mRNA_H-paniculata_contig47281.11752.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig47281.11752.1 vs. uniprot
Match: A0A2I6U1M4_SACJA (Tic20-like protein n=15 Tax=Saccharina japonica TaxID=88149 RepID=A0A2I6U1M4_SACJA) HSP 1 Score: 116 bits (290), Expect = 3.990e-29 Identity = 59/77 (76.62%), Postives = 64/77 (83.12%), Query Frame = 1
Query: 1 DKALSALSYLLPLADGLAYGGHLFASHPEQMAVLQPLVAVLFALRSLPFATLVGFFGLSTLSNNPQVNKLVRFNMKQ 231
DKALSAL YLLPL DG+++ GHLF + PEQ A QPL AVL ALRSLPFATLVGFF LS LS NPQVNKLVRFNM+Q
Sbjct: 255 DKALSALPYLLPLVDGISFAGHLFGAFPEQTAWAQPLAAVLLALRSLPFATLVGFFSLSALSGNPQVNKLVRFNMQQ 331
BLAST of mRNA_H-paniculata_contig47281.11752.1 vs. uniprot
Match: A0A6H5KVD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVD7_9PHAE) HSP 1 Score: 109 bits (272), Expect = 2.860e-28 Identity = 54/77 (70.13%), Postives = 64/77 (83.12%), Query Frame = 1
Query: 1 DKALSALSYLLPLADGLAYGGHLFASHPEQMAVLQPLVAVLFALRSLPFATLVGFFGLSTLSNNPQVNKLVRFNMKQ 231
DKALSAL Y+LPLADG+ + HLF + PEQ A +PLVAVL ALRS+PFATL+GFF LS S+NPQ+NKLVRFNM+Q
Sbjct: 35 DKALSALPYVLPLADGVVFAAHLFGAFPEQTAWAEPLVAVLLALRSVPFATLIGFFSLSVGSSNPQINKLVRFNMQQ 111
BLAST of mRNA_H-paniculata_contig47281.11752.1 vs. uniprot
Match: A0A6H5KUU9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU9_9PHAE) HSP 1 Score: 109 bits (272), Expect = 1.870e-27 Identity = 55/77 (71.43%), Postives = 63/77 (81.82%), Query Frame = 1
Query: 1 DKALSALSYLLPLADGLAYGGHLFASHPEQMAVLQPLVAVLFALRSLPFATLVGFFGLSTLSNNPQVNKLVRFNMKQ 231
DKALSAL Y+LPLADG+ + HLF + PEQ A QPL AVL ALRS+PFATLVGFF LS S+NPQ+NKLVRFNM+Q
Sbjct: 117 DKALSALPYVLPLADGVVFAAHLFGAFPEQTAWAQPLAAVLLALRSVPFATLVGFFSLSVGSSNPQINKLVRFNMQQ 193
BLAST of mRNA_H-paniculata_contig47281.11752.1 vs. uniprot
Match: D8LS19_ECTSI (EF-hand domain-containing protein n=7 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS19_ECTSI) HSP 1 Score: 109 bits (272), Expect = 1.560e-26 Identity = 54/77 (70.13%), Postives = 63/77 (81.82%), Query Frame = 1
Query: 1 DKALSALSYLLPLADGLAYGGHLFASHPEQMAVLQPLVAVLFALRSLPFATLVGFFGLSTLSNNPQVNKLVRFNMKQ 231
DKALSAL Y+LPLADG+ + HLF + PEQ A QPL AVL ALRS+PFATL+GFF LS S+NPQ+NKLVRFNM+Q
Sbjct: 254 DKALSALPYVLPLADGVVFAAHLFGAFPEQTAWAQPLAAVLLALRSVPFATLIGFFSLSIWSSNPQINKLVRFNMQQ 330
BLAST of mRNA_H-paniculata_contig47281.11752.1 vs. uniprot
Match: D7FRG5_ECTSI (EF-hand domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRG5_ECTSI) HSP 1 Score: 108 bits (269), Expect = 3.590e-26 Identity = 55/77 (71.43%), Postives = 62/77 (80.52%), Query Frame = 1
Query: 1 DKALSALSYLLPLADGLAYGGHLFASHPEQMAVLQPLVAVLFALRSLPFATLVGFFGLSTLSNNPQVNKLVRFNMKQ 231
DKALSAL YLLPL DG+ + HLF + PEQ A QPL AVL ALRSLPFATL+GFF LS S+NP+VNKLVRFNM+Q
Sbjct: 254 DKALSALPYLLPLVDGILFAAHLFGAFPEQTAWAQPLAAVLLALRSLPFATLIGFFSLSIGSSNPRVNKLVRFNMQQ 330
BLAST of mRNA_H-paniculata_contig47281.11752.1 vs. uniprot
Match: D8LS20_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS20_ECTSI) HSP 1 Score: 104 bits (260), Expect = 7.110e-25 Identity = 53/77 (68.83%), Postives = 62/77 (80.52%), Query Frame = 1
Query: 1 DKALSALSYLLPLADGLAYGGHLFASHPEQMAVLQPLVAVLFALRSLPFATLVGFFGLSTLSNNPQVNKLVRFNMKQ 231
DKALSAL Y+LPLADG+ + HLF + EQ A QPL AVL ALRS+PFATL+GFF LS S+NPQ+NKLVRFNM+Q
Sbjct: 254 DKALSALPYVLPLADGVVFAAHLFGAFLEQTAWAQPLAAVLLALRSVPFATLIGFFSLSIGSSNPQINKLVRFNMQQ 330
