prot_H-paniculata_contig4728.11751.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4728.11751.1
Unique Nameprot_H-paniculata_contig4728.11751.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length385
Homology
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BLAST of mRNA_H-paniculata_contig4728.11751.1 vs. uniprot
Match: D8LN43_ECTSI (DIS3-like exonuclease 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN43_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 4.880e-35
Identity = 83/177 (46.89%), Postives = 101/177 (57.06%), Query Frame = 0 
Query:   52 MGALRIRETYMRGDSLLVAVPDTVLGSGGSSSVSSSTVPFSGLTAGTLEKQQQQRVRYLCPSADFLHCYLELFDRPEIQGCFRDTDGKGIGNATRELSGGGGAYRLLL-------------------LYSELCKLTGASGAMSMRQERRLMQLARDLPGTLVFFDKFCPDLHTTQGG 209
            MGA+RIRETY+RGD LLV++ DT+LG GG       +   +G    +  K  ++R  Y+CP+ADFLHCYLELFDRP    CF+   G G                                      L+SEL KLTGA+GA+SM+QERRL QLAR LPGT+VFFDKFCPDLH    G
Sbjct:    1 MGAMRIRETYLRGDRLLVSMKDTLLGEGGGEEGEGCSFQATGGGEDS-RKHNKRRCSYVCPTADFLHCYLELFDRPNFSACFQRDGGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHSELSKLTGATGALSMKQERRLSQLARSLPGTMVFFDKFCPDLHGASAG 176
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4728.11751.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LN43_ECTSI4.880e-3546.89DIS3-like exonuclease 1 n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4728contigH-paniculata_contig4728:405..9552 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4728.11751.1mRNA_H-paniculata_contig4728.11751.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4728 405..9557 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4728.11751.1 ID=prot_H-paniculata_contig4728.11751.1|Name=mRNA_H-paniculata_contig4728.11751.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=385bp
MAHDEHKRRQRGENPASTATGVGASSLVGADVGRDFVVRAAKAKRGATRG
GMGALRIRETYMRGDSLLVAVPDTVLGSGGSSSVSSSTVPFSGLTAGTLE
KQQQQRVRYLCPSADFLHCYLELFDRPEIQGCFRDTDGKGIGNATRELSG
GGGAYRLLLLYSELCKLTGASGAMSMRQERRLMQLARDLPGTLVFFDKFC
PDLHTTQGGTGSTGTDGTDRNSKTTTTSAATSTTATTAAGISNSDIGGFG
IGEVVAGRSVTVDISDKVGQLRCGGDGGAENNCSRSGALMPLIPPLMTAC
CEWCRVKLQVPAVWVLSDDFGDGCCESHGGGSGAGREVRVLDFERFLQEV
VGIAGVIGTAAIGEELRYRGGLLRAAHLAAKVRS*
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