL FATL+GFF LS
Sbjct:  108 DNALSALPYLLPLADGIVFAAHLFGVFPEQTAWAQPLAAVLLTLRSLSFATLIGFFSLS 166          
BLAST of mRNA_H-paniculata_contig47281.11752.1 vs. uniprot
Match: A0A7S4ANG9_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ANG9_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 5.570e-12
Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    1 DKALSALSYLLPLADGLAYGGHLFASHPEQMAVLQPLVAVLF-ALRSLPFATLVGFFGLSTLSNNPQVNKLVRFNMKQ 231
            DK +S L YL PL D L +G ++   +PE   V   ++A+LF A +++PF+  + F  L+TLSNNP +NKLVRFNM+Q
Sbjct:  222 DKIVSVLPYLFPLLDSLQFGRYVILDNPENPFVF--VLALLFSAYKTIPFSGFIAFIALNTLSNNPGLNKLVRFNMQQ 297          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig47281.11752.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2I6U1M4_SACJA3.990e-2976.62Tic20-like protein n=15 Tax=Saccharina japonica Ta... [more]
A0A6H5KVD7_9PHAE2.860e-2870.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUU9_9PHAE1.870e-2771.43Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D8LS19_ECTSI1.560e-2670.13EF-hand domain-containing protein n=7 Tax=Ectocarp... [more]
D7FRG5_ECTSI3.590e-2671.43EF-hand domain-containing protein n=2 Tax=Ectocarp... [more]
D8LS20_ECTSI7.110e-2568.83EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5JY95_9PHAE5.250e-2258.44EF-hand domain-containing protein n=2 Tax=Ectocarp... [more]
D8LTM8_ECTSI7.870e-1951.85TIC 20 related, plastid import n=2 Tax=Ectocarpus ... [more]
A0A6H5KKK9_9PHAE4.010e-1667.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4ANG9_9STRA5.570e-1247.44Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig47281contigH-paniculata_contig47281:1043..1285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.3
Seed ortholog evalue2.1e-22
Seed eggNOG ortholog2880.D7FRG4
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0009507,GO:0009526,GO:0009528,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009706,GO:0009941,GO:0016020,GO:0019866,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042170,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
EggNOG free text desc.protein transport
EggNOG OGs2BYWW@1,2QUSD@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size243
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930405.8772216-CDS-H-paniculata_contig47281:1042..12851622930405.8772216-CDS-H-paniculata_contig47281:1042..1285Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47281 1043..1285 +
1691481277.2304842-CDS-H-paniculata_contig47281:1042..12851691481277.2304842-CDS-H-paniculata_contig47281:1042..1285Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47281 1043..1285 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig47281.11752.1prot_H-paniculata_contig47281.11752.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig47281 1043..1285 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig47281.11752.1

>prot_H-paniculata_contig47281.11752.1 ID=prot_H-paniculata_contig47281.11752.1|Name=mRNA_H-paniculata_contig47281.11752.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=81bp
DKALSALSYLLPLADGLAYGGHLFASHPEQMAVLQPLVAVLFALRSLPFA
TLVGFFGLSTLSNNPQVNKLVRFNMKQVRVV
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mRNA from alignment at H-paniculata_contig47281:1043..1285+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig47281.11752.1 ID=mRNA_H-paniculata_contig47281.11752.1|Name=mRNA_H-paniculata_contig47281.11752.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=243bp|location=Sequence derived from alignment at H-paniculata_contig47281:1043..1285+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACAAGGCGTTGTCTGCGCTTTCGTACCTTCTACCGCTGGCGGATGGGTT GGCGTATGGGGGGCACTTGTTCGCGTCGCACCCGGAGCAGATGGCGGTGT TACAGCCTTTGGTGGCGGTGTTGTTTGCTCTTCGATCTTTACCGTTCGCG ACGCTGGTCGGCTTCTTCGGTTTGTCTACATTGAGCAATAACCCGCAGGT CAACAAGCTTGTACGGTTCAACATGAAACAGGTGAGGGTTGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig47281:1043..1285+

>mRNA_H-paniculata_contig47281.11752.1 ID=mRNA_H-paniculata_contig47281.11752.1|Name=mRNA_H-paniculata_contig47281.11752.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=486bp|location=Sequence derived from alignment at H-paniculata_contig47281:1043..1285+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACAAGGCGTTGTCTGCGCTTTCGTACCTTCTACCGCTGGCGGATGGGTT
GGCGTATGGGGGGCACTTGTTCGCGTCGCACCCGGAGCAGATGGCGGTGT
TACAGCCTTTGGTGGCGGTGTTGTTTGCTCTTCGATCTTTACCGTTCGCG
ACGCTGGTCGGCTTCTTCGGTTTGTCTACATTGAGCAATAACCCGCAGGT
CAACAAGCTTGTACGGTTCAACATGAAACAGGTGAGGGTTGTGGACAAGG
CGTTGTCTGCGCTTTCGTACCTTCTACCGCTGGCGGATGGGTTGGCGTAT
GGGGGGCACTTGTTCGCGTCGCACCCGGAGCAGATGGCGGTGTTACAGCC
TTTGGTGGCGGTGTTGTTTGCTCTTCGATCTTTACCGTTCGCGACGCTGG
TCGGCTTCTTCGGTTTGTCTACATTGAGCAATAACCCGCAGGTCAACAAG
CTTGTACGGTTCAACATGAAACAGGTGAGGGTTGTG
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