BLAST of mRNA_H-paniculata_contig47281.11752.1 vs. uniprot
Match: A0A6H5JY95_9PHAE (EF-hand domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY95_9PHAE) HSP 1 Score: 97.1 bits (240), Expect = 5.250e-22 Identity = 45/77 (58.44%), Postives = 62/77 (80.52%), Query Frame = 1
Query: 1 DKALSALSYLLPLADGLAYGGHLFASHPEQMAVLQPLVAVLFALRSLPFATLVGFFGLSTLSNNPQVNKLVRFNMKQ 231
+KAL AL Y+LPL+DG+ Y H++++ P+QMA +PLVA+L A+ +LPFATLV FFG+S LS+N +NKL+RFNM Q
Sbjct: 250 EKALCALPYILPLSDGIVYAQHIYSTFPQQMAWSEPLVAILIAVNNLPFATLVAFFGMSILSSNQNINKLLRFNMLQ 326
BLAST of mRNA_H-paniculata_contig47281.11752.1 vs. uniprot
Match: D8LTM8_ECTSI (TIC 20 related, plastid import n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTM8_ECTSI) HSP 1 Score: 88.6 bits (218), Expect = 7.870e-19 Identity = 42/81 (51.85%), Postives = 57/81 (70.37%), Query Frame = 1
Query: 1 DKALSALSYLLPLADGLAYGGHLFASHPEQMAVLQPLVAVLFALRSLPFATLVGFFGLSTLSNNPQVNKLVRFNMKQVRVV 243
DK LS L Y LPL D L +G H+F + P Q++ L+PLVA+L RSLPF+ L+ FFGL + P+VNKLVRFN++Q ++
Sbjct: 269 DKLLSVLPYTLPLMDSLVFGAHIFQTFPTQLSFLEPLVAILLIYRSLPFSGLILFFGLQWFAAKPEVNKLVRFNLRQAVIL 349
BLAST of mRNA_H-paniculata_contig47281.11752.1 vs. uniprot
Match: A0A6H5KKK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK9_9PHAE) HSP 1 Score: 77.8 bits (190), Expect = 4.010e-16 Identity = 40/59 (67.80%), Postives = 43/59 (72.88%), Query Frame = 1
Query: 1 DKALSALSYLLPLADGLAYGGHLFASHPEQMAVLQPLVAVLFALRSLPFATLVGFFGLS 177
D ALSAL YLLPLADG+ + HLF PEQ A QPL AVL LRSL FATL+GFF LS
Sbjct: 108 DNALSALPYLLPLADGIVFAAHLFGVFPEQTAWAQPLAAVLLTLRSLSFATLIGFFSLS 166
BLAST of mRNA_H-paniculata_contig47281.11752.1 vs. uniprot
Match: A0A7S4ANG9_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ANG9_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 5.570e-12 Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 1
Query: 1 DKALSALSYLLPLADGLAYGGHLFASHPEQMAVLQPLVAVLF-ALRSLPFATLVGFFGLSTLSNNPQVNKLVRFNMKQ 231
DK +S L YL PL D L +G ++ +PE V ++A+LF A +++PF+ + F L+TLSNNP +NKLVRFNM+Q
Sbjct: 222 DKIVSVLPYLFPLLDSLQFGRYVILDNPENPFVF--VLALLFSAYKTIPFSGFIAFIALNTLSNNPGLNKLVRFNMQQ 297 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig47281.11752.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig47281.11752.1 >prot_H-paniculata_contig47281.11752.1 ID=prot_H-paniculata_contig47281.11752.1|Name=mRNA_H-paniculata_contig47281.11752.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=81bp DKALSALSYLLPLADGLAYGGHLFASHPEQMAVLQPLVAVLFALRSLPFAback to top mRNA from alignment at H-paniculata_contig47281:1043..1285+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig47281.11752.1 ID=mRNA_H-paniculata_contig47281.11752.1|Name=mRNA_H-paniculata_contig47281.11752.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=243bp|location=Sequence derived from alignment at H-paniculata_contig47281:1043..1285+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig47281:1043..1285+ >mRNA_H-paniculata_contig47281.11752.1 ID=mRNA_H-paniculata_contig47281.11752.1|Name=mRNA_H-paniculata_contig47281.11752.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=486bp|location=Sequence derived from alignment at H-paniculata_contig47281:1043..1285+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